On the truncation of long-range electrostatic interactions in DNA

Biophysical Journal

Volumn 79, Issue 3, 2000, Pages 1537-1553

  Norberg, Jan ^a   Nilsson, Lennart ^a  

^a KAROLINSKA INSTITUTE   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

CYTIDINE DERIVATIVE; OLIGONUCLEOTIDE;

AQUEOUS SOLUTION; ARTICLE; DNA BINDING; DNA CONFORMATION; DNA STRUCTURE; ELECTRICITY; ENERGY; MACROMOLECULE; MOLECULAR DYNAMICS; SIMULATION;

EID: 0033850287     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(00)76405-8     Document Type: Article

References (7)

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3. Asp anticodon hairpin: 3 ns of multiple molecular dynamics simulations. Biophys. J. 71:940-954.
4. Auffinger, P., and E. Westhof. 1998. Molecular dynamics: simulations of nucleic acids. In Encyclopedia of Computational Chemistry. John Wiley & Sons, New York. 1628-1639.
5. Arnott, S., P. J. C. Smith, and R. Chandrasekaran. 1976. Atomic coordinates and molecular conformations for DNA-DNA, RNA-RNA, and DNA-RNA helices. In CRC Handbook of Biochemistry and Molecular Biology: Nucleic Acids, 3rd ed., Vol. 2. G. D. Fasman, editor. CRC Press, Cleveland, OH. 411-422.
6. Berendsen, H. J. C. 1993. Electrostatic interactions. In Computer Simulations of Biomolecular Systems: Theoretical and Experimental Applications. ESCOM, Leiden, The Netherlands. 161-181.
7. Berendsen, H. J. C., W. F. van Gunsteren, H. R. J. Zwinderman, and R. G. Geurtsen. 1986. Simulations of proteins in water. Ann. N.Y. Acad. Sci. 482:269-285.