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Volumn 74, Issue 2 I, 1998, Pages 780-788

A Brownian dynamics program for the simulation of linear and circular DNA and other wormlike chain polyelectrolytes

Author keywords

[No Author keywords available]

Indexed keywords

CIRCULAR DNA; DNA;

EID: 0031880233     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(98)74003-2     Document Type: Article
Times cited : (129)

References (21)
  • 1
    • 0001329681 scopus 로고
    • Brownian dynamics simulation of wormlike chains. Fluorescence depolarization and depolarized light scattering
    • Allison, S. A. 1986. Brownian dynamics simulation of wormlike chains. Fluorescence depolarization and depolarized light scattering. Macromolecules. 19:118-124.
    • (1986) Macromolecules , vol.19 , pp. 118-124
    • Allison, S.A.1
  • 2
    • 0000598304 scopus 로고
    • Bending and twisting dynamics of short linear DNAs: Analysis of the triplet anisotropy decay of a 209-basepair fragment by Brownian simulation
    • Allison, S. A., R. Austin, and M. Hogan. 1989. Bending and twisting dynamics of short linear DNAs: analysis of the triplet anisotropy decay of a 209-basepair fragment by Brownian simulation. J. Chem. Phys. 90:3843-3854.
    • (1989) J. Chem. Phys. , vol.90 , pp. 3843-3854
    • Allison, S.A.1    Austin, R.2    Hogan, M.3
  • 3
    • 0025383092 scopus 로고
    • Brownian dynamics simulations of wormlike chains: Dynamic light scattering from a 2311 basepair DNa fragment
    • Allison, S. A., S. S. Sorlie, and R. Pecora. 1990. Brownian dynamics simulations of wormlike chains: dynamic light scattering from a 2311 basepair DNA fragment. Macromolecules. 23:1110-1118.
    • (1990) Macromolecules , vol.23 , pp. 1110-1118
    • Allison, S.A.1    Sorlie, S.S.2    Pecora, R.3
  • 4
    • 0028184699 scopus 로고
    • Kinetics of DNA supercoiling studied by Brownian dynamics simulation
    • Chirico, G., and J. Langowski. 1994. Kinetics of DNA supercoiling studied by Brownian dynamics simulation. Biopolymers. 34:415-433.
    • (1994) Biopolymers , vol.34 , pp. 415-433
    • Chirico, G.1    Langowski, J.2
  • 5
    • 0029776063 scopus 로고    scopus 로고
    • Brownian dynamics simulations of supercoiled DNA with bent sequences
    • Chirico, G., and J. Langowski. 1996. Brownian dynamics simulations of supercoiled DNA with bent sequences. Biophys. J. 71:955-971.
    • (1996) Biophys. J. , vol.71 , pp. 955-971
    • Chirico, G.1    Langowski, J.2
  • 7
    • 84927999283 scopus 로고
    • Topological aspects of the physics of polymers: The theory and its biological applications
    • Frank-Kamenetskil, M. D., and A. V. Vologodskil. 1981. Topological aspects of the physics of polymers: the theory and its biological applications. Sov. Phys. Usp. 24:679-696.
    • (1981) Sov. Phys. Usp. , vol.24 , pp. 679-696
    • Frank-Kamenetskil, M.D.1    Vologodskil, A.V.2
  • 9
    • 84985720098 scopus 로고
    • Monte Carlo approach to the analysis of the rotational diffusion of wormlike chains
    • Hagerman, P. J., and B. H. Zimm. 1981. Monte Carlo approach to the analysis of the rotational diffusion of wormlike chains. Biopolymers. 20:1481-1502.
    • (1981) Biopolymers , vol.20 , pp. 1481-1502
    • Hagerman, P.J.1    Zimm, B.H.2
  • 10
    • 0028819366 scopus 로고
    • Modulation of intramolecular interactions in superhelical DNa by curved sequences. a Monte Carlo simulation study
    • Klenin, K., M. D. Frank-Kamenetskii, and J. Langowski. 1995. Modulation of intramolecular interactions in superhelical DNA by curved sequences. A Monte Carlo simulation study. Biophys. J. 68:81-88.
    • (1995) Biophys. J. , vol.68 , pp. 81-88
    • Klenin, K.1    Frank-Kamenetskii, M.D.2    Langowski, J.3
  • 12
    • 0018393775 scopus 로고
    • Catastrophic variation of twist and writhing of circular DNAs with constraint?
    • le Bret, M. 1979. Catastrophic variation of twist and writhing of circular DNAs with constraint? Biopolymers. 18:1709-1725.
    • (1979) Biopolymers , vol.18 , pp. 1709-1725
    • Bret, M.1
  • 13
    • 0031880930 scopus 로고    scopus 로고
    • Looping dynamics of linear DNa molecules and the effect of DNa curvature: A study by Brownian dynamics simulation
    • Merlitz, H., K. Rippe, K. Klenin, and J. Langowski. 1998. Looping dynamics of linear DNA molecules and the effect of DNA curvature: a study by Brownian dynamics simulation. Biophys. J. 74:773-779.
    • (1998) Biophys. J. , vol.74 , pp. 773-779
    • Merlitz, H.1    Rippe, K.2    Klenin, K.3    Langowski, J.4
  • 14
    • 0017380736 scopus 로고
    • Electrical double layer, zeta potential, and electrophoretic charge of double-stranded DNA
    • Schellman, J. A., and D. Stigter. 1977. Electrical double layer, zeta potential, and electrophoretic charge of double-stranded DNA. Biopolymers. 16:1415-1434.
    • (1977) Biopolymers , vol.16 , pp. 1415-1434
    • Schellman, J.A.1    Stigter, D.2
  • 15
    • 0000166387 scopus 로고
    • Fluorescence studies of nucleic acids: Dynamics, rigidities, and structures
    • J. R. Lakowicz, editor. Plenum, New York
    • Schurr, J. M., B. S. Fujimoto, P. Wu, and L. Song. 1992. Fluorescence studies of nucleic acids: dynamics, rigidities, and structures. In Topics in Fluorescence Spectroscopy, Vol. 3, J. R. Lakowicz, editor. Plenum, New York. 137-229.
    • (1992) Topics in Fluorescence Spectroscopy , vol.3 , pp. 137-229
    • Schurr, J.M.1    Fujimoto, B.S.2    Wu, P.3    Song, L.4
  • 16
    • 0030024985 scopus 로고    scopus 로고
    • Overstretching B-DNA: The elastic response of individual double-stranded and single-stranded DNA molecules
    • Smith, S., Y. Cui, and C. Bustamante. 1996. Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules. Science. 271:795-799.
    • (1996) Science , vol.271 , pp. 795-799
    • Smith, S.1    Cui, Y.2    Bustamante, C.3
  • 17
    • 0017389770 scopus 로고
    • Interactions of highly charged colloidal cylinders with applications to double stranded DNA
    • Stigter, D. 1977. Interactions of highly charged colloidal cylinders with applications to double stranded DNA. Biopolymers. 16:1435-1448.
    • (1977) Biopolymers , vol.16 , pp. 1435-1448
    • Stigter, D.1
  • 18
    • 0242644023 scopus 로고
    • Translational friction coefficients of rigid, symmetric top molecules. Application to circular cylinders
    • Tirado, M. M., and J. Garcia de la Torre. 1979. Translational friction coefficients of rigid, symmetric top molecules. Application to circular cylinders. J. Chem. Phys. 71:2581-2587.
    • (1979) J. Chem. Phys. , vol.71 , pp. 2581-2587
    • Tirado, M.M.1    De La Garcia Torre, J.2
  • 19
    • 26544473673 scopus 로고
    • Rotational dynamics of rigid, symmetric top molecules. Application to circular cylinders
    • Tirado, M. M., and J. Garcia de la Torre. 1980. Rotational dynamics of rigid, symmetric top molecules. Application to circular cylinders. J. Chem. Phys. 73:1986-1993.
    • (1980) J. Chem. Phys. , vol.73 , pp. 1986-1993
    • Tirado, M.M.1    De La Garcia Torre, J.2
  • 20
    • 0029159251 scopus 로고
    • Modeling of long range electrostatic interactions in DNA
    • Vologodskii, A., and N. Cozzarelli. 1995. Modeling of long range electrostatic interactions in DNA. Biopolymers. 35:289-296.
    • (1995) Biopolymers , vol.35 , pp. 289-296
    • Vologodskii, A.1    Cozzarelli, N.2
  • 21
    • 0002632975 scopus 로고
    • An introduction to the geometry and topology of DNA structure
    • CRC Press, Boca Raton, FL
    • White, J. H. 1989. An introduction to the geometry and topology of DNA structure. In Mathematical Methods for DNA Sequences. CRC Press, Boca Raton, FL.
    • (1989) Mathematical Methods for DNA Sequences
    • White, J.H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.