Characterization of trinucleotide SSR motifs in wheat

Theoretical and Applied Genetics

Volumn 104, Issue 2-3, 2002, Pages 286-293

  Song, Q J ^a   Fickus, E W ^a   Cregan, P B ^a  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

Microsatellites; Molecular markers; Simple sequence repeat (SSR); Trinucleotide motifs; Wheat

Indexed keywords

CLONING; GENES;

WHEAT;

CROPS;

EMBRYOPHYTA; FELIS CATUS; TRITICUM AESTIVUM;

EID: 0036941498     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s001220100698     Document Type: Article

References (42)

1. Akagi H, Yokozeki Y, Inagaki A, Fujimura T (1996) Microsatellite DNA markers for rice chromosomes. Theor Appl Genet 93:1071-1077
2. Akkaya MS, Bhagwat AA, Cregan PB (1992) Length polymorphisms of simple sequence repeat DNA in soybean. Genetics 132:1131-1139
3. Ayres NM, McClung AM, Larkin PD, Bligh HFJ, Jones CA, Park WD (1997) Microsatellites and a single nucleotide polymorphism differentiate apparent amylose classes in an extended pedigree of US rice germ plasm. Theor Appl Genet 94: 773-778
4. Becker J, Heun M (1995) Barley microsatellites: Allele variation and mapping. Plant Mol Biol 27:835-845
5. Bligh HFJ, Blackhall NW, Edwards KJ, McClung AM (1999) Using amplified fragment length polymorphisms and simple sequence length polymorphisms to identify cultivars of brown and white milled rice. Crop Sci 39:1715-1721
6. Broun P, Tanksley SD (1996) Characterization and genetic mapping of simple repeat sequences in the tomato genome. Mol Gen Genet 250:39-49
7. Chao S, Sharp PJ, Worland AJ, Warham EJ, Koebner RMD, Gale MD (1989) RFLP-based genetic maps of wheat homologous group-7 chromosomes. Theor Appl Genet 78:495-504
8. Cregan PB, Bhagwat AA, Akkaya MS, Jiang RW (1994) Microsatellite fingerprinting and mapping of soybean. Methods Mol Cell Biol 5:49-61
9. Cregan PB, Jarvik T, Bush AL, Shoemaker RC, Lark KG, Kahler AL, VanToai TT, Lohnes DG, Chung J, Specht JE (1999) An integrated genetic linkage map of the soybean genome. Crop Sci 39:1464-1490
10. Diwan N, Cregan PB (1997) Automated sizing of fluorescent-labelled simple sequence repeat (SSR) markers to assay genetic variation in soybean. Theor Appl Genet 95:723-733
11. Edwards A, Civitello A, Hammond HA, Caskey CT (1991) DNA typing and genetic mapping with trimeric and tetrameric tandem repeats. Am J Hum Genet 49:746-756
12. Fahima T, Röder MS, Grama A, Nevo E (1998) Microsatellite DNA polymorphism divergence in Triticum dicoccoides accessions highly resistant to yellow rust. Theor Appl Genet 96:187-195
13. Gastier JM, Pulido JC, Sunden S, Brody T, Buetow KH, Murray JC, Weber JL, Hudson TJ, Sheffield VC, Duyk GM (1995) Survey of trinucleotide repeats in the human genome: Assessment of their utility as genetic markers. Hum Mol Genet 4:1829-1836
14. Hearne CM, Ghosh S, Todd JA (1992) Microsatellites for linkage analysis of genetic traits. Trends Genet 8:288-294
15. Jin W, Palmer RG, Horner HT, Shoemaker RC (1998) Molecular mapping of a male-sterile gene in soybean. Crop Sci 38:1681-1685
16. Keim P, Olson T, Shoemaker R (1988) A rapid protocol for isolating soybean DNA. Soybean Genet Newslett 15:150-152
17. Korzun V, Boerner A, Worland AJ, Law CN, Röder MS (1997) Application of microsatellite markers to distinguish intervarietal chromosome substitute lines of wheat Triticum aestivum L. Euphytica 95:149-155
18. Kostia S, Varvio SL, Vakkari P, Pulkkinen P (1995) Microsatellite sequences in a conifer, Pinus sylvestris. Genome 38:1244-1248
19. Lagercrantz U, Ellegren H, Andersson L (1993) The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates. Nucleic Acids Res 21:1111-1115
20. Liu ZW, Biyashev RM, Saghai Maroof MA (1996) Development of simple sequence repeat DNA markers and their integration into barley linkage map. Theor Appl Genet 93:869-876
21. Morgante M, Olivieri AM (1993) PCR-amplified microsatellites as markers in plant genetics. Plant J 3:175-182
22. Mian MAR, Wang T, Phillips DV, Alvernaz J, Boerma HR (1999) Molecular mapping of the Rcs3 gene for resistance to frogeye leaf spot in soybean. Crop Sci 39:1687-1691
23. Pestsova E, Ganal MW, Röder MS (2000a) Isolation and mapping of microsatellite markers specific for the D genome of bread wheat Genome 43:689-697
24. Pestsova E, Salina E, Börner A, Korzun V, Maystrenko OI, Röder MS. (2000b) Microsatellites confirm the authenticity of intervarietal chromosome substitution lines of wheat (Triticum aestivum L.). Theor Appl Genet 101: 95-99
25. Pestsova E, Korzun V, Goncharov NP, Hammer K, Ganal MW, Röder MS (2000c) Microsatellite analysis of Aegilops tauschii germplasm. Theor Appl Genet 101:100-106
26. Panaud O, Chen X, McCouch SR (1996) Development of microsatellite markers and characterization of simple sequence length polymorphism (SSLP) in rice (Oryza sativa L.). Mol Gen Genet 252:597-607
27. Pfeiffer A, Olivieri AM, Morgante M (1997) Identification and characterization of microsatellites in Norway spruce (Picea abies K.). Genome 40:411-419
28. Plaschke J, Ganal MW, Röder MS (1995) Detection of genetic diversity in closely related bread wheat using microsatellite markers. Theor Appl Genet 91:1001-1007
29. Röder MS, Plaschke J, König SU, Börner A, Sorrells ME, Tanksley SD, Ganal MW (1995) Abundance, variability and chromosome location of microsatellites in wheat. Mol Gen Genet 246:327-333
30. Röder MS, Korzun V, Wendehake K, Gill BS, Ganal MW (1998a) The physical mapping of microsatellite markers in wheat. Genome 41:278-283
31. Röder MS, Korzun V, Wendehake K, Plaschke J, Tixier MH, Leroy P, Ganal MW (1998b) A microsatellite map of wheat. Genetics 149:2007-2023
32. Rongwen J, Akkaya MS, Lavi U, Cregan PB (1995) The use of microsatellite DNA markers for soybean genotype identification. Theor Appl Genet 90:43-48
33. Senior ML, Chin ECL, Lee M, Smith JSC, Stuber CW (1996) Simple sequence repeat markers developed from maize sequences found in the GenBank database: Map construction. Crop Sci 36:1676-1683
34. Sheffield VC, Weber JL, Buetow KH, Murray JC, Even DA, Wiles K, Gastier JM, Pulido JC, Yandava C, Sunden S, Mattes G, Businga T, McClain A, Beck J, Scherpier T, Gilliam J, Zhong J, Duyk GM (1995) A collection of tri- and tetra-nucleotide repeat markers used to generate a high quality, high resolution human genome-wide linkage map. Hum Mol Genet 4: 1837-1844
35. Smith DN, Devey ME (1994) Occurrence and inheritance of microsatellites in Pinus radiata. Genome 37:977-983
36. Song QJ, Shim KM, Heo NK, Kim NS (1998a) Genotype fingerprinting, differentiation and association between morphological traits and SSR loci of soybean landraces. Plant Resourc 1:81-91
37. Song QJ, Kim NS (1998b) SSRFING: A BASIC program for plant fingerprinting with SSR information. Korea J Genet 20:29-34
38. Song QJ, Quigley CV, Nelson RL, Carter TE, Boerma HR, Strachan JL, Cregan PB (1999) A selected set of trinucleotide simple sequence repeat markers for soybean cultivar identification. Plant Vat Seeds 12:207-220
39. Sun GL, Salomon B, Bothmer RV (1998) Analysis of tetraploid Elymus species using wheat microsatellite markers and RAPD markers. Genome 40:086-814
40. Weber JL, May PE (1989) Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am J Hum Genet 44:388-396
41. Worland AJ, Korzun V, Röder MS, Ganal MW, Law CN (1998) Genetic analysis of the dwarfing gene Rht8 in wheat. Part II. The distribution and adaptive significance of allelic variants at the Rht8 locus of wheat as revealed by microsatellite screening. Theor Appl Genet 96:1110-1120
42. Wu KS, Tanksley SD (1993) Abundance, polymorphism and genetic mapping of microsatellites in rice. Mol Gen Genet 244:225-235