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Volumn 304, Issue 2, 2002, Pages 392-402

Analysis, quantification, and evolutionary consequences of HIV-1 in vitro recombination

Author keywords

[No Author keywords available]

Indexed keywords

VIRUS DNA; VIRUS ENVELOPE PROTEIN;

EID: 0036933453     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.2002.1657     Document Type: Article
Times cited : (17)

References (37)
  • 1
    • 0032566768 scopus 로고    scopus 로고
    • Why sex and recombination?
    • Barton, N. H., and Charlesworth, B. (1998). Why sex and recombination? Science 281(5385), 1986-1990.
    • (1998) Science , vol.281 , Issue.5385 , pp. 1986-1990
    • Barton, N.H.1    Charlesworth, B.2
  • 3
    • 0034790221 scopus 로고    scopus 로고
    • Different evolutionary patterns are found within human immunodeficiency virus type 1-infected patients
    • Casado, C., Garcia, S., Rodriguez, C., del Romero, J., Bello, G., and Lopez-Galindez, C. (2001). Different evolutionary patterns are found within human immunodeficiency virus type 1-infected patients. J. Gen. Virol. 82(Pt. 10), 2495-2508.
    • (2001) J. Gen. Virol. , vol.82 , Issue.PART 10 , pp. 2495-2508
    • Casado, C.1    Garcia, S.2    Rodriguez, C.3    Del Romero, J.4    Bello, G.5    Lopez-Galindez, C.6
  • 4
    • 0004131381 scopus 로고    scopus 로고
    • Cold Spring Harbor Laboratory Press, New York
    • Coffin, J., Hughes, S., and Varmus, A. H. (1997). "Retroviruses." Cold Spring Harbor Laboratory Press, New York.
    • (1997) Retroviruses
    • Coffin, J.1    Hughes, S.2    Varmus, A.H.3
  • 6
    • 0002424854 scopus 로고    scopus 로고
    • Coreceptor use by primate lentivirus
    • B. Korber, C. Kuiken, B. Folley, B. Hahn, F. McCutchan, J. Mellors, and J. Sodroski, Eds. Theoretical Biology and Biophysics, Group T 10, Los Alamos National Laboratory, Los Alamos, NM
    • Doms, R. W., Edinger, A. L., and Moore, J. P. (1998). Coreceptor use by primate lentivirus. In "Human Retrovirus and AIDS" (B. Korber, C. Kuiken, B. Folley, B. Hahn, F. McCutchan, J. Mellors, and J. Sodroski, Eds.), pp. III-36-79. Theoretical Biology and Biophysics, Group T 10, Los Alamos National Laboratory, Los Alamos, NM.
    • (1998) Human Retrovirus and AIDS
    • Doms, R.W.1    Edinger, A.L.2    Moore, J.P.3
  • 7
    • 17144461473 scopus 로고    scopus 로고
    • Multiple molecular pathways for fitness recovery of an RNA virus debilitated by operation of Muller's ratchet
    • Escarmis, C., Davila, M., and Domingo, E. (1999). Multiple molecular pathways for fitness recovery of an RNA virus debilitated by operation of Muller's ratchet. J. Mol. Biol. 285(2), 495-505.
    • (1999) J. Mol. Biol. , vol.285 , Issue.2 , pp. 495-505
    • Escarmis, C.1    Davila, M.2    Domingo, E.3
  • 8
  • 9
    • 0022404296 scopus 로고
    • Infection of HTLV-III/LAV in HTLV-I-carrying cells MT-2 and MT-4 and application in a plaque assay
    • Harada, S., Koyanagi, Y., and Yamamoto, N. (1985). Infection of HTLV-III/LAV in HTLV-I-carrying cells MT-2 and MT-4 and application in a plaque assay. Science 229, 563-566.
    • (1985) Science , vol.229 , pp. 563-566
    • Harada, S.1    Koyanagi, Y.2    Yamamoto, N.3
  • 10
    • 0035903007 scopus 로고    scopus 로고
    • High proportion of unrelated HIV-1 intersubtype recombinants in the Mbeya region of southwest Tanzania
    • Hoelscher, M., Kim, B., Maboko, L., Mhalu, F., von Sonnenburg, F., Birx, D. L., and McCutchan, F. E. (2001). High proportion of unrelated HIV-1 intersubtype recombinants in the Mbeya region of southwest Tanzania. AIDS 15(12), 1461-1470.
    • (2001) AIDS , vol.15 , Issue.12 , pp. 1461-1470
    • Hoelscher, M.1    Kim, B.2    Maboko, L.3    Mhalu, F.4    Von Sonnenburg, F.5    Birx, D.L.6    McCutchan, F.E.7
  • 11
    • 0026070176 scopus 로고
    • Quantitation of relative fitness and great adaptability of clonal populations of RNA viruses
    • Holland, J. J., de la Torre, J. C., Clarke, D. K., and Duarte, E. (1991). Quantitation of relative fitness and great adaptability of clonal populations of RNA viruses. J. Virol. 65(6), 2960-2967.
    • (1991) J. Virol. , vol.65 , Issue.6 , pp. 2960-2967
    • Holland, J.J.1    De la Torre, J.C.2    Clarke, D.K.3    Duarte, E.4
  • 12
    • 0025095253 scopus 로고
    • Genetic consequences of packaging two RNA genomes in one retroviral particle: Pseudodiploidy and high rate of genetic recombination
    • Hu, W. S., and Temin, H. M. (1990a). Genetic consequences of packaging two RNA genomes in one retroviral particle: Pseudodiploidy and high rate of genetic recombination. Proc. Natl. Acad. Sci. USA 87(4), 1556-1560.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , Issue.4 , pp. 1556-1560
    • Hu, W.S.1    Temin, H.M.2
  • 13
    • 0025095253 scopus 로고
    • Genetic consequences of packing two RNA genomes in one retroviral particle: Pseudodiploidy and high rate of genetic recombination
    • Hu, W. S., and Temin, H. M. (1990b). Genetic consequences of packing two RNA genomes in one retroviral particle: Pseudodiploidy and high rate of genetic recombination. Proc. Natl. Acad. Sci. USA 87, 1556-1560.
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 1556-1560
    • Hu, W.S.1    Temin, H.M.2
  • 14
    • 0033977268 scopus 로고    scopus 로고
    • High rate of recombination throughout the human immunodeficiency virus type 1 genome
    • Jetzt, A. E., Yu, H., Klarmann, G. J., Ron, Y., Preston, B. D., and Dougherty, J. P. (2000). High rate of recombination throughout the human immunodeficiency virus type 1 genome. J. Virol. 74(3), 1234-1240.
    • (2000) J. Virol. , vol.74 , Issue.3 , pp. 1234-1240
    • Jetzt, A.E.1    Yu, H.2    Klarmann, G.J.3    Ron, Y.4    Preston, B.D.5    Dougherty, J.P.6
  • 15
    • 0031555638 scopus 로고    scopus 로고
    • Primary infections with HIV-1 of women and their offspring in Rwanda. Findings of heterogeneity at seroconversion, coinfection, and recombinations of HIV-1 subtypes A and C
    • Kampinga, G. A., Simonon, A., Perre, P. V. D., Karita, E., Msellati, P., and Goudsmit, J. (1997). Primary infections with HIV-1 of women and their offspring in Rwanda. Findings of heterogeneity at seroconversion, coinfection, and recombinations of HIV-1 subtypes A and C. Virology 227, 63-76.
    • (1997) Virology , vol.227 , pp. 63-76
    • Kampinga, G.A.1    Simonon, A.2    Perre, P.V.D.3    Karita, E.4    Msellati, P.5    Goudsmit, J.6
  • 16
    • 0028874043 scopus 로고
    • Retroviral recombination can lead to linkage of reverse transcriptase mutations that confer increased zidovudine resistance
    • Kellam, P., and Larder, B. A. (1995). Retroviral recombination can lead to linkage of reverse transcriptase mutations that confer increased zidovudine resistance. J. Virol. 69(2), 669-674.
    • (1995) J. Virol. , vol.69 , Issue.2 , pp. 669-674
    • Kellam, P.1    Larder, B.A.2
  • 19
    • 0036139211 scopus 로고    scopus 로고
    • MEGA2: Molecular evolutionary genetics analysis software
    • Kumar, S., Tamura, K., Jakobsen, I. B., and Nei, M. (2001). MEGA2: Molecular evolutionary genetics analysis software. Bioinformatics 17(12), 1244-1245.
    • (2001) Bioinformatics , vol.17 , Issue.12 , pp. 1244-1245
    • Kumar, S.1    Tamura, K.2    Jakobsen, I.B.3    Nei, M.4
  • 20
    • 0030763038 scopus 로고    scopus 로고
    • The rapid spread of recombinants during a natural in vitro infection with two human immunodeficiency virus type 1 strains
    • Kuwata, T., Miyazaki, Y., Igarashi, T., Takehisa, J., and Hayami, M. (1997). The rapid spread of recombinants during a natural in vitro infection with two human immunodeficiency virus type 1 strains. J. Virol. 71, 7088-7091.
    • (1997) J. Virol. , vol.71 , pp. 7088-7091
    • Kuwata, T.1    Miyazaki, Y.2    Igarashi, T.3    Takehisa, J.4    Hayami, M.5
  • 21
    • 0026593989 scopus 로고
    • Genetic recombination in RNA viruses
    • Lai, M. M. (1992). Genetic recombination in RNA viruses. Curr. Top. Microbiol. Immunol. 176, 21-32.
    • (1992) Curr. Top. Microbiol. Immunol. , vol.176 , pp. 21-32
    • Lai, M.M.1
  • 23
    • 0029075130 scopus 로고
    • Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase
    • Mansky, L. M., and Temin, H. M. (1995). Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase. J. Virol. 69, 5087-5094.
    • (1995) J. Virol. , vol.69 , pp. 5087-5094
    • Mansky, L.M.1    Temin, H.M.2
  • 24
    • 0033773876 scopus 로고    scopus 로고
    • Understanding the genetic diversity of HIV-1
    • McCutchan, F. E. (2000). Understanding the genetic diversity of HIV-1. AIDS 14(Suppl. 3), S31-S44.
    • (2000) AIDS , vol.14 , Issue.SUPPL. 3
    • McCutchan, F.E.1
  • 25
    • 0029973141 scopus 로고    scopus 로고
    • Recombination leads to the rapid emergence of HIV-1 dually resistant mutants under selective drug pressure
    • Moutouh, L., Corbeil, J., and Richman, D. D. (1996). Recombination leads to the rapid emergence of HIV-1 dually resistant mutants under selective drug pressure. Proc. Natl. Acad. Sci. USA 93, 6106-6111.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 6106-6111
    • Moutouh, L.1    Corbeil, J.2    Richman, D.D.3
  • 26
    • 2442761729 scopus 로고    scopus 로고
    • Nucleotide diversity in three different genomic regions of Venezuelan HIV type 1 isolates: A subtyping update
    • Quiñones-Mateu, M. E., and Domingo, E. (1999). Nucleotide diversity in three different genomic regions of Venezuelan HIV type 1 isolates: A subtyping update. AIDS Res. Hum. Retroviruses 15(1), 73-79.
    • (1999) AIDS Res. Hum. Retroviruses , vol.15 , Issue.1 , pp. 73-79
    • Quiñones-Mateu, M.E.1    Domingo, E.2
  • 29
    • 0027413289 scopus 로고
    • Dilute passage promotes expression of genetic and phenotypic variants of human immunodeficiency virus type 1 in cell culture
    • Sánchez-Palomino, S., Rojas, J. M., Martínez, M. A., Fenyö, E. M., Nájera, R., Domingo, E., and López-Galíndez, C. (1993a). Dilute passage promotes expression of genetic and phenotypic variants of human immunodeficiency virus type 1 in cell culture. J. Virol. 67(5), 2938-2943.
    • (1993) J. Virol. , vol.67 , Issue.5 , pp. 2938-2943
    • Sánchez-Palomino, S.1    Rojas, J.M.2    Martínez, M.A.3    Fenyö, E.M.4    Nájera, R.5    Domingo, E.6    López-Galíndez, C.7
  • 30
    • 0027413289 scopus 로고
    • Dilute passage promotes expression of genetic and phenotypic variants of human immunodeficiency virus type 1 in cell culture
    • Sánchez-Palomino, S., Rojas, J. M., Martínez, M. A., Fenÿo, E. M., Nájera, R., Domingo, E., and López-Galíndez, C. (1993b). Dilute passage promotes expression of genetic and phenotypic variants of human immunodeficiency virus type 1 in cell culture. J. Virol. 67, 2938-2943.
    • (1993) J. Virol. , vol.67 , pp. 2938-2943
    • Sánchez-Palomino, S.1    Rojas, J.M.2    Martínez, M.A.3    Fenÿo, E.M.4    Nájera, R.5    Domingo, E.6    López-Galíndez, C.7
  • 31
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson, J., Higgins, D., and Gibson, T. (1994). CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.1    Higgins, D.2    Gibson, T.3
  • 33
    • 0031936306 scopus 로고    scopus 로고
    • Neutralization sensitivity of human immunodeficiency virus type 1 primary isolates to antibodies and CD4-based reagents is independent of coreceptor usage
    • Trkola, A., Ketas, T., Kewalramani, V. N., Endorf, F., Binley, J. M., Katinger, H., Robinson, J., Littman, D. R., and Moore, J. P. (1998). Neutralization sensitivity of human immunodeficiency virus type 1 primary isolates to antibodies and CD4-based reagents is independent of coreceptor usage. J. Virol. 72, 1876-1885.
    • (1998) J. Virol. , vol.72 , pp. 1876-1885
    • Trkola, A.1    Ketas, T.2    Kewalramani, V.N.3    Endorf, F.4    Binley, J.M.5    Katinger, H.6    Robinson, J.7    Littman, D.R.8    Moore, J.P.9
  • 34
    • 0001787808 scopus 로고
    • Reverse transcriptase (RT) activity assay
    • A. A. A. B. D. Walker, Ed. Stockton Press, New York
    • Victoria Johnson, R. E. B. A. J. K. (1990). Reverse transcriptase (RT) activity assay. In "Techniques in HIV Research" (A. A. A. B. D. Walker, Ed.), pp. 98-102. Stockton Press, New York.
    • (1990) Techniques in HIV Research , pp. 98-102
    • Victoria Johnson, R.E.B.A.J.1
  • 35
    • 0032579886 scopus 로고    scopus 로고
    • Retroviral recombination is nonrandom and sequence dependent
    • Wooley, D. P., Bircher, L. A., and Smith, R. A. (1998). Retroviral recombination is nonrandom and sequence dependent. Virology 243(1), 229-234.
    • (1998) Virology , vol.243 , Issue.1 , pp. 229-234
    • Wooley, D.P.1    Bircher, L.A.2    Smith, R.A.3
  • 36
    • 0345471842 scopus 로고    scopus 로고
    • Drastic fitness loss in human immunodeficiency virus type 1 upon serial bottleneck events
    • Yuste, E., Sánchez-Palomino, S., Casado, C., Domingo, E., and López-Galíndez, C. (1999). Drastic fitness loss in human immunodeficiency virus type 1 upon serial bottleneck events. J. Virol. 73(4), 2745-2751.
    • (1999) J. Virol. , vol.73 , Issue.4 , pp. 2745-2751
    • Yuste, E.1    Sánchez-Palomino, S.2    Casado, C.3    Domingo, E.4    López-Galíndez, C.5
  • 37
    • 0028274130 scopus 로고
    • Retrovirus recombination depends on the length of sequence identity and is not error prone
    • Zhang, J., and Temin, H. M. (1994). Retrovirus recombination depends on the length of sequence identity and is not error prone. J. Virol. 68, 2409-2414.
    • (1994) J. Virol. , vol.68 , pp. 2409-2414
    • Zhang, J.1    Temin, H.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.