Genetic, physical, and informatics resources for maize. On the road to an integrated map

Plant Physiology

Volumn 130, Issue 4, 2002, Pages 1598-1605

  Cone, Karen C ^a   McMullen, Michael D ^a,b   Bi, Irie Vroh ^a   Davis, Georgia L ^a   Yim, Young Sun ^a   Gardiner, Jack M ^a   Polacco, Mary L ^a,b   Sanchez Villeda, Hector ^a   Fang, Zhiwei ^a   Schroeder, Steven G ^a   Havermann, Seth A ^a   Bowers, John E ^c   Paterson, Andrew H ^c   Soderlund, Carol A ^d   Engler, Fred W ^d   Wing, Rod A ^d   Coe Jr , Edward H ^a,b  

^a UNIVERSITY OF MISSOURI   (United States)

^b AGRICULTURAL RESEARCH SERVICE   (United States)

^c UNIVERSITY OF GEORGIA   (United States)

^d UNIVERSITY OF ARIZONA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EMBRYOPHYTA; ZEA MAYS;

EID: 0036909633     PISSN: 00320889     EISSN: None     Source Type: Journal    
DOI: 10.1104/pp.012245     Document Type: Review

References (21)

1. Altschul SF, Madden TL, Schaffer AA, Zhange J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402
2. Arumuganathan K, Earle ED (1991) Nuclear DNA content of some important plant species. Plant Mol Biol Rep 9: 208-218
3. Bennetzen J (2000) Transposable element contributions to plant gene and genome evolution. Plant Mol Biol 42: 251-269
4. Chen M, Presting G, Barbazuk W, Goicoechea J, Blackmon B, Fang G, Kim H, Frisch D, Yu Y, Sun S et al. (2002) An integrated physical and genetic map of the rice genome. Plant Cell 14: 537-545
5. Coe E, Cone K, McMullen M, Chen S, Davis G, Gardiner J, Liscum E, Polacco M, Paterson A, Sanchez-Villeda H et al. (2002) Access to the maize genome: An integrated physical and genetic map. Plant Physiol 128: 9-12
6. Davis G, Musket T, Melia-Hancock S, Duru N, Sharopova N, Schultz L, McMullen MD, Sanchez-Villeda H, Schroeder S, Garcia AA (2001) The intermated B73 x Mo17 genetic map: A community resource. Maize Genet Conference Abstracts 43: W15, P62
7. Draye X, Lin Y, Qian X, Bowers J, Burow G, Morrell P, Peterson D, Presting GR, Wing RA, Paterson AH (2001) Toward integration of comparative genetic, physical, diversity, and cytomolecular maps for grasses and grains, using the Sorghum genome as a foundation. Plant Physiol 125: 1325-1341
8. Gregory SG, Sekhon M, Schein J, Zhao S, Osoegawa K, Scott CE, Evens RS, Burridge PW, Cox TV, Fox CA et al. (2002) A physical map of the mouse genome. Nature 418: 743-750
9. International Human Genome Mapping Consortium (2001) A physical map of the human genome. Nature 409: 934-941
10. Klein P, Klein R, Cartinhour S, Ulanch P, Dong J, Obert J, Morishige D, Schlueter S, Childess K, Ale Met al. (2000) A high throughput AFLP-based method for constructing integrated genetic and physical maps: Progress toward a sorghum genome map. Genome Res 10: 789-907
11. Lander ES, Waterman MS (1988) Genomic mapping by fingerprinting random clones: A mathematical analysis. Genomics 2: 231-239
12. Lee M, Sharopova N, Beavis W, Grant D, Katt M, Blair D, Hallauer A (2002) Expanding the genetic map of maize with the intermated B73 x Mo17 (IBM) population. Plant Mol Biol 48: 453-461
13. Marra M, Kucaba T, Dietrich N, Green E, Brownstein B, Wilson R, McDonald K, Hillier L, McPherson J, Waterston R (1997) High throughput fingerprint analysis of large-insert clones. Genome Res 11: 1072-1084
14. Myers BC, Tingey SV, Morgante M (2001) Abundance, distribution, and transcriptional activity of repetitive elements in the maize genome. Genome Res 11: 1660-1676
15. Ross M, LaBrie S, McPherson J, Stanton v Jr (1999) Screening large-insert libraries by hybridization. In A Boyle, ed, Current Protocols in Human Genetics. Wiley, New York, pp 5.6.1-5.6.2.
16. Sharopova N, McMullen MD, Schultz L, Schroeder S, Sanchez-Villeda H, Gardiner J, Bergstrom D, Houchins K, Melia-Hancock S, Musket T et al. (2002) Development and mapping of SSR markers for maize. Plant Mol Biol 48: 463-481
17. Soderlund C, Humphray S, Dunham A, French L (2000) Contigs built with fingerprints, markers and FPC v4.7. Genome Res 10: 1772-1787
18. Soderlund C, Longden I, Mott R (1997) FPC: A system for building contigs from restriction fingerprinted clones. Comput Appl Biosci 13: 523-535
19. Sulston J, Mallett F, Durvin R, Horsnell T (1989) Image analysis of restriction enzyme fingerprint audioradiograms. Comput Appl Biosci 13: 101-106
20. Tomkins J, Davis G, Main D, Yim Y, Duru N, Musket T, Goicoechea J, Frisch D, Coe EH Jr, Wing R (2002) Construction and characterization of a deep-coverage bacterial artificial chromosome library for maize. Crop Sci 42: 928-933
21. Yim Y-S, Davis G, Duru N, Musket T, Linton EW, Messing JW, McMullen MD, Soderlund C, Polacco M, Gardiner J, Coe EH Jr (2002) Characterization of three maize BAC libraries toward anchoring of the physical map to the genetic map using high density BAC filter hybrization. Plant Physiol 130: 1686-1696