Signatures of population expansion in microsatellite repeat data

Genetics

Volumn 148, Issue 4, 1998, Pages 1921-1930

  Kimmel, Marek ^a   Chakraborty, Ranajit ^b   King, J Patrick ^a   Bamshad, Michael ^c   Watkins, W Scott ^c   Jorde, Lynn B ^c  

^a Rice University   (United States)

^b UNIVERSITY OF TEXAS   (United States)

^c UNIVERSITY OF UTAH SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MICROSATELLITE DNA;

AFRICA; ARTICLE; ASIA; EUROPE; GENE LOCUS; GENETIC VARIABILITY; HOMOZYGOSITY; HUMAN; MUTATION; NUCLEOTIDE REPEAT; POPULATION GROWTH; PRIORITY JOURNAL; RACE DIFFERENCE;

GENETICS, POPULATION; HUMANS; MICROSATELLITE REPEATS; MODELS, GENETIC; MODELS, STATISTICAL; POPULATION DYNAMICS;

EID: 0031916646     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (45)

1. BERTORELLE, G., and M. SLATKIN, 1995 Number of segregating sites in expanding human populations, with implications for estimates of demographic parameters. Mol. Biol. Evol. 12: 887-892.
2. BOWCOCK, A. M., R.-A. LINARES, J. TOMFOHRDE, E. MINCH, J. R. KIDD and L. L. CAVALLI-SFORZA, 1994 High resolution of human evolutionary trees with polymorphic microsatellites. Nature 368: 455-457.
3. CANN, R., M. STONEKING and A. C. WILSON, 1987 Mitochondrial DNA and human evolution. Nature 325: 31-36.
4. CAKRABORTY, R., and M. NEI, 1982 Genetic differentiation of quantitative characters between populations of species. I. Mutation and random genetic drift. Genet. Res. Camb. 39: 303-314.
5. CHAKRABORTY, R., and L. JIN, 1993a A unified approach to study hypervariable polymorphisms: statistical considerations of determining relatedness and population distances, pp. 153-175 in DNA Fingerprinting: State of the Science, edited by S. D. J. PENA, R. CHAKRABORTY, J. T. EPPLEN and A. J. JEFFREYS. Birkhauser, Basel.
6. CHAKRABORTY, R., and L. JIN, 1993b Determination of relatedness between individuals by DNA fingerprinting. Hum. Biol. 65:875-895.
7. CHAKRABORTY, R., M. KIMMEL, D. N. STIVERS, R. DEKA and L. J. DAVISON, 1997 Relative mutation rates at di-, tri-, and tetranucleotide microsatellite loci. Proc. Natl. Acad. Sci. USA 94: 1041-1046.
8. COX-MATISE, T., M. PERLIN and A. CHAKRAVARTI, 1994 Automated construction of genetic linkage maps using an expert system (multi-Map): A human genome linkage map. Nature Genet. 6: 384-390.
9. DEKA, R., M. D. SHRIVER, L. M. Yu, R. E. FERRELL and R. CHAKRABORTY, 1995 Intra-and inter-population diversity at short tandem repeat loci in diverse populations of the world. Electrophoresis 16: 1659-1664.
10. DI RIENZO, A., and A. C. WILSON, 1991 Branching pattern in the evolutionary tree from human mitochondrial DNA. Proc. Natl. Acad. Sci. USA 88: 1597-1601.
11. DI RIENZO, A., A. C. PETERSON, J. C. GARZA, A. M. VALDES, M. SLATKIN el at., 1994 Mutational process of simple-sequence repeat loci in human populations journal. Proc. Natl. Acad. Sci. USA 91: 3166-3170.
12. EWENS, W. J., 1979 Mathematical Population Genetics. Springer-Verlag, New York.
13. GILBERT, D. A., N. LEHMAN, S. J. O'BRIEN and R. K. WAYNE, 1990 Genetic fingerprinting reflects population differentiation in California Channel Island fox. Nature 344: 764-767.
14. GOLDSTEIN, D. B., A. R. LINARES, M. W. FELDMAN and L. L. CAVALLI-SFORZA, 1995b An evaluation of genetic distances for use with microsatellite loci. Genetics 139: 463-471.
15. GYAPAY, G., J. MORISSETTE, A. VIGNAL, C. DIB, C. FIZAMES et al., 1994 The 1993-1994 Genethon human genetic linkage map. Nature Genet. 7: 246-339.
16. HANIS, C. L., E. BOERWINKLE, R. CHAKRABORTY, D. L. ELLSWORTH, P. CONCANNON et al., 1996 A genome-wide search for human non-insulin-dependent (type 2) diabetes genes reveals a major susceptibility locus on chromosome 2. Nature Genet. 13: 161-166.
17. HARPENDING, H. C., C. S. T. SHERRY, A. R. ROGERS and M. STONEKING, 1993 The genetic structure of ancient human populations. Curr. Anthropol. 34: 483-496.
18. JEFFREYS, A. J., K. TAMAKI, A. MACLEOD, D. G. MONCKTON, D. L. NEIL et al., 1994 Complex gene conversion events in germline mutation at human minisatellites. Nature Genet. 6: 136-145.
19. JIN, L., C. MACAUBAS, J. MALLMAYAR, A. KIMURA and E. MIGNOT, 1996 Mutation rate varies among alleles at a microsatellite locus: phenotypic evidence. Proc. Nat. Acad. Sci. USA 93: 15285-15288.
20. JORDE, L. B., M. J. BAMSHAD, W. S. WATKINS, R. ZENGER, A. E. FRALEY et al., 1995 Origins and affinities of modern humans: A comparison of mitochondrial and nuclear genetic data. Am. J. Hum. Genet. 57: 523-538.
21. JORDE, L. B., A. R. ROGERS, W. S. WATKINS, P. KRAKOWIAK, S. SUNG et al., 1997 Microsatellite diversity and the demographic history of modern humans. Proc. Natl. Acad. Sci. USA 94: 3100-3103.
22. KIMMEL, M., and R. CHAKRABORTY, 1996 Measures of variation at DNA repeat loci under a general stepwise mutation model. Theor. Pop. Biol. 50: 345-367.
23. KIMMEL, M., R. CHAKRABORTY, D. N. STIVERS and R. DEKA, 1996 Dynamics of repeat polymorphisms under forward-backward mutation model: Within-and between-population variability at microsatellite loci. Genetics 143: 549-555.
24. LI, W.-H., 1976 Electrophoretic identity of proteins in a finite population and genetic distance between taxa. Genet. Res. Camb. 28: 119-127.
25. LIN, Z., X. GUI and H. LI, 1996 Multiplex genotype determination at a large number of gene loci. Proc. Natl. Acad. Sci. USA 93: 2582-2587.
26. LUNDSTROM, R., S. TAVARE and R. H. WARD, 1992 Modelling evolution of the human mitochondrial genome. Math. Biosci. 112: 319-335.
27. MARJORAM, P., and P. DONNELLY, 1994 Pairwise comparisons of mitochondrial DNA sequences in subdivided populations and implications for early human populations. Genetics 136: 673-683.
28. MORAN, P. A. P., 1975 Wandering distributions and the electrophoretic profile. Theor. Pop. Biol. 8: 318-330.
29. NEI, M., F. TAJIMA and Y. TATENO, 1983 Accuracy of estimated phylogenetic trees from molecular data. II. Gene frequency data. J. Mol. Evol. 19: 153-170.
30. NATIONAL RESEARCH COUNCIL, 1996 The Evaluation of Forensic DNA Evidence by National Research Council, National Academy Press, Washington DC.
31. OHTA, T., and M. KIMURA, 1973 A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population. Genet. Res. 22: 201-204.
32. PENA, S. D. J., and R. CHAKRABORTY, 1994 Paternity testing in the DNA era. Trends Genet. 10: 204-209.
33. ROGERS, A. R., 1995 Genetic evidence for a Pleistocene population explosion. Evolution 49: 608-615.
34. ROGERS, A. R., and H. C. HARPENDING, 1992 Population growth makes waves in the distribution of pairwise genetic differences. Mol. Biol. Evol. 9: 552-569.
35. RUBINSZTEIN, D. C., W. AMOS, J. LEGGO, S. GOODBURN, S. JAIN et al., 1995 Microsatellite evolution-evidence for directionality and variation in rate between species. Nature Genet. 10: 337-343.
36. SHRIVER, M. D., L. JIN, R. CHAKRABORTY and E. BOERWINKLE, 1993 VNTR allele frequency distributions under the stepwise mutation model - a computer simulation approach. Genetics 134: 983-993.
37. SLATKIN, M., 1995 A measure of population subdivision based on microsatellite allele frequencies. Genetics 139: 457-462.
38. STRINGER, C. B., 1989 Neanderthals, their contemporaries and modern human origin, pp. 351-355 in Hominidae, edited by G. GIACOBINI. Jaca Book, Milan.
39. TAUTZ, D., 1993 Notes on the definition and nomenclature of tandemly repetitive DNA sequence, pp. 21-28 in DNA Fingerprinting: State of the Science, edited by S. D. J. PENA, R. CHAKRABORTY, J. T. EPPLEN and A. J. JEFFREYS. Birkhauser, Basel.
40. VALES, A. M., M. SLATKIN and N. B. FREIMER, 1993 Allele frequencies at microsatellite loci: the stepwise mutation model revisited. Genetics 133: 737-749.
41. WEBER, J. L., 1990 Informativeness of human (dC-dA)" · (dG-dT)" polymorphisms. Genomics 7: 524-530.
42. WEBER, J. L., and C. WONG, 1993 Mutation of human short tandem repeats. Hum. Mol. Genet. 2: 1123-1128.
43. WEHRHAHN, C. F., 1975 The evolution of selectively similar electrophoretically detectable alleles in finite natural populations. Genetics 80: 375-394.
44. WEIDENREICH, F., 1939 Six lectures on Sinanthropus pekinensis and related problems. Bull. Geol. Soc. China 19: 1-110.
45. WEISSENBACH, J., G. GYAPAY, C. DIB, A. VIGNAL, P. MORRISSETTE et al., 1992 A second-generation linkage map of the human genome. Nature 359: 794-801.