-
1
-
-
0030830925
-
Crystal structure of cytochrome c′ from Rhodocyclus gelatinosus and comparison with other cytochromes c′
-
Archer, M., Banci, L., Dikaya, E., and Romão, M.J. 1997. Crystal structure of cytochrome c′ from Rhodocyclus gelatinosus and comparison with other cytochromes c′. J. Biol. Inorganic Chem. 2: 611-622.
-
(1997)
J. Biol. Inorganic Chem.
, vol.2
, pp. 611-622
-
-
Archer, M.1
Banci, L.2
Dikaya, E.3
Romão, M.J.4
-
2
-
-
0033954256
-
The protein data bank
-
Berman, H.M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T.N., Weissig, H., Shindyalov, I.N., and Bourne, P.E. 2000. The protein data bank. Nucleic Acids Res. 28: 235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
3
-
-
0030961726
-
Entropy in protein folding and in protein-protein interactions
-
Brady, G.P. and Sharp, K.A. 1997. Entropy in protein folding and in protein-protein interactions. Curr. Opin. Struct. Biol. 7: 215-221.
-
(1997)
Curr. Opin. Struct. Biol.
, vol.7
, pp. 215-221
-
-
Brady, G.P.1
Sharp, K.A.2
-
4
-
-
0034663581
-
Side-chain conformational entropy in protein unfolded states
-
Creamer, T.P. 2000. Side-chain conformational entropy in protein unfolded states. Proteins Struct. Funct. Genet. 40: 443-450.
-
(2000)
Proteins Struct. Funct. Genet.
, vol.40
, pp. 443-450
-
-
Creamer, T.P.1
-
5
-
-
0034681465
-
Convergent solutions to binding at a protein-protein interface
-
DeLano, W.L., Ultsch, M.H., de Vos, A.M., and Wells, J.A. 2000. Convergent solutions to binding at a protein-protein interface. Science 287: 1279-1283.
-
(2000)
Science
, vol.287
, pp. 1279-1283
-
-
DeLano, W.L.1
Ultsch, M.H.2
De Vos, A.M.3
Wells, J.A.4
-
6
-
-
0030046275
-
Three-dimensional structure of cytochrome c′ from two Alcaligenes species and the implications for four-helix bundle structures
-
Dobbs, A.J., Anderson, B.F., Faber, H.R., and Baker, E.N. 1996. Three-dimensional structure of cytochrome c′ from two Alcaligenes species and the implications for four-helix bundle structures. Acta Crystallogr. D D52: 356-368.
-
(1996)
Acta Crystallogr. D
, vol.D52
, pp. 356-368
-
-
Dobbs, A.J.1
Anderson, B.F.2
Faber, H.R.3
Baker, E.N.4
-
7
-
-
0028871798
-
Side-chain conformational entropy in protein-folding
-
Doig, A.J. and Sternberg, M.J.E. 1995. Side-chain conformational entropy in protein-folding. Protein Sci. 4: 2247-2251.
-
(1995)
Protein Sci.
, vol.4
, pp. 2247-2251
-
-
Doig, A.J.1
Sternberg, M.J.E.2
-
8
-
-
0035853028
-
Identification of protein oligomerization states by analysis of interface conservation
-
Elcock, A.H. and McCammon, J.A. 2001. Identification of protein oligomerization states by analysis of interface conservation. Proc. Natl. Acad. Sci. 98: 2990-2994.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 2990-2994
-
-
Elcock, A.H.1
McCammon, J.A.2
-
9
-
-
0022419653
-
Structure of ferricytochrome c′ from Rhodospirillum molischianum at 1.67Å resolution
-
Finzel, B.C., Weber, P.C., Hardman, K.D., and Salemme, F.R. 1985. Structure of ferricytochrome c′ from Rhodospirillum molischianum at 1.67Å resolution. J. Mol. Biol. 186: 627-643.
-
(1985)
J. Mol. Biol.
, vol.186
, pp. 627-643
-
-
Finzel, B.C.1
Weber, P.C.2
Hardman, K.D.3
Salemme, F.R.4
-
10
-
-
0035342450
-
Residue frequencies and pairing preferences at protein-protein interfaces
-
Glaser, F., Steinberg, D.M., Vakser, I.A., and Ben-Tal, N. 2001. Residue frequencies and pairing preferences at protein-protein interfaces. Proteins Struct. Funct. Genet. 43: 89-102.
-
(2001)
Proteins Struct. Funct. Genet.
, vol.43
, pp. 89-102
-
-
Glaser, F.1
Steinberg, D.M.2
Vakser, I.A.3
Ben-Tal, N.4
-
12
-
-
0027087369
-
Calculation of the free energy of association for protein complexes
-
Horton, N. and Lewis, M. 1992. Calculation of the free energy of association for protein complexes. Protein Sci. 1: 169-181.
-
(1992)
Protein Sci.
, vol.1
, pp. 169-181
-
-
Horton, N.1
Lewis, M.2
-
13
-
-
0034213559
-
Conservation of polar residues as hot spots at protein interfaces
-
Hu, Z., Ma, B., Wolfson, H., and Nussinov, R. 2000. Conservation of polar residues as hot spots at protein interfaces. Proteins Struct. Funct. Genet. 39: 331-342.
-
(2000)
Proteins Struct. Funct. Genet.
, vol.39
, pp. 331-342
-
-
Hu, Z.1
Ma, B.2
Wolfson, H.3
Nussinov, R.4
-
14
-
-
0010656061
-
Exploring the protein interactome using comprehensive two-hybrid projects
-
Ito, T., Chiba, T., and Yoshida, M. 2001. Exploring the protein interactome using comprehensive two-hybrid projects. Trends Biotechnol. 19: S23-S27.
-
(2001)
Trends Biotechnol.
, vol.19
-
-
Ito, T.1
Chiba, T.2
Yoshida, M.3
-
15
-
-
0030028728
-
Principles of protein-protein interactions
-
Jones, S. and Thornton, J.M. 1996. Principles of protein-protein interactions. Proc. Natl. Acad. Sci. 93: 13-20.
-
(1996)
Proc. Natl. Acad. Sci.
, vol.93
, pp. 13-20
-
-
Jones, S.1
Thornton, J.M.2
-
16
-
-
0031565729
-
Analysis of protein-protein interaction sites using surface patches
-
-. 1997a. Analysis of protein-protein interaction sites using surface patches. J. Mol. Biol. 272: 121-132.
-
(1997)
J. Mol. Biol.
, vol.272
, pp. 121-132
-
-
-
17
-
-
0031565725
-
Prediction of protein-protein interaction sites using patch analysis
-
-. 1997b. Prediction of protein-protein interaction sites using patch analysis. J. Mol. Biol. 272: 133-143.
-
(1997)
J. Mol. Biol.
, vol.272
, pp. 133-143
-
-
-
18
-
-
0035141353
-
Dynamical view of the positions of key side chains in protein-protein recognition
-
Kimura, S.R., Brower, R.C., Vajda, S., and Camacho, C.J. 2001. Dynamical view of the positions of key side chains in protein-protein recognition. Biophys. J. 80: 635-642.
-
(2001)
Biophys. J.
, vol.80
, pp. 635-642
-
-
Kimura, S.R.1
Brower, R.C.2
Vajda, S.3
Camacho, C.J.4
-
19
-
-
0028343413
-
Application of a self-consistent mean field theory to predict protein side-chains conformation and estimate their conformational entropy
-
Koehl, P. and Delarue, M. 1994. Application of a self-consistent mean field theory to predict protein side-chains conformation and estimate their conformational entropy. J. Mol. Biol. 239: 249-275.
-
(1994)
J. Mol. Biol.
, vol.239
, pp. 249-275
-
-
Koehl, P.1
Delarue, M.2
-
20
-
-
0034283147
-
Specificity in protein-protein interactions: The structural basis for dual recognition in endonuclease colicin-immunity protein complexes
-
Kühlmann, U.C., Pommer, A.J., Moore, G.R., James, R., and Kleanthous, C. 2000. Specificity in protein-protein interactions: The structural basis for dual recognition in endonuclease colicin-immunity protein complexes. J. Mol. Biol. 301: 1163-1178.
-
(2000)
J. Mol. Biol.
, vol.301
, pp. 1163-1178
-
-
Kühlmann, U.C.1
Pommer, A.J.2
Moore, G.R.3
James, R.4
Kleanthous, C.5
-
21
-
-
0034329425
-
Unprecedented proximal binding of nitric oxide to heme: Implications for guanylate cyclase
-
Lawson, D.M., Stevenson, C.E.M., Andrew, C.R., and Eady, R.R. 2000. Unprecedented proximal binding of nitric oxide to heme: Implications for guanylate cyclase. EMBO J. 19: 5661-5671.
-
(2000)
EMBO J.
, vol.19
, pp. 5661-5671
-
-
Lawson, D.M.1
Stevenson, C.E.M.2
Andrew, C.R.3
Eady, R.R.4
-
22
-
-
0027991081
-
Estimation of changes in side-chain configurational entropy in binding and folding - General methods and application to helix formation
-
Lee, K.H., Xie, D., Freire, E., and Amzel, L.M. 1994. Estimation of changes in side-chain configurational entropy in binding and folding - General methods and application to helix formation. Proteins Struct. Funct. Genet. 20: 68-84.
-
(1994)
Proteins Struct. Funct. Genet.
, vol.20
, pp. 68-84
-
-
Lee, K.H.1
Xie, D.2
Freire, E.3
Amzel, L.M.4
-
23
-
-
0031555477
-
Identification of functional surface of the zinc binding domains of intracellular receptors
-
Lichtarge, O., Yamamoto, K.R., and Cohen, F.E. 1997. Identification of functional surface of the zinc binding domains of intracellular receptors. J. Mol. Biol. 274: 325-337.
-
(1997)
J. Mol. Biol.
, vol.274
, pp. 325-337
-
-
Lichtarge, O.1
Yamamoto, K.R.2
Cohen, F.E.3
-
24
-
-
0003187567
-
The atomic structure of protein-protein recognition sites
-
Lo Conte, L., Chothia, C., and Janin, J. 1999. The atomic structure of protein-protein recognition sites. J. Mol. Biol. 285: 2177-2198.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 2177-2198
-
-
Lo Conte, L.1
Chothia, C.2
Janin, J.3
-
25
-
-
0037076289
-
Noninvasive imaging of protein-protein interactions in living animals
-
Luker, G.D., Sharma, V., Pica, C.M., Dahlheimer, J.L., Li, W., Ochesky, J., Ryan, C.E., Piwnica-Worms, H., and Piwnica-Worms, D. 2002. Noninvasive imaging of protein-protein interactions in living animals. Proc. Natl. Acad. Sci. 99: 6961-6966.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 6961-6966
-
-
Luker, G.D.1
Sharma, V.2
Pica, C.M.3
Dahlheimer, J.L.4
Li, W.5
Ochesky, J.6
Ryan, C.E.7
Piwnica-Worms, H.8
Piwnica-Worms, D.9
-
26
-
-
0034308172
-
Discriminating between homodimeric and monomeric proteins in the crystalline state
-
Ponstingl, H., Henrick, K., and Thornton, J. M. 2000. Discriminating between homodimeric and monomeric proteins in the crystalline state. Proteins Struct. Funct. Genet. 41: 47-57.
-
(2000)
Proteins Struct. Funct. Genet.
, vol.41
, pp. 47-57
-
-
Ponstingl, H.1
Henrick, K.2
Thornton, J.M.3
-
27
-
-
0035933058
-
Quantification of the hydrophobic interaction by simulations of the aggregation of small hydrophobic solutes in water
-
Raschke, T.M., Tsai, J., and Levitt, M. 2001. Quantification of the hydrophobic interaction by simulations of the aggregation of small hydrophobic solutes in water. Proc. Natl. Acad. Sci. 98: 5965-5969.
-
(2001)
Proc. Natl. Acad. Sci.
, vol.98
, pp. 5965-5969
-
-
Raschke, T.M.1
Tsai, J.2
Levitt, M.3
-
28
-
-
0037022597
-
Noninvasive quantitative imaging of protein-protein interactions in living subjects
-
Ray, P., Pimenta, H., Paulmurugan, R., Berger, F., Phelps, M.E., Iyer, M., and Gambhir, S.S. 2002. Noninvasive quantitative imaging of protein-protein interactions in living subjects. Proc. Natl. Acad. Sci. 99: 3105-3110.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 3105-3110
-
-
Ray, P.1
Pimenta, H.2
Paulmurugan, R.3
Berger, F.4
Phelps, M.E.5
Iyer, M.6
Gambhir, S.S.7
-
29
-
-
0027380310
-
Atomic structure of a cytochrome c′ with an unusual ligand-controlled dimer dissociation at 1.8Å resolution
-
Ren, Z., Meyer, T., and McRee, D.E. 1993. Atomic structure of a cytochrome c′ with an unusual ligand-controlled dimer dissociation at 1.8Å resolution. J. Mol. Biol. 234: 433-445.
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 433-445
-
-
Ren, Z.1
Meyer, T.2
McRee, D.E.3
-
30
-
-
0034193510
-
Protein docking using spherical polar Fourier correlations
-
Ritchie, D.W. and Kemp, G.J.L. 2000. Protein docking using spherical polar Fourier correlations. Proteins Struct. Funct. Genet. 39: 178-194.
-
(2000)
Proteins Struct. Funct. Genet.
, vol.39
, pp. 178-194
-
-
Ritchie, D.W.1
Kemp, G.J.L.2
-
31
-
-
0028009317
-
High-resolution crystallographic analysis of a co-operative dimer hemoglobin
-
Royer, W.E. 1994. High-resolution crystallographic analysis of a co-operative dimer hemoglobin. J. Mol. Biol. 235:657-681.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 657-681
-
-
Royer, W.E.1
-
32
-
-
0031715982
-
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
-
Shindyalov, I.N. and Bourne, P.E. 1998. Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Protein Eng. 11: 739-747.
-
(1998)
Protein Eng.
, vol.11
, pp. 739-747
-
-
Shindyalov, I.N.1
Bourne, P.E.2
-
33
-
-
0036468385
-
Prediction of protein-protein interactions by docking methods
-
Smith, G.R. and Sternberg, M.J.E. 2002. Prediction of protein-protein interactions by docking methods. Curr. Opin. Struct. Biol. 12: 28-35.
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 28-35
-
-
Smith, G.R.1
Sternberg, M.J.E.2
-
34
-
-
0142140800
-
Prediction of protein side chain conformations: A study on the influence of backbone accuracy on conformation stability in the rotamer space
-
Tuffery, P., Etchebest, C., and Hazout, S. 1997. Prediction of protein side chain conformations: A study on the influence of backbone accuracy on conformation stability in the rotamer space. Protein Eng. 10: 361-372.
-
(1997)
Protein Eng.
, vol.10
, pp. 361-372
-
-
Tuffery, P.1
Etchebest, C.2
Hazout, S.3
-
35
-
-
0035914476
-
Conservation helps to identify biologically relevant crystal contacts
-
Valdar, W.S.J. and Thornton, J.M. 2001a. Conservation helps to identify biologically relevant crystal contacts. J. Mol. Biol. 313: 399-416.
-
(2001)
J. Mol. Biol.
, vol.313
, pp. 399-416
-
-
Valdar, W.S.J.1
Thornton, J.M.2
-
36
-
-
0035178383
-
Protein-protein interfaces: Analysis of amino acid conservation in homodimers
-
-. 2001b. Protein-protein interfaces: Analysis of amino acid conservation in homodimers. Proteins Struct. Funct. Genet. 42: 108-124.
-
(2001)
Proteins Struct. Funct. Genet.
, vol.42
, pp. 108-124
-
-
-
37
-
-
0028866770
-
Protein-protein interactions in colicin E9 DNase-immunity protein complexes. Diffusion-controlled association and femtomolar binding for the cognate complex
-
Wallis, R., Moore, G.R., James, R., and Kleanthous, C. 1995. Protein-protein interactions in colicin E9 DNase-immunity protein complexes. Diffusion-controlled association and femtomolar binding for the cognate complex. Biochemistry 34: 13743-13750.
-
(1995)
Biochemistry
, vol.34
, pp. 13743-13750
-
-
Wallis, R.1
Moore, G.R.2
James, R.3
Kleanthous, C.4
|