-
1
-
-
0034708480
-
The genome sequence of Drosophila melanogaster
-
Adams, M.D., Celniker, S.E., Holt, R.A., Evans, C.A., Gocayne, J.D., Amanatides, P.G., Scherer, S.E., Li, P.W., Hoskins, R.A., Galle, R.F., et al. 2000. The genome sequence of Drosophila melanogaster. Science 287: 2185-2195.
-
(2000)
Science
, vol.287
, pp. 2185-2195
-
-
Adams, M.D.1
Celniker, S.E.2
Holt, R.A.3
Evans, C.A.4
Gocayne, J.D.5
Amanatides, P.G.6
Scherer, S.E.7
Li, P.W.8
Hoskins, R.A.9
Galle, R.F.10
-
2
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner, F.R., Plunkett III, G., Bloch, C.A., Perna, N.T., Burland, V., Riley, M., Collado-Vides, J., Glasner, J.D., Rode, C.K., Mayhew, G.F., et al. 1997. The complete genome sequence of Escherichia coli K-12. Science 277: 1453-1474.
-
(1997)
Science
, vol.277
, pp. 1453-1474
-
-
Blattner, F.R.1
Plunkett G. III2
Bloch, C.A.3
Perna, N.T.4
Burland, V.5
Riley, M.6
Collado-Vides, J.7
Glasner, J.D.8
Rode, C.K.9
Mayhew, G.F.10
-
3
-
-
16044367245
-
Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii
-
Bult, C.J., White, O., Olsen, G.J., Zhou, L., Fleischmann, R.D., Sutton, G.G., Blake, J.A., FitzGerald, L.M., Clayton, R.A., Gocayne, J.D., et al. 1996. Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii. Science 273: 1058-1073.
-
(1996)
Science
, vol.273
, pp. 1058-1073
-
-
Bult, C.J.1
White, O.2
Olsen, G.J.3
Zhou, L.4
Fleischmann, R.D.5
Sutton, G.G.6
Blake, J.A.7
FitzGerald, L.M.8
Clayton, R.A.9
Gocayne, J.D.10
-
4
-
-
0028568176
-
TopPred II: An improved software for membrane protein structure predictions
-
Claros, M.G. and von Heijne, G. 1994. TopPred II: An improved software for membrane protein structure predictions. Comput. Appl. Biosci. 10: 685-686.
-
(1994)
Comput. Appl. Biosci.
, vol.10
, pp. 685-686
-
-
Claros, M.G.1
Von Heijne, G.2
-
5
-
-
0032508046
-
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
-
Cole, S.T., Brosch, R., Parkhill, J., Garnier, T., Churcher, C., Harris, D., Gordon, S.V., Eiglmeier, K., Gas, S., Barry III, C.E., et al. 1998. Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence. Nature 393: 537-544.
-
(1998)
Nature
, vol.393
, pp. 537-544
-
-
Cole, S.T.1
Brosch, R.2
Parkhill, J.3
Garnier, T.4
Churcher, C.5
Harris, D.6
Gordon, S.V.7
Eiglmeier, K.8
Gas, S.9
Barry C.E. III10
-
6
-
-
0032420333
-
JPred: A consensus secondary structure prediction server
-
Cuff, J.A., Clamp, M.E., Siddiqui, A.S., Finlay, M., and Barton, G.J. 1998. JPred: A consensus secondary structure prediction server. Bioinformatics 14: 892-893.
-
(1998)
Bioinformatics
, vol.14
, pp. 892-893
-
-
Cuff, J.A.1
Clamp, M.E.2
Siddiqui, A.S.3
Finlay, M.4
Barton, G.J.5
-
7
-
-
0037022611
-
Rapid topology mapping of Escherichia coli inner-membrane proteins by prediction and PhoA/GFP fusion analysis
-
Drew, D., Sjöstrand, D., Nilsson, J., Urbig, T., Chin, C., de Gier, J.W., and von Heijne, G. 2002. Rapid topology mapping of Escherichia coli inner-membrane proteins by prediction and PhoA/GFP fusion analysis. Proc. Natl. Acad. Sci. 99: 2690-2695.
-
(2002)
Proc. Natl. Acad. Sci.
, vol.99
, pp. 2690-2695
-
-
Drew, D.1
Sjöstrand, D.2
Nilsson, J.3
Urbig, T.4
Chin, C.5
De Gier, J.W.6
Von Heijne, G.7
-
8
-
-
0031470826
-
Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi
-
Fraser, C.M., Casjens, S., Huang, W.M., Sutton, G.G., Clayton, R., Lathigra, R., White, O., Ketchum, K.A., Dodson, R., Hickey, E.K., et al. 1997. Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi. Nature 390: 580-586.
-
(1997)
Nature
, vol.390
, pp. 580-586
-
-
Fraser, C.M.1
Casjens, S.2
Huang, W.M.3
Sutton, G.G.4
Clayton, R.5
Lathigra, R.6
White, O.7
Ketchum, K.A.8
Dodson, R.9
Hickey, E.K.10
-
9
-
-
0027092678
-
Selection of representative protein data sets
-
Hobohm, U., Scharf, M., Schneider, R., and Sander, C. 1992. Selection of representative protein data sets. Protein Sci. 1: 409-417.
-
(1992)
Protein Sci.
, vol.1
, pp. 409-417
-
-
Hobohm, U.1
Scharf, M.2
Schneider, R.3
Sander, C.4
-
10
-
-
0002494802
-
Transmembrane topology prediction methods: A re-assessment and improvement by a consensus method using a dataset of experimentally-characterised transmembrane topology
-
Ikeda, M., Arai, M., Lao, D., and Shimizu, T. 2001. Transmembrane topology prediction methods: A re-assessment and improvement by a consensus method using a dataset of experimentally-characterised transmembrane topology. In Silico Biol. 2: 1-15.
-
(2001)
In Silico Biol.
, vol.2
, pp. 1-15
-
-
Ikeda, M.1
Arai, M.2
Lao, D.3
Shimizu, T.4
-
11
-
-
0035109170
-
MPtopo: A database of membrane protein topology
-
Jayasinghe, S., Hristova, K., and White, S.H. 2001. MPtopo: A database of membrane protein topology. Protein Sci. 10: 455-458.
-
(2001)
Protein Sci.
, vol.10
, pp. 455-458
-
-
Jayasinghe, S.1
Hristova, K.2
White, S.H.3
-
12
-
-
0032570779
-
Do transmembrane protein superfolds exist?
-
Jones, D.T. 1998. Do transmembrane protein superfolds exist? FEBS Lett. 423: 281-285.
-
(1998)
FEBS Lett.
, vol.423
, pp. 281-285
-
-
Jones, D.T.1
-
13
-
-
0028211273
-
A model recognition approach to the prediction of all-helical membrane protein structure and topology
-
Jones, D.T., Taylor, W.R., and Thornton, J.M. 1994. A model recognition approach to the prediction of all-helical membrane protein structure and topology. Biochemistry 33: 3038-3049.
-
(1994)
Biochemistry
, vol.33
, pp. 3038-3049
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
14
-
-
0035980822
-
Complete genomic sequence of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120
-
Kaneko, T., Nakamura, Y., Wolk, C.P., Kuritz, T., Sasamoto, S., Watanabe, A., Iriguchi, M., Ishikawa, A., Kawashima, K., Kimura, T., et al. 2001. Complete genomic sequence of the filamentous nitrogen-fixing cyanobacterium Anabaena sp. strain PCC 7120. DNA Res. 8: 227-253.
-
(2001)
DNA Res.
, vol.8
, pp. 227-253
-
-
Kaneko, T.1
Nakamura, Y.2
Wolk, C.P.3
Kuritz, T.4
Sasamoto, S.5
Watanabe, A.6
Iriguchi, M.7
Ishikawa, A.8
Kawashima, K.9
Kimura, T.10
-
15
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
-
Krogh, A., Larsson, B., von Heijne, G., and Sonnhammer, E.L. 2001. Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes. J. Mol. Biol. 305: 567-580.
-
(2001)
J. Mol. Biol.
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
Von Heijne, G.3
Sonnhammer, E.L.4
-
16
-
-
0030731108
-
The complete genome sequence of the gram-positive bacterium Bacillus subtilis
-
Kunst, F., Ogasawara, N., Moszer, I., Albertini, A.M., Alloni, G., Azevedo, V., Bertero, M.G., Bessieres, P., Bolotin, A., Borchert, S., et al. 1997. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Nature 390: 249-256.
-
(1997)
Nature
, vol.390
, pp. 249-256
-
-
Kunst, F.1
Ogasawara, N.2
Moszer, I.3
Albertini, A.M.4
Alloni, G.5
Azevedo, V.6
Bertero, M.G.7
Bessieres, P.8
Bolotin, A.9
Borchert, S.10
-
17
-
-
0034780030
-
Pcons: A neural-network-based consensus predictor that improves fold recognition
-
Lundström, J., Rychlewski, L., Bujnicki, J., and Elofsson, A. 2001. Pcons: A neural-network-based consensus predictor that improves fold recognition. Protein Sci. 10: 2354-2362.
-
(2001)
Protein Sci.
, vol.10
, pp. 2354-2362
-
-
Lundström, J.1
Rychlewski, L.2
Bujnicki, J.3
Elofsson, A.4
-
18
-
-
0034495418
-
A collection of well characterised integral membrane proteins
-
Möller, S., Kriventseva, E.V., and Apweiler, R. 2000. A collection of well characterised integral membrane proteins. Bioinformatics 16: 1159-1160.
-
(2000)
Bioinformatics
, vol.16
, pp. 1159-1160
-
-
Möller, S.1
Kriventseva, E.V.2
Apweiler, R.3
-
19
-
-
0034899781
-
Evaluation of methods for the prediction of membrane spanning regions
-
Möller, S., Croning, M., and Apweiler, R. 2001a. Evaluation of methods for the prediction of membrane spanning regions. Bioinformatics 17: 646-653.
-
(2001)
Bioinformatics
, vol.17
, pp. 646-653
-
-
Möller, S.1
Croning, M.2
Apweiler, R.3
-
20
-
-
0034740232
-
Consistent integration of non-reliable heterogeneous information resources applied to the annotation of transmembrane proteins
-
Möller, S., Schroeder, M., and Apweiler, R. 2001b. Consistent integration of non-reliable heterogeneous information resources applied to the annotation of transmembrane proteins. Comput. Chem. 26: 41-49
-
(2001)
Comput. Chem.
, vol.26
, pp. 41-49
-
-
Möller, S.1
Schroeder, M.2
Apweiler, R.3
-
21
-
-
0034672544
-
Consensus predictions of membrane protein topology
-
Nilsson, J., Persson, B., and von Heijne, G. 2000. Consensus predictions of membrane protein topology. FEBS Lett. 486: 267-269.
-
(2000)
FEBS Lett.
, vol.486
, pp. 267-269
-
-
Nilsson, J.1
Persson, B.2
Von Heijne, G.3
-
22
-
-
0033302227
-
CoPreTHi: A Web tool which combines transmembrane protein segment prediction methods
-
Promponas, V.J., Palaios, G.A., Pasquier, C.M., Hamodrakas, J.S., and Hamodrakas, S.J. 1999. CoPreTHi: A Web tool which combines transmembrane protein segment prediction methods. In Silico Biol. 1: 159-162.
-
(1999)
In Silico Biol
, vol.1
, pp. 159-162
-
-
Promponas, V.J.1
Palaios, G.A.2
Pasquier, C.M.3
Hamodrakas, J.S.4
Hamodrakas, S.J.5
-
23
-
-
0030038634
-
Topology prediction for helical transmembrane proteins at 86% accuracy
-
Rost, B., Fariselli, P., and Casadio, R. 1996. Topology prediction for helical transmembrane proteins at 86% accuracy. Protein Sci. 5: 1704-1718.
-
(1996)
Protein Sci.
, vol.5
, pp. 1704-1718
-
-
Rost, B.1
Fariselli, P.2
Casadio, R.3
-
24
-
-
0031614678
-
A hidden Markov model for predicting transmembrane helices in protein sequences
-
Sonnhammer, E., von Heijne, G., and Krogh, A. 1998. A hidden Markov model for predicting transmembrane helices in protein sequences. Proc. Int. Conf. Intell. Syst. Mol. Biol. 6: 175-182.
-
(1998)
Proc. Int. Conf. Intell. Syst. Mol. Biol.
, vol.6
, pp. 175-182
-
-
Sonnhammer, E.1
Von Heijne, G.2
Krogh, A.3
-
25
-
-
0035165576
-
Worm-Base: Network access to the genome and biology of Caenorhabditis elegans
-
Stein, L., Sternberg, P., Durbin, R., Thierry-Mieg, J., and Spieth J. 2001. Worm-Base: Network access to the genome and biology of Caenorhabditis elegans. Nucleic Acids Res. 29: 82-86.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 82-86
-
-
Stein, L.1
Sternberg, P.2
Durbin, R.3
Thierry-Mieg, J.4
Spieth, J.5
-
26
-
-
0035919670
-
Complete genome sequence of a virulent isolate of Streptococcus pneumoniae
-
Tettelin, H., Nelson, K.E., Paulsen, I.T., Eisen, J.A., Read, T.D., Peterson, S., Heidelberg, J., DeBoy, R.T., Haft, D.H., Dodson, R.J., et al. 2001. Complete genome sequence of a virulent isolate of Streptococcus pneumoniae. Science 293: 498-506.
-
(2001)
Science
, vol.293
, pp. 498-506
-
-
Tettelin, H.1
Nelson, K.E.2
Paulsen, I.T.3
Eisen, J.A.4
Read, T.D.5
Peterson, S.6
Heidelberg, J.7
DeBoy, R.T.8
Haft, D.H.9
Dodson, R.J.10
-
27
-
-
0034649673
-
Sequence and analysis of chromosome I of the plant Arabidopsis thaliana
-
Theologis, A., Ecker, J.R., Palm, C.J., Federspiel, N.A., Kaul, S., White, O., Alonso, J., Altafi, H., Araujo, R., Bowman, C.L., et al. 2000. Sequence and analysis of chromosome I of the plant Arabidopsis thaliana. Nature 408: 816-829.
-
(2000)
Nature
, vol.408
, pp. 816-829
-
-
Theologis, A.1
Ecker, J.R.2
Palm, C.J.3
Federspiel, N.A.4
Kaul, S.5
White, O.6
Alonso, J.7
Altafi, H.8
Araujo, R.9
Bowman, C.L.10
-
28
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J.D., Higgins, D.G., and Gibson, T.J. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
29
-
-
0030835739
-
The complete genome sequence of the gastric pathogen Helicobacter pylori
-
Tomb, J.F., White, O., Kerlavage, A.R., Clayton, R.A., Sutton, G.G., Fleischmann, R.D., Ketchum, K.A., Klenk, H.P., Gill, S., Dougherty, B.A., et al. 1997. The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature 388: 539-547.
-
(1997)
Nature
, vol.388
, pp. 539-547
-
-
Tomb, J.F.1
White, O.2
Kerlavage, A.R.3
Clayton, R.A.4
Sutton, G.G.5
Fleischmann, R.D.6
Ketchum, K.A.7
Klenk, H.P.8
Gill, S.9
Dougherty, B.A.10
-
30
-
-
0032561132
-
Principles governing amino acid composition of integral membrane proteins: Application to topology prediction
-
Tusnady, G.E. and Simon, I. 1998. Principles governing amino acid composition of integral membrane proteins: Application to topology prediction. J. Mol. Biol. 283: 489-506.
-
(1998)
J. Mol. Biol.
, vol.283
, pp. 489-506
-
-
Tusnady, G.E.1
Simon, I.2
-
31
-
-
0034786532
-
The HMMTOP transmembrane topology prediction server
-
-. 2001. The HMMTOP transmembrane topology prediction server. Bioinformatics 17: 849-850.
-
(2001)
Bioinformatics
, vol.17
, pp. 849-850
-
-
-
32
-
-
0026716643
-
Membrane protein structure prediction. Hydrophobicity analysis and the positive-inside rule
-
von Heijne, G. 1992. Membrane protein structure prediction. Hydrophobicity analysis and the positive-inside rule. J. Mol. Biol. 225: 487-494.
-
(1992)
J. Mol. Biol.
, vol.225
, pp. 487-494
-
-
Von Heijne, G.1
-
33
-
-
0030431744
-
Principles of membrane protein assembly and structure
-
-. 1997. Principles of membrane protein assembly and structure. Progr. Biophys. Mol. Biol. 66: 113-139.
-
(1997)
Progr. Biophys. Mol. Biol.
, vol.66
, pp. 113-139
-
-
-
34
-
-
0033342531
-
Recent advances in the understanding of membrane protein assembly and structure
-
-. 1999. Recent advances in the understanding of membrane protein assembly and structure. Q. Rev. Biophys. 32: 285-307.
-
(1999)
Q. Rev. Biophys.
, vol.32
, pp. 285-307
-
-
|