-
1
-
-
0019450355
-
Structure of the hydrophobic protein crambin determined directly from the anomalous scattering of sulfur
-
Hendrickson W.A., Teeter M.M. Structure of the hydrophobic protein crambin determined directly from the anomalous scattering of sulfur. Nature. 290:1981;107-113.
-
(1981)
Nature
, vol.290
, pp. 107-113
-
-
Hendrickson, W.A.1
Teeter, M.M.2
-
2
-
-
0022325950
-
Resolution of phase ambiguity in macromolecular crystallography
-
Wang B.C. Resolution of phase ambiguity in macromolecular crystallography. Methods Enzymol. 115:1985;90-112.
-
(1985)
Methods Enzymol
, vol.115
, pp. 90-112
-
-
Wang, B.C.1
-
3
-
-
0001427026
-
Location of the sulfur atoms from the phased anomalous map using native protein data can be very helpful in tracing the peptide chain
-
Lehmann M.S., Pebay-Peyroula E. Location of the sulfur atoms from the phased anomalous map using native protein data can be very helpful in tracing the peptide chain. Acta Crystallogr B. 48:1992;115-116.
-
(1992)
Acta Crystallogr B
, vol.48
, pp. 115-116
-
-
Lehmann, M.S.1
Pebay-Peyroula, E.2
-
4
-
-
0032899751
-
Three-finger toxin fold for the extracellular ligand-binding domain of the type II activin receptor serine kinase
-
Greenwald J., Fischer W.H., Vale W.W., Choe S. Three-finger toxin fold for the extracellular ligand-binding domain of the type II activin receptor serine kinase. Nat Struct Biol. 6:1999;18-22.
-
(1999)
Nat Struct Biol
, vol.6
, pp. 18-22
-
-
Greenwald, J.1
Fischer, W.H.2
Vale, W.W.3
Choe, S.4
-
7
-
-
0030818593
-
PHASES-95: A program package for the processing and analysis of diffraction data from macromolecules
-
Furey W., Swaminathan S. PHASES-95: a program package for the processing and analysis of diffraction data from macromolecules. Methods Enzymol. 277:1997;590-620.
-
(1997)
Methods Enzymol
, vol.277
, pp. 590-620
-
-
Furey, W.1
Swaminathan, S.2
-
8
-
-
0035024041
-
Structure of the macrocycle thiostrepton solved using the anomalous dispersion contribution of sulfur
-
Bond C.S., Shaw M.P., Alphey M.S., Hunter W.N. Structure of the macrocycle thiostrepton solved using the anomalous dispersion contribution of sulfur. Acta Crystallogr D. 57:2001;755-758.
-
(2001)
Acta Crystallogr D
, vol.57
, pp. 755-758
-
-
Bond, C.S.1
Shaw, M.P.2
Alphey, M.S.3
Hunter, W.N.4
-
9
-
-
19944409045
-
The design and implementation of SnB v2.0
-
Weeks C.M., Miller M. The design and implementation of SnB v2.0. J Appl Crystallogr. 32:1999;120-124.
-
(1999)
J Appl Crystallogr
, vol.32
, pp. 120-124
-
-
Weeks, C.M.1
Miller, M.2
-
11
-
-
0032872798
-
Density modification for macromolecular phase improvement
-
Cowtan K.D., Zhang K.Y.J. Density modification for macromolecular phase improvement. Prog Biophys Mol Biol. 72:1999;245-270.
-
(1999)
Prog Biophys Mol Biol
, vol.72
, pp. 245-270
-
-
Cowtan, K.D.1
Zhang, K.Y.J.2
-
12
-
-
0034741557
-
The C1 subunit of α-crustacyanin: The de novo phasing of the crystal structure of a 40 kDa homodimeric protein using the anomalous scattering from S atoms combined with direct methods
-
The anomalous signal of sulfur in the long wavelength data, combined with data at atomic resolution, is used to solve the relatively large structure of this protein.
-
Gordon E.J., Leonard G.A., McSweeney S., Zagalsky P.F. The C1 subunit of α-crustacyanin: the de novo phasing of the crystal structure of a 40 kDa homodimeric protein using the anomalous scattering from S atoms combined with direct methods. Acta Crystallogr D. 57:2001;1230-1237. The anomalous signal of sulfur in the long wavelength data, combined with data at atomic resolution, is used to solve the relatively large structure of this protein.
-
(2001)
Acta Crystallogr D
, vol.57
, pp. 1230-1237
-
-
Gordon, E.J.1
Leonard, G.A.2
McSweeney, S.3
Zagalsky, P.F.4
-
13
-
-
0031058188
-
Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods
-
de La Fortelle E., Bricogne G. Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods. Methods Enzymol. 276:1997;472-494.
-
(1997)
Methods Enzymol
, vol.276
, pp. 472-494
-
-
De La Fortelle, E.1
Bricogne, G.2
-
14
-
-
0033831935
-
A flexible and efficient procedure for the solution and phase refinement of protein structures
-
Foadi J., Woolfson M.M., Dodson E.J., Wilson K.S., Jia-xing Y., Chao-de Z. A flexible and efficient procedure for the solution and phase refinement of protein structures. Acta Crystallogr D. 56:2000;1137-1147.
-
(2000)
Acta Crystallogr D
, vol.56
, pp. 1137-1147
-
-
Foadi, J.1
Woolfson, M.M.2
Dodson, E.J.3
Wilson, K.S.4
Jia-Xing, Y.5
Chao-De, Z.6
-
15
-
-
0033612225
-
Can anomalous signal of sulfur become a tool for solving protein crystal structures?
-
Dauter Z., Dauter M., de La Fortelle E., Bricogne G., Sheldrick G.M. Can anomalous signal of sulfur become a tool for solving protein crystal structures? J Mol Biol. 289:1999;83-92.
-
(1999)
J Mol Biol
, vol.289
, pp. 83-92
-
-
Dauter, Z.1
Dauter, M.2
De La Fortelle, E.3
Bricogne, G.4
Sheldrick, G.M.5
-
16
-
-
0036006266
-
Jolly SAD
-
The anomalous signal from different anomalous scatterers within SAD data at various resolutions is used for successful structure solution.
-
Dauter Z., Dauter M., Dodson E.J. Jolly SAD. Acta Crystallogr D. 58:2002;494-506. The anomalous signal from different anomalous scatterers within SAD data at various resolutions is used for successful structure solution.
-
(2002)
Acta Crystallogr D
, vol.58
, pp. 494-506
-
-
Dauter, Z.1
Dauter, M.2
Dodson, E.J.3
-
18
-
-
0030855279
-
Bias reduction in phase refinement by modified interference functions: Introducing the γ correction
-
Abrahams J.P. Bias reduction in phase refinement by modified interference functions: introducing the γ correction. Acta Crystallogr D. 53:1997;43-48.
-
(1997)
Acta Crystallogr D
, vol.53
, pp. 43-48
-
-
Abrahams, J.P.1
-
19
-
-
0035207901
-
Matrix methods for solving protein substructures of chlorine and sulfur from anomalous data
-
The matrix method of phase evaluation is highly successful in solving substructures of weak anomalous scatterers.
-
de Graaf R.A.G., Hilge M., van der Plas J.L., Abrahams J.P. Matrix methods for solving protein substructures of chlorine and sulfur from anomalous data. Acta Crystallogr D. 57:2001;1857-1862. The matrix method of phase evaluation is highly successful in solving substructures of weak anomalous scatterers.
-
(2001)
Acta Crystallogr D
, vol.57
, pp. 1857-1862
-
-
De Graaf, R.A.G.1
Hilge, M.2
Van der Plas, J.L.3
Abrahams, J.P.4
-
20
-
-
0032964481
-
Automated protein model building combined with iterative structure refinement
-
Perrakis A., Morris R.J., Lamzin V.S. Automated protein model building combined with iterative structure refinement. Nat Struct Biol. 6:1999;458-463.
-
(1999)
Nat Struct Biol
, vol.6
, pp. 458-463
-
-
Perrakis, A.1
Morris, R.J.2
Lamzin, V.S.3
-
21
-
-
0034945760
-
Anomalous signal of phosphorus used for phasing DNA oligomer: Importance of data redundancy
-
Phosphorus, a very weak anomalous scatterer present in all nucleotides, can be used for phasing DNA or RNA crystal structures. Phosphorus is a weaker anomalous scatterer than sulfur, but its content in nucleotides is higher than the amount of sulfur in proteins.
-
Dauter Z., Adamiak D.A. Anomalous signal of phosphorus used for phasing DNA oligomer: importance of data redundancy. Acta Crystallogr D. 57:2001;990-995. Phosphorus, a very weak anomalous scatterer present in all nucleotides, can be used for phasing DNA or RNA crystal structures. Phosphorus is a weaker anomalous scatterer than sulfur, but its content in nucleotides is higher than the amount of sulfur in proteins.
-
(2001)
Acta Crystallogr D
, vol.57
, pp. 990-995
-
-
Dauter, Z.1
Adamiak, D.A.2
-
22
-
-
0036006747
-
De novo phasing of two crystal forms of tryparedoxin II using the anomalous scattering from S atoms: A combination of small signal and medium resolution reveals this to be a general tool for solving protein crystal structures
-
Micossi E., Hunter W.N., Leonard G.A. De novo phasing of two crystal forms of tryparedoxin II using the anomalous scattering from S atoms: a combination of small signal and medium resolution reveals this to be a general tool for solving protein crystal structures. Acta Crystallogr D. 58:2002;21-28.
-
(2002)
Acta Crystallogr D
, vol.58
, pp. 21-28
-
-
Micossi, E.1
Hunter, W.N.2
Leonard, G.A.3
-
23
-
-
0000916175
-
Location of iron and sulfur atoms in myohemerythrin from anomalous-scattering measurements
-
Sheriff S., Hendrickson W.A. Location of iron and sulfur atoms in myohemerythrin from anomalous-scattering measurements. Acta Crystallogr B. 43:1987;209-212.
-
(1987)
Acta Crystallogr B
, vol.43
, pp. 209-212
-
-
Sheriff, S.1
Hendrickson, W.A.2
-
24
-
-
0035788254
-
Applications of anomalous scattering from S atoms for improved phasing of protein diffraction data collected at Cu Kα wavelength
-
The results clearly show the usefulness of the anomalous signal of sulfur in data collected at the wavelength of laboratory copper-anode X-ray sources.
-
Yang C., Pflugrath J.W. Applications of anomalous scattering from S atoms for improved phasing of protein diffraction data collected at Cu Kα wavelength. Acta Crystallogr D. 57:2001;1480-1490. The results clearly show the usefulness of the anomalous signal of sulfur in data collected at the wavelength of laboratory copper-anode X-ray sources.
-
(2001)
Acta Crystallogr D
, vol.57
, pp. 1480-1490
-
-
Yang, C.1
Pflugrath, J.W.2
-
25
-
-
0034511946
-
Use of Cr Kα radiation to enhance the signal from anomalous scatterers including sulfur
-
Kwiatkowski W., Noel J.P., Choe S. Use of Cr Kα radiation to enhance the signal from anomalous scatterers including sulfur. J Appl Crystallogr. 33:2000;876-881.
-
(2000)
J Appl Crystallogr
, vol.33
, pp. 876-881
-
-
Kwiatkowski, W.1
Noel, J.P.2
Choe, S.3
-
26
-
-
0034812116
-
Soft X-rays, high redundancy, and proper scaling: A new procedure for automated protein structure determination via SAS
-
Data accuracy, achieved by increased measurement multiplicity, is shown to be important for the successful use of a weak anomalous signal for phasing crystal structures.
-
Weiss M.S., Sicker T., Hilgenfeld R. Soft X-rays, high redundancy, and proper scaling: a new procedure for automated protein structure determination via SAS. Structure. 9:2001;771-777. Data accuracy, achieved by increased measurement multiplicity, is shown to be important for the successful use of a weak anomalous signal for phasing crystal structures.
-
(2001)
Structure
, vol.9
, pp. 771-777
-
-
Weiss, M.S.1
Sicker, T.2
Hilgenfeld, R.3
-
28
-
-
0034942263
-
De novo structure determination of vancomycin aglycon using the anomalous scattering of chlorine
-
Loll P. De novo structure determination of vancomycin aglycon using the anomalous scattering of chlorine. Acta Crystallogr D. 57:2001;977-980.
-
(2001)
Acta Crystallogr D
, vol.57
, pp. 977-980
-
-
Loll, P.1
-
29
-
-
85031349280
-
-
Lehmann C: Thesis, University of Göttingen, Göttingen, Germany, 2000
-
Lehmann C: Thesis, University of Göttingen, Göttingen, Germany, 2000.
-
-
-
-
30
-
-
0034142070
-
Novel approach to phasing proteins: Derivatization by short cryo-soaking with halides
-
Dauter Z., Dauter M., Rajashankar K.R. Novel approach to phasing proteins: derivatization by short cryo-soaking with halides. Acta Crystallogr D. 56:2000;232-237.
-
(2000)
Acta Crystallogr D
, vol.56
, pp. 232-237
-
-
Dauter, Z.1
Dauter, M.2
Rajashankar, K.R.3
-
31
-
-
0035094743
-
Entering a new phase: Using solvent halide ions in protein structure determination
-
Dauter Z., Dauter M. Entering a new phase: using solvent halide ions in protein structure determination. Structure. 9:2001;R21-R26.
-
(2001)
Structure
, vol.9
-
-
Dauter, Z.1
Dauter, M.2
-
32
-
-
0031058883
-
Phase determination form multiwavelength anomalous diffraction measurements
-
Hendrickson W.A., Ogata C.M. Phase determination form multiwavelength anomalous diffraction measurements. Methods Enzymol. 276:1997;494-523.
-
(1997)
Methods Enzymol
, vol.276
, pp. 494-523
-
-
Hendrickson, W.A.1
Ogata, C.M.2
-
33
-
-
0036615809
-
Triiodide derivatization and combinatorial counter-ion replacement: Two methods for enhancing phasing signal using laboratory Cu Kα X-ray equipment
-
Two ingenious methods of phasing the in-house diffraction data are proposed: one based on incorporating the polyiodide anions for SIRAS (single isomorphous replacement with anomalous scattering), the other on soaking crystals in various salts of caesium and iodine for a MIRAS (multiple isomorphous replacement with anomalous scattering) approach.
-
Evans G., Bricogne G. Triiodide derivatization and combinatorial counter-ion replacement: two methods for enhancing phasing signal using laboratory Cu Kα X-ray equipment. Acta Crystallogr D. 58:2002;976-991. Two ingenious methods of phasing the in-house diffraction data are proposed: one based on incorporating the polyiodide anions for SIRAS (single isomorphous replacement with anomalous scattering), the other on soaking crystals in various salts of caesium and iodine for a MIRAS (multiple isomorphous replacement with anomalous scattering) approach.
-
(2002)
Acta Crystallogr D
, vol.58
, pp. 976-991
-
-
Evans, G.1
Bricogne, G.2
-
34
-
-
17944368301
-
The binding site of acetylcholine receptor visualized in the X-ray structure of a complex between α-bungarotoxin and a mimotope peptide
-
Harel M., Kasher R., Nicolas A., Guss J.M., Balass M., Fridkin M., Smit A.B., Brejc K., Sixma T.K., Katchalski-Katzir E., et al. The binding site of acetylcholine receptor visualized in the X-ray structure of a complex between α-bungarotoxin and a mimotope peptide. Neuron. 32:2001;265-275.
-
(2001)
Neuron
, vol.32
, pp. 265-275
-
-
Harel, M.1
Kasher, R.2
Nicolas, A.3
Guss, J.M.4
Balass, M.5
Fridkin, M.6
Smit, A.B.7
Brejc, K.8
Sixma, T.K.9
Katchalski-Katzir, E.10
-
35
-
-
0035121745
-
Practical experience with the use of halides for phasing macromolecular structures: A powerful tool for structural genomics
-
Dauter Z., Li M., Wlodawer A. Practical experience with the use of halides for phasing macromolecular structures: a powerful tool for structural genomics. Acta Crystallogr D. 57:2001;239-249.
-
(2001)
Acta Crystallogr D
, vol.57
, pp. 239-249
-
-
Dauter, Z.1
Li, M.2
Wlodawer, A.3
-
36
-
-
0034935704
-
Joachimiak A: Using surface-bound rubidium ions for protein phasing
-
Korolew S., Dementieva I., Sanishvili R., Minor W., Otwinowski Z. Joachimiak A: Using surface-bound rubidium ions for protein phasing. Acta Crystallogr D. 57:2001;1008-1012.
-
(2001)
Acta Crystallogr D
, vol.57
, pp. 1008-1012
-
-
Korolew, S.1
Dementieva, I.2
Sanishvili, R.3
Minor, W.4
Otwinowski, Z.5
-
37
-
-
0034940904
-
Protein crystal structure solution by fast incorporation of negatively and positively charged anomalous scatterers
-
Nagem R.A.P., Dauter Z., Polikarpov I. Protein crystal structure solution by fast incorporation of negatively and positively charged anomalous scatterers. Acta Crystallogr D. 57:2001;996-1002.
-
(2001)
Acta Crystallogr D
, vol.57
, pp. 996-1002
-
-
Nagem, R.A.P.1
Dauter, Z.2
Polikarpov, I.3
-
38
-
-
0035997119
-
Generating isomorphous heavy-atom derivatives by a quick-soak method. Part I: Test cases
-
A modification of the classic heavy-atom derivatization, based on shorter soaking in more concentrated salt solutions, is proposed. This leads to better derivatives and will be applicable to the high-throughput projects.
-
Sun P.D., Radaev S., Kattah M. Generating isomorphous heavy-atom derivatives by a quick-soak method. Part I: test cases. Acta Crystallogr D. 58:2002;1092-1098. A modification of the classic heavy-atom derivatization, based on shorter soaking in more concentrated salt solutions, is proposed. This leads to better derivatives and will be applicable to the high-throughput projects.
-
(2002)
Acta Crystallogr D
, vol.58
, pp. 1092-1098
-
-
Sun, P.D.1
Radaev, S.2
Kattah, M.3
-
39
-
-
0035997118
-
Generating isomorphous heavy-atom derivatives by a quick-soak method. Part II: Phasing of new structures
-
Sun P.D., Radaev S. Generating isomorphous heavy-atom derivatives by a quick-soak method. Part II: phasing of new structures. Acta Crystallogr D. 58:2002;1099-1103.
-
(2002)
Acta Crystallogr D
, vol.58
, pp. 1099-1103
-
-
Sun, P.D.1
Radaev, S.2
-
40
-
-
0036006755
-
Sine-enhanced Shake-and-Bake: The theoretical basis for applications to Se-atom substructures
-
Xu H., Hauptman H.A., Weeks C.M. Sine-enhanced Shake-and-Bake: the theoretical basis for applications to Se-atom substructures. Acta Crystallogr D. 58:2002;90-96.
-
(2002)
Acta Crystallogr D
, vol.58
, pp. 90-96
-
-
Xu, H.1
Hauptman, H.A.2
Weeks, C.M.3
-
41
-
-
0033896691
-
Maximum-likelihood density modification
-
Terwilliger T.C. Maximum-likelihood density modification. Acta Crystallogr D. 56:2000;965-972.
-
(2000)
Acta Crystallogr D
, vol.56
, pp. 965-972
-
-
Terwilliger, T.C.1
-
42
-
-
0034767119
-
A quick solution: Ab initio structure determination of a 19 kDa metalloproteinase using ACORN
-
The enormous power of the program ACORN for ab initio phasing at atomic resolution is demonstrated.
-
McAuley K.E., Jia-Xing Y., Dodson E.J., Lehmbeck J., Ostergaard P.R., Wilson K.S. A quick solution: ab initio structure determination of a 19 kDa metalloproteinase using ACORN. Acta Crystallogr D. 57:2001;1571-1578. The enormous power of the program ACORN for ab initio phasing at atomic resolution is demonstrated.
-
(2001)
Acta Crystallogr D
, vol.57
, pp. 1571-1578
-
-
McAuley, K.E.1
Jia-Xing, Y.2
Dodson, E.J.3
Lehmbeck, J.4
Ostergaard, P.R.5
Wilson, K.S.6
-
43
-
-
0035788107
-
Pushing the boundaries of molecular replacement with maximum likelihood
-
Read R.J. Pushing the boundaries of molecular replacement with maximum likelihood. Acta Crystallogr D. 57:2001;1373-1382.
-
(2001)
Acta Crystallogr D
, vol.57
, pp. 1373-1382
-
-
Read, R.J.1
-
44
-
-
0035788131
-
Spherically averaged phased translation function and its application to the search for molecules and fragments in electron-density maps
-
Vagin A.A., Isupov M.N. Spherically averaged phased translation function and its application to the search for molecules and fragments in electron-density maps. Acta Crystallogr D. 57:2001;1451-1456.
-
(2001)
Acta Crystallogr D
, vol.57
, pp. 1451-1456
-
-
Vagin, A.A.1
Isupov, M.N.2
-
47
-
-
0033732307
-
Apotheosis, not apocalypse: Methods in protein crystallography
-
Lamzin V.S., Perrakis A., Bricogne G., Jiang J., Swaminathan S., Sussman J.L. Apotheosis, not apocalypse: methods in protein crystallography. Acta Crystallogr D. 56:2000;1510-1511.
-
(2000)
Acta Crystallogr D
, vol.56
, pp. 1510-1511
-
-
Lamzin, V.S.1
Perrakis, A.2
Bricogne, G.3
Jiang, J.4
Swaminathan, S.5
Sussman, J.L.6
|