Presence of anaerobic Bacteroides in aerobically grown microbial granules

Microbial Ecology

Volumn 44, Issue 3, 2002, Pages 278-285

  Tay, Stephen T L ^a   Ivanov, V ^a   Yi, S ^a   Zhuang, W Q ^a   Tay, J H ^a  

^a NANYANG TECHNOLOGICAL UNIVERSITY   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVATED SLUDGE; BACTERIUM; WASTEWATER;

BACTERIA (MICROORGANISMS); BACTEROIDES; BACTEROIDES SP.;

BACTERIAL DNA; RIBOSOME DNA; RNA 16S;

AEROBIC METABOLISM; ANAEROBIC BACTERIUM; ARTICLE; BACTEROIDES; CONFOCAL MICROSCOPY; FLOW CYTOMETRY; FLUORESCENCE IN SITU HYBRIDIZATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; PHYLOGENY;

AEROBIOSIS; BACTERIA, ANAEROBIC; BACTEROIDES; DNA, BACTERIAL; DNA, RIBOSOMAL; FLOW CYTOMETRY; IN SITU HYBRIDIZATION, FLUORESCENCE; MICROSCOPY, CONFOCAL; PHYLOGENY; RNA, RIBOSOMAL, 16S;

EID: 0036782009     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-002-2014-z     Document Type: Article

References (51)

1. Ahn KH, Yoo H, Lee JW, Maeng SK, Park KY, Song KG (2001) Acetate injection into anaerobic settled sludge for biological P-removal in an intermittently aerated reactor. Wat Sci Technol 44:77-85
2. Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
3. Amann R, Kuhn M (1998) In situ methods for assessment of microorganisms and their activities. Curr Opin Microbiol 1:352-358
4. Amann RI, Krumholz L, Stahl DA (1990) Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J Bacteriol 2:762-770
5. Bernhard AE, Field KG (2000). Identification of nonpoint sources of fecal pollution in coastal waters by using host-specific 16S ribosomal DNA genetic markers from fecal anaerobes. Appl Environ Microbiol 66:1587-1594
6. Bernhard AE, Field KG (2000) A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA. Appl Environ Microbiol 66:4571-4574
7. Boeckelmann U, Manz W, Neu TR, Szewzyk U (2000) Characterization of the bacterial community of lotic organic aggregates ('river snow') in the Elbe River of Germany using cultivation and molecular methods. FEMS Microbiol Ecol 33:157-170
8. Beun JJ, Hendriks A, van Loosdrecht MCM, Morgenroth E, Wilderer PA, Heijnen JJ (1999) Aerobic granulation in a sequencing batch reactor. Wat Res 33:2283-2290
9. Beun JJ, van Loosdrecht MCM, Heijnen JJ (2000) Aerobic granulation. Wat Sci Tech 41:41-48
10. Beun JJ, van Loosdrecht MCM, Heijnen JJ (2002) Aerobic granulation in a sequencing batch airlift reactor. Wat Res 36:702-712
11. Bradshaw DJ, Marsh PD, Watson GK, Allison C (1998) Role of Fusobacterium nucleatum and coaggregation in anaerobe survival in planktonic and biofilm oral microbial communities during aeration. Infect Immun 66:4729-4732
12. Dangcong P, Bernet N, Delgenes JP, Moletta R (1999) Aerobic granular sludge - a case report. Wat Res 33:890-893
13. Dewhirst FE, Chien CC, Paster BJ, Ericson RL, Orcutt RP, Schauer DB, Fox JG (1999) Phylogeny of the defined murine microbiota: altered Schaedler flora. Appl Environ Microbiol 65:3287-3292
14. Dojka MA, Hugenholtz P, Haack SK, Pace NR (1998) Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation. Appl Environ Microbiol 64:3869-3873
15. Dore J, Sghir A, Hannequart-Gramet A, Gorthier G, Pochart P (1998) Design and evaluation of a 16S rRNA-targeted oligonucleotide probe for specific detection and quantification of human faecal Bacteroides populations. Syst Appl Microbiol 1:65-71
16. Fang HHP, Chui HK, Li YY (1994) Microbial structure and activity of UASB granulates treating different wastewaters. Wat Sci Technol 30:87-96
17. Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368-376
18. Felsenstein J (1993) PHYLIP (phylogenetic inference package), version 3.51c. Department of Genetics, University of Washington, Seattle, USA.
19. Field JA, Stams AJ, Kato M, Schraa G (1995) Enhanced biodegradation of aromatic pollutants in cocultures of anaerobic and aerobic bacterial consortia. Antonie Van Leeuwenhoek 67:47-77
20. Gieseke A, Purkhold U, Wagner M, Amann R, Schramm A (2001) Community structure and activity dynamics of nitrifying bacteria in a phosphate-removing biofilm. Appl Environ Microbiol 67:1351-1362
21. Godon JJ, Zumstein E, Dabert P, Habouzit F, Moletta R (1997) Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis. Appl Environ Microbiol 63:2802-2813
22. Guiot SR, Pauss A, Costerton JW (1992) A structured model of the anaerobic granule consortium. Wat Sci Technol 25:1-10
23. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp 41:95-98
24. Helmer C, Tromm C, Hippen A, Rosenwinkel KH, Seyfried CF, Kunst S (2001) Single stage biological nitrogen removal by nitritation and anaerobic ammonium oxidation in biofilm systems. Wat Sci Technol 43:311-320
25. AL. In: JG Holt (editor-in-chief) Bergey's Manual of System atic Bacteriology, vol 1. Williams & Witkins, Baltimore, pp 604-631
26. Ito T, Okabe S, Satoh H, Watanabe Y (2002) Successional development of sulfate-reducing bacterial populations and their activities in a wastewater biofilm growing under microaerophilic conditions. Appl Environ Microbiol 68:1392-1402
27. Kim IS, Ivanov VN (2000) Detection of nitrifying bacteria in activated sludge by fluorescent in situ hybridization and fluorescence spectrometry. World J Microbiol Biotechnol 16:425-430
28. Kowalchuk GA, Stephen JR, De Boer W, Prosser JI, Embley TM, Woldendorp JW (1997) Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments. Appl Environ Microbiol 63:1489-1497
29. Krause DO, Smith WJM, Ryan FME, Mackie RI, McSweeney CS (1999) Use of 16S-rRNA based techniques to investigate the ecological succession of microbial populations in the immature lamb rumen: tracking of a specific strain of inoculated Ruminococcus and interactions with other microbial populations in vivo. Microb Ecol 38:365-376
30. Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic Acid Techniques in Bacterial Systematic, John Wiley & Sons, New York, pp 115-175
31. LaPara TM, Nakatsu CH, Pantea L Alleman JE (2000) Phylogenetic analysis of bacterial communities in mesophilic and thermophilic bioreactors treating pharmaceutical wastewater. Appl Environ Microbiol 66:3951-3959
32. Lettinga G, van Velsen AFM, Hobma SW, de Zeeuw W, Klapwijk A (1980) Use of the upfiow sludge blanket (USB) reactor concept for biological wastewater treatment especially for anaerobic treatment. Biotechnol Bioeng 22:699-734.
33. Maidak BL, Cole JR, Lilbura TG, Parker CT, Saxman Jr PR, Farris RJ, Garrity GM, Olsen GJ, Schmidt TM, Tiedje JM (2001) The RDP-II (Ribosomal Database Project). Nucleic Acids Res 29:173-174
34. Manz W, Amann R, Ludwig W, Vancanneyt M, Schleifer KH (1996) Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum Cytophaga-Flavobacter-Bacteroides in the natural environment. Microbiology 142:1097-1106
35. Manz W, Wendt-Potthoff K, Neu TR, Szewzyk U, Lawrence JR (1999) Phylogenetic composition, spatial structure, and dynamics of lotic bacterial biofilms investigated by fluorescent in situ hybridization and confocal laser scanning microscopy. Microb Ecol 37:225-237
36. Massol-Deya AA, Whallon J, Hickey RF, Tiedje JM (1995) Channel structures in aerobic biofilms of fixed-film reactors treating contaminated groundwater. Appl Environ Microbiol 61:769-777
37. Morgenroth E, Sherdan T, van Loosdrecht MCM, Heijnen JJ, Wilderer PA (!997) Aerobic granular sludge in a sequencing batch reactor. Wat Res 31:3191-3194
38. Neefs JM, Peer Y, Hendriks L, Wachter R (1990) Compilation of small ribosomal subunit RNA sequences. Nucleic Acids Res 18:2237-2317
39. Olsen GJ, Matsuda H, Hagstrom R, Overbeek R (1994) FastDNAml: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput Appl Biosci 10:41-48
40. Peng DC, Nicolas B, Jean-Philippe D, Rene M (1999) Aerobic granular sludge - a case report. Wat Res 33:890-893
41. Rocheleau S, Greer CW, Lawerence JR, Cantin C, Laramee L, Guiot SR (1999) Differentiation of Methanosaeta concelli and Methanosarcina barkeri in anaerobic mesophilic granular sludge by fluorescent in situ hybridization and confocal scanning laser microscopy. Appl Environ Microbiol 65:2222-2229
42. Schramm A, Santegoeds CM, Nielsen HK, Ploug H, Wagner M, Pribyl M, Wanner J, Amann R, de Beer D (1999) On the occurrence of anoxic microniches, denitrification, and sulfate reduction in aerated activated sludge. Appl Environ Microbiol 65:4189-4196
43. Sghir A, Gramet G, Suau A, Rochet V, Pochart P, Dore J (2000) Quantification of bacterial groups within human fecal flora by oligonucleotide probe hybridization. Appl Environ Microbiol 66:2263-2266
44. Shah HN (1992) The genus Bacteroides and related taxa. In: A Balows, HG Truper, M Dworkin, W Harder, KH Schleifer (eds) The Prokaryotes, 2nd ed, vol 4. Springer-Verlag, New York, pp 3593-3606
45. Tay JH, Yan YG (1997) Anaerobic biogranulation as microbial response to substrate adequacy. J Environ Eng 123:1002-1010
46. Tay JH, Liu QS, Liu Y (2001) Microscopic observation of aerobic granulation in sequential aerobic sludge reactor. J Appl Microbiol 91:168-175
47. Tay STL, Hemond HF, Polz MF, Cavanaugh CM, Dejesus I, Krumholz LR (1998) Two new mycobacterium strains and their role in toluene degradation in a contaminated stream. Appl Environ Microbiol 64:1715-1720
48. Tolker-Nielsen T, Molin S (2000) Spatial organization of microbial biofilm communities. Microb Ecol 40:75-84
49. Villaverde S, Fernandez-Polanco F (1999) Spatial distribution of respiratory activity in Pseudomonas putida 54G biofilms degrading volatile organic compounds (VOC). Appl Microbiol Biotechnol 51:382-387
50. Wood J, Scott KP, Avgustin G, Newbold CJ, Flint HJ (1998) Estimation of the relative abundance of different Bacteroides and Prevotella ribotypes in gut samples by restriction enzyme profiling of PCR-amplified 16S rRNA gene sequences. Appl Environ Microbiol 64:3683-3689
51. Yu T, Bishop PL (2001) Stratification and oxidation-reduction potential change in an aerobic and sulfate-reducing biofilm studied using microelectrodes. Wat Environ Res 73:368-373