16S-like rDNA sequences from Developayella elegans, Labyrinthuloides haliotidis, and Proteromonas lacertae confirm that the stramenopiles are a primarily heterotrophic group

European Journal of Protistology

Volumn 32, Issue 4, 1996, Pages 449-458

  Leipe, D D ^a   Tong, S M ^a   Goggin, C L ^a   Slemenda, S B ^a   Pieniazek, N J ^a   Sogin, M L ^a  

^a MARINE BIOLOGICAL LABORATORY   (United States)

Author keywords

Chromophytes; Evolution; Phylogeny; Proteromonads; Stramenopiles

Indexed keywords

ALGAE; BICOSOECIDA; CHROMOPHYTA; CRYPTOPHYTA; DEVELOPAYELLA; DEVELOPAYELLA ELEGANS; DINOPHYCEAE; EUKARYOTA; HAPTOPHYCEAE; LABYRINTHULIDA; LABYRINTHULOIDES HALIOTIDIS; OOMYCETES; PROTEROMONAS LACERTAE; PROTOZOA; STRAMENOPILES;

EID: 0030452031     PISSN: 09324739     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0932-4739(96)80004-6     Document Type: Article

References (56)

1. A. Alexeieff Mitochondries chez quelques protistes C. R. Soc. Biol. 79 1916 1076 1079
2. E.V. Ariztia R.A. Andersen M.L. Sogin A new phylogeny for chromophyte algae using 16S-like rRNA sequences from Mallomonas papillosa (Synurophyceae) and Tribonema aequale (Xanthophyceae) J. Phycol. 27 1991 428 436
3. D.J.S. Barr P.M.E. Allan A comparison of the flagellar apparatus in Phytophthora, Saprolegnia, Thraustocbytrium , and Rhizidiomyces Can. J. Bot. 63 1985 138 154
4. D.J.S. Barr N.L. Desaulniers The flagellar apparatus of the oomycetes and hyphochytriomycetes J.C. Green B.S.C. Leadbreater W.L. Diver The chromophyte algae: problems and perspectives 1989 Clarendon Press Oxford 343 355
5. S. Bartnicki-Garcia Cell wall composition and other biochemical markers in fungal phylogeny J.G. Harborne Phytochemical phylogeny 1970 Academic Press New York 81 103
6. G.W. Beakes Oomycete phylogeny: ultrastructural perspectives A.D.M. Rayner C.M. Brasier D. Moore Evolutionary biology of the Fungi 1987 Cambridge University Press Cambridge 405 421
7. D. Bhattacharya L. Medlin P.O. Wainright E.V. Ariztia C. Bibeau S.K. Stickel M.L. Sogin Algae containing chlorophylls a + c are paraphyletic: molecular evolutionary analysis of the chromophyta Evolution 46 1992 1801 1817
8. D. Bhattacharya S.K. Stickel M.L. Sogin Molecular phylogenetic analysis of actin genic regions from Achlya bisexualis (Oomycota) and Costaria costata (Chromophyta) J. Mol. Evol. 33 1991 525 536
9. G. Brugerolle C.F. Bardele Cortical cytoskeleton of the flagellate Proteromonas lacertae : interrelation between microtubules, membrane and somatonemes Protoplasma 142 1988 46 54
10. G. Brugerolle L. Joyon Etude cytologique ultrastructurale des genres Proteromonas et Karotomorpha (Zoomastigophora, Proteromonadida Grasse 1952) Protistologica 11 1975 531 546
11. T. Cavalier-Smith The kingdom Chromista: origin and systematics F.E. Round D.J. Chapman Progress in phycological research 1986 BioPress Bristol 309 347
12. T. Cavalier-Smith The kingdom Chromista J.C. Green B.S.C. Leadbeater W.L. Diver The chromophyte algae: problems and perspectives 1989 Clarendon Press Oxford 381 407
13. T. Cavalier-Smith Kingdom Protozoa and its 18 phyla Microbiol. Rev. 57 1993 953 994
14. T. Cavalier-Smith The protozoan phylum Opalozoa J. Euk. Microbiol. 40 1993 609 615
15. T. Cavalier-Smith Origin and relationships of Haptophyta J.C. Green B.S.C. Leadbeater The haptophyte algae 1994 Clarendon Press Oxford 413 435
16. T. Cavalier-Smith E.E. Chao M.T.E.P. Allsopp Ribosomal RNA evidence for chloroplast loss with heterokonta: pedinellid relationships and a revised classification of ochristan algae Arch. Protistenkd. 145 1995 209 220
17. E.C. Chrisp R. Mason L.E. Perryman Comparison of Cryptosporidium parvum and Cryptosporidium wrairi by reactivity with monoclonal antibodies and ability to infect severe combined immunodeficient mice Infect. Immun. 63 1995 360 362
18. J.O. Corliss An interim utilitarian (“user-friendly”) hierarchical classification and characterization of the protists Acta Protozool. 33 1994 1 51
19. M.W. Dick The ecology of aquatic phycomycetes E.B.J. Jones Recent advances in aquatic mycology 1976 Halsted London
20. H.J. Elwood G.J. Olsen M.L. Sogin The small-subunit ribosomal RNA gene sequences from the hypotrichous ciliates Oxytricha nova and Stylonychia pustulata Mol. Biol. Evol. 2 1985 399 410
21. H. Felsenstein Confidence intervals on phyloge-nies: an approach using the bootstrap Evolution 39 1985 783 791
22. H. Felsenstein PHYLIP 3.4 — Computer package distributed by the author. Department of Genetics SK-50 1991 University of Washington Seattle, Washington 98195
23. K.G. Grell A. Heini S. Schüller The ultra-structure of Reticulosphaera socialis Grell (Heterokontophyta) Europ. J. Protistol. 26 1990 37 54
24. J.H. Gunderson H. Elwood A. Ingold K. Kindle M.L. Sogin Phylogenetic relationships between chlorophytes, chrysophytes and oomycetes Proc. Natl. Acad. Sci. USA 84 1987 5823 5827
25. D.J. Hibberd The ultrastructure and taxonomy of the Chrysophyceae and Prymnesiophyceae (Haptophyceae); a survey with some new observations on the ultra-structure of the Chrysophyceae Bot. J. Linn. Soc 72 1976 55 80
26. D.J. Hibberd The structure and phylogenetic significance of the flagellar transitional region in the chlorophyll c-containing algae BioSystems 11 1979 243 261
27. M. Kimura A simple method for estimating evolutionary rate of basae substitutions through comparative studies of nucleotide sequences J. Mol. Evol. 16 1980 111 120
28. P. Kugrens R.E. Lee Organization of cryptomonads D.J. Patterson J. Larsen The biology of free-living heterotrophic flagellates 1991 Clarendon Press Oxford
29. P. Kugrens R.E. Lee R.E. Andersen Ultra-structural variations in cryptomonad flagella J. Phycol. 23 1987 511 518
30. J.J. Lee Order 3. Proteromonadida J.J. Lee S.H. Hutner E.C. Bovee An illustrated guide to the protozoa 1985 Society of Protozoologists Lawrence
31. Leipe D. D. (submitted)
32. D.D. Leipe P.O. Wainright J.H. Gunderson D. Porter D.J. Patterson F. Valois S. Himmerich M.L. Sogin The stramenopiles from a molecular perspective: 16S-like rRNA sequences from Labyrinthuloides minutum and Cafeteria roenbergensis Phycologia 33 1994 369 377
33. L. Margulis Five kingdom classification and the origin and evolution of cells Evol. Biol. 7 1974 45 78
34. G.I. McFadden P.R. Gilson D.R.A. Hill Goniomonas : rRNA sequences indicate that this phagotrophic flagellate is a close relative of the host component of cryptomonads Eur. J. Phycol. 29 1994 29 32
35. L. Medlin H.J. Elwood S. Stickel M.L. Sogin The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions Gene 71 1988 491 499
36. Ø. Moestrup H.A. Thomsen Fine structural studies on the flagellate genus Bicoeca . I. Bicoeca maris with particular emphasis on the flagellar apparatus Protistologica 12 1976 101 120
37. K.B. Mullis F.A. Faloona Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction Methods Enzymol. 155 1987 335 350
38. D. Nie Morphology and taxonomy of the intestinal protozoa of the guinea pig, Cavia porcella J. Morphol. 86 1950 381 493
39. G.J. Olsen Phylogenetic analysis and ribosomal RNA Methods Enzymol. 164 1988 793 812
40. G.J. Olsen H. Matsuda R. Hagstrom R. Overbeek fastDNAml: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood Comput. Appl. Biosci. 10 1994 41
41. G.J. Olsen R. Overbeek N. Larsen T.L. Marsh M.J. McCaughey M.A. Maciukenas W.-M. Kuan T.J. Macke Y. Xing C.R. Woese The Ribosomal Database Project Nucl. Acids Res. 20 1992 2199 2200
42. D.J. Patterson The fine structure of Opalina ranarum (Family Opalinidae): opalinid phylogeny and classification Protistologica 21 1985 413 428
43. D.J. Patterson The actinophryid heliozoa (Sarcodina, Actinopoda) as chromophytes J. Kristiansen R.A. Andersen Chrysophytes: aspects and problems 1986 Cambridge University Press Cambridge 49 67
44. D.J. Patterson Stramenopiles: chromophytes from a protistan perspective J.C. Green B.S.C. Leadbeater W.L. Diver The chromophyte algae: problems and perspectives 1989 Clarendon Press Oxford 357 379
45. D.J. Patterson T. Fenchel Insights into the evolution of heliozoa (Protozoa, Sarcodina) as provided by ultrastructural studies on a new species of flagellate from the genus Pteridomonas : Biol J. Linn. Soc 34 1985 381 403
46. F.O. Perkins Reassignment of Labyrinthula minuta to the genus Labyrinthuloides Mycologia 66 1974 697 702
47. H.R. Preisig The flagellar base ultrastructure and phylogeny of chromophytes J.C. Green B.S.C. Leadbeater W.L. Diver The chromophyte algae: problems and perspectives 1989 Clarendon Press Oxford 167 187
48. N. Saitou M. Nei The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol. Biol. Evol. 4 1987 406 425
49. F. Sanger S. Nicklen A.R. Coulson DNA sequencing with chain-terminating inhibitors Proc. Natl. Acad. Sci. USA 74 1977 5463 5467
50. G.W. Saunders D. Potter M.P. Paskind R.A. Andersen Cladistic analyses of combined traditional and molecular data sets reveal a new algal lineage Proc. Natl. Acad. Sci. USA 92 1995 244 248
51. D.L. Swofford PAUP. Phylogenetic analysis using parsimony, Ver. 3.0. Computer program distributed by the 1990 Illinois Natural History Survey Champaign, IL. USA
52. F.J.R. Taylor Problems in the development of an explicit hypothetical phylogeny of the lower eukaryotes BioSystems 10 1978 67 89
53. S.R. Todd Studies on some parasitic flagellates of certain wild mammals of Hyderabad Arch. Protistenkd. 107 1963 1 116
54. S.M. Tong Developayella elegans , nov. gen., nov. spec, a new type of heterotrophic flagellate from marine plankton Europ. J. Protistol. 31 1995 24 31
55. S.W. Watson K.B. Raper Labyrinthula minuta sp. nov J. Gen. Microbiol. 17 1957 368 377
56. R.H. Whittaker New concepts of kingdoms of organisms Science 163 1969 150 160