The evolution of the heat-shock protein GroEL from Buchnera, the primary endosymbiont of aphids, is governed by positive selection

Molecular Biology and Evolution

Volumn 19, Issue 7, 2002, Pages 1162-1170

  Fares, Mario Ali ^a   Barrio, Eladio ^a   Sabater Muñoz, Beatriz ^a   Moya, Andrés ^a  

^a UNIVERSITY OF VALENCIA   (Spain)

Author keywords

Aphid endosymbionts; Buchnera aphidicola; groEL; Positive selection; Rates of evolution

Indexed keywords

CHAPERONIN; HEAT SHOCK PROTEIN; PRIMER DNA;

AMINO ACID SUBSTITUTION; APHID; ARTICLE; BUCHNERA; CELL LINEAGE; CODON; CONFORMATIONAL TRANSITION; ENDOSYMBIOSIS; ESCHERICHIA COLI; EVOLUTION; GENE OVEREXPRESSION; GENETIC SELECTION; MAXIMUM LIKELIHOOD METHOD; MOLECULAR DYNAMICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN DEGRADATION; PROTEIN DOMAIN; PROTEIN FOLDING; PROTEIN LOCALIZATION; PROTEIN STRUCTURE; PROTEIN SYNTHESIS; SEQUENCE ANALYSIS; SLIDING WINDOW ANALYSIS; STATISTICAL ANALYSIS; ANIMAL; CHEMISTRY; GENETICS; IN VITRO STUDY; METABOLISM; MICROBIOLOGY; MOLECULAR EVOLUTION; OPERON; PHYLOGENY; PHYSIOLOGY; POLYMERASE CHAIN REACTION; SYMBIOSIS;

APHIDIDAE; ARACHNIDA; BUCHNERA; BUCHNERA APHIDICOLA; ESCHERICHIA COLI; HEXAPODA; INSECTA;

AMINO ACID SUBSTITUTION; ANIMALS; APHIDS; BUCHNERA; CELL LINEAGE; DNA PRIMERS; ESCHERICHIA COLI; EVOLUTION, MOLECULAR; GROEL PROTEIN; OPERON; PHYLOGENY; POLYMERASE CHAIN REACTION; SELECTION (GENETICS); SYMBIOSIS;

EID: 0036632266     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a004174     Document Type: Article

References (75)

1. A novel strong promoter of the groEx operon of symbiotic bacteria in Amoeba proteus
2. Within- and between-species DNA sequence variation and the "footprint" of natural selection
3. Molecular analysis of the endosymbiont of tsetse flies: 16S rDNA and overexpression of a chaperonin
4. Levels of Buchnera aphidicola chaperonin groEL during growth of the aphid Schizaphys graminum
5. Genetic, physiology and evolutionary relationships of the genus Buchnera: Intracellular symbiont of aphids
6. Conformational variability in the refined structure of the chaperonin GroEL at 2.8 Å resolution
7. The crystal structure of the bacterial chaperonin GroEL at 2.8 Å
8. Evolutionary rates for tuf genes in endosymbionts of aphids
9. A molecular aspect of symbiotic interactions between the weevil Sitophilus oryzae and its endosymbiotic bacteria: Over-expression of a chaperonin
10. Mitochondrial heat-shock protein hsp60 is essential for assembly of proteins imported into yeast mitochondria
11. Sequence evolution in bacterial endosymbionts having extreme base composition
12. Parallel evolution of drug resistance in HIV: Failure of nonsynonymous/synonymous substitution rate ratio to detect selection
13. Recombination in E. coli and the definition of biological species
14. Molecular chaperones: Opening and closing the anfinsen cage
15. The groES and groEL heat shock gene products of Escherichia coli are essential for bacterial growth at all temperatures
16. Evolutionary trees from DNA sequences: A maximum likelihood approach
17. GroEL-mediated protein folding
18. Residues in chaperonin GroEL required for polypeptide binding and release
19. Towards defining the course of evolution: Minimum change for a specific tree topology
20. Intraspecific variation in symbiont genomes: Bottlenecks and the aphid-buchnera association
21. Role of the major heat shock proteins as molecular chaperones
22. Protein folding in the cell
23. A codon-based model of nucleotide substitutions for protein-coding DNA sequences
24. The predominant protein in an aphid endosymbiont is homologous to an E. coli heat shock protein
25. Molecular chaperone in cellular protein folding
26. Dating the human-ape splitting by a molecular clock of mitochondrial DNA
27. Homologous plant and bacterial proteins chaperone oligomeric protein assembly
28. The control of the mycetocyte symbiotes of the aphids Brevicoryne brassicae, Myzus persicae and Macrosiphum rosae
29. Identifying the determinants in the equatorial domain of Buchnera GroEL implicated in binding Potato leafroll virus
30. Phylogeny estimation and hypothesis testing using maximum likelihood
31. Host-symbiont interactions in the protein synthesis in the pea aphid, Acyrthosiphon pisum
32. Characterization of the protein species synthesized in vivo and in vitro by an aphid endosymbiont
33. Evolution of protein molecules
34. Functional communications between the apical and equatorial domains of GroEL through the intermediate domain
35. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
36. Deleterious mutations destabilize ribosomal RNA in endosymbiotic bacteria
37. Characterization of a functionally important mobile domain GroES
38. Evolution of mitochondrial DNA in Drosophila subobscura
39. Vector specificity of barley yellow dwarf virus (BYDV) transmission: Identification of potential cellular receptors binding BYDV-MAV in the aphid, Sitobion avenae
40. GroEL under heat-shock. Switching from a folding to a storing function
41. Mutation accumulation in transfer RNAs: Molecular evidence for Muller's ratchet in mitochondrial genomes
42. Mutation accumulation in nuclear, organelle, and prokaryotic transfer RNA genes
43. Localized sex in bacteria
44. How clonal are bacteria?
45. Accelerated evolution and Muller's ratchet in endosymbiotic bacteria
46. Faster evolutionary rates in endosymbiotic bacteria than in cospeciating insect hosts
47. The relation of the recombination to mutational advance
48. Slightly deleterious mutant substitutions in evolution
49. The nearly neutral theory of molecular evolution
50. Structure of chaperonins from an intracellular symbiont and their functional expression in Escherichia coli groEL mutants
51. Chaperonins
52. Distinct actions of cis and trans ATP within the double ring of the chaperonin GroEL
53. Unbiased estimates of the number of nucleotide substitutions when substitution rate varies among different sites
54. The Neighbor-Joining method: A new method for reconstructing phylogenetic trees
55. Genetic structure and variation in natural populations of Escherichia coli
56. In search of molecular Darwinism
57. Structure and function in GroEL-mediated protein folding
58. A method for detecting positive selection at single amino acid site
59. Phylogenetic test of the molecular clock and linearized tree
60. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
61. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
62. Postsymbiotic plasmid acquisition and evolution of the repA1-replicon in Buchnera aphidicola
63. Characterization of the active intermediate of a GroEL-GroES-mediated protein folding reaction
64. Evidence for genetic drift in endosymbionts (Buchnera): Analysis of protein-coding genes
65. 7 chaperonin complex
66. GroEL/GroES: Structure and function of the two-stroke folding machine
67. Estimating the pattern of nucleotide substitution
68. Luteovirus interactions with aphid vector cellular components
69. The universally conserved GroE (Hsp60) chaperonins
70. Positive Darwinian selection after gene duplication in primate ribonuclease genes