메뉴 건너뛰기




Volumn 15, Issue 5, 1998, Pages 574-582

Evolutionary rates for tuf genes in endosymbionts of aphids

Author keywords

Buchnera aphidicola; Elongation factor Tu; Molecular evolution; Mutation bias; Substitution rates

Indexed keywords

DNA; ELONGATION FACTOR TU;

EID: 0031925286     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a025958     Document Type: Article
Times cited : (55)

References (51)
  • 1
    • 0029240240 scopus 로고
    • Mycetosome endosymbionts of tsetse flies constitute a distinct lineage related to Enterobacteriaceae
    • AKSOY, S., A. A. POURHOSSEINI, and A. CHOW. 1995. Mycetosome endosymbionts of tsetse flies constitute a distinct lineage related to Enterobacteriaceae. Insect Mol. Biol. 4: 15-22.
    • (1995) Insect Mol. Biol. , vol.4 , pp. 15-22
    • Aksoy, S.1    Pourhosseini, A.A.2    Chow, A.3
  • 2
    • 0029402902 scopus 로고
    • Genomic evolution drives the evolution of the translation system
    • ANDERSSON, S. G. E., and C. G. KURLAND. 1995. Genomic evolution drives the evolution of the translation system. Biochem. Cell Biol. 73:775-787.
    • (1995) Biochem. Cell Biol. , vol.73 , pp. 775-787
    • Andersson, S.G.E.1    Kurland, C.G.2
  • 3
    • 0029938306 scopus 로고    scopus 로고
    • Codon usage and base composition in Rickettsia prowazekii
    • ANDERSSON, S. G. E., and P. M. SHARP. 1996. Codon usage and base composition in Rickettsia prowazekii. J. Mol. Evol. 42:525-536.
    • (1996) J. Mol. Evol. , vol.42 , pp. 525-536
    • Andersson, S.G.E.1    Sharp, P.M.2
  • 4
    • 0029819318 scopus 로고    scopus 로고
    • The root of the universal tree and the origin of eukaryotes based on elongation factor phylogeny
    • BALDAUF, S. L., J. P. PALMER, and W. F. DOOLITTLE. 1996. The root of the universal tree and the origin of eukaryotes based on elongation factor phylogeny. Proc. Natl. Acad. Sci. USA 93:7749-7754.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 7749-7754
    • Baldauf, S.L.1    Palmer, J.P.2    Doolittle, W.F.3
  • 6
    • 0027931274 scopus 로고
    • Growth kinetics of the endosymbiont Buchnera aphidicola in the aphid Schizaphis gramium
    • BAUMANN, L., and P. BAUMANN. 1994. Growth kinetics of the endosymbiont Buchnera aphidicola in the aphid Schizaphis gramium. Appl. Environ. Microbiol. 60:3440-3443.
    • (1994) Appl. Environ. Microbiol. , vol.60 , pp. 3440-3443
    • Baumann, L.1    Baumann, P.2
  • 7
    • 0028803018 scopus 로고
    • Genetics, physiology, and evolutionary relationships of the genus Buchnera: Intracellular symbionts of aphids
    • BAUMANN, P., L. BAUMANN, C. Y. LAI, and D. ROUHBAKSH. 1995. Genetics, physiology, and evolutionary relationships of the genus Buchnera: intracellular symbionts of aphids. Annu. Rev. Microbiol. 49:55-94.
    • (1995) Annu. Rev. Microbiol. , vol.49 , pp. 55-94
    • Baumann, P.1    Baumann, L.2    Lai, C.Y.3    Rouhbaksh, D.4
  • 8
    • 0029079867 scopus 로고
    • Kinetics of synonymous codon change for an amino acid of arbitrary degeneracy
    • BERG, O. G. 1995. Kinetics of synonymous codon change for an amino acid of arbitrary degeneracy. J. Mol. Evol. 41: 345-352.
    • (1995) J. Mol. Evol. , vol.41 , pp. 345-352
    • Berg, O.G.1
  • 9
    • 0031586223 scopus 로고    scopus 로고
    • Growth rate-optimised tRNA abundance and codon usage
    • BERG, O. G., and C. G. KURLAND. 1997. Growth rate-optimised tRNA abundance and codon usage. J. Mol. Biol. 270: 544-550.
    • (1997) J. Mol. Biol. , vol.270 , pp. 544-550
    • Berg, O.G.1    Kurland, C.G.2
  • 10
    • 0029082357 scopus 로고
    • Synonymous substitution-rate constants in Escherichia coli and Salmonella typhimurium and their relationship to gene expression and selection pressure
    • BERG, O. G., and M. MARTELIUS. 1995. Synonymous substitution-rate constants in Escherichia coli and Salmonella typhimurium and their relationship to gene expression and selection pressure. J. Mol. Evol. 41:449-456.
    • (1995) J. Mol. Evol. , vol.41 , pp. 449-456
    • Berg, O.G.1    Martelius, M.2
  • 12
    • 0026724507 scopus 로고
    • Early evolutionary relationships among known life forms inferred from elongation factor EF-2/EF-G sequences: Phylogenetic coherence and structure of the archaeal domain
    • CAMMARANO, P., P. PALM, R. CRETI, E. CECCARELLI, A. M. SANANGELANTONI, and O. TIBONI. 1992. Early evolutionary relationships among known life forms inferred from elongation factor EF-2/EF-G sequences: phylogenetic coherence and structure of the archaeal domain. J. Mol. Evol. 34:396-405.
    • (1992) J. Mol. Evol. , vol.34 , pp. 396-405
    • Cammarano, P.1    Palm, P.2    Creti, R.3    Ceccarelli, E.4    Sanangelantoni, A.M.5    Tiboni, O.6
  • 13
    • 11944273191 scopus 로고
    • Genetic loads and estimate of mutation rates in highly inbred plant populations
    • CHARLESWORTH, B., D. CHARLESWORTH, and M. T. MORGAN. 1993. Genetic loads and estimate of mutation rates in highly inbred plant populations. Nature 347:380-382.
    • (1993) Nature , vol.347 , pp. 380-382
    • Charlesworth, B.1    Charlesworth, D.2    Morgan, M.T.3
  • 14
    • 0026714708 scopus 로고
    • The eubacterial endosymbionts of whiteflies (Homoptera: Aleyrodoidea) constitute a lineage distinct from the endosymbionts of aphids and mealybugs
    • CLARK, M. A., L. BAUMANN, M. A. MUNSON, P. BAUMANN, B. C. CAMPBELL, J. E. DUFFUS, L. S. OSBORNE, and N. A. MORAN. 1992. The eubacterial endosymbionts of whiteflies (Homoptera: Aleyrodoidea) constitute a lineage distinct from the endosymbionts of aphids and mealybugs. Curr. Microbiol. 25:119-123.
    • (1992) Curr. Microbiol. , vol.25 , pp. 119-123
    • Clark, M.A.1    Baumann, L.2    Munson, M.A.3    Baumann, P.4    Campbell, B.C.5    Duffus, J.E.6    Osborne, L.S.7    Moran, N.A.8
  • 15
    • 0028202438 scopus 로고
    • Evolution of translational elongation factor (EF) sequences: Reliability of global phylogenies inferred from EF-1alph(Tu) and EF-2(G) proteins
    • CRETI, R., E. CECCARELLI, M. BOCCHETTA, A. M. SANANGELANTONI, O. TIBONI, P. PALM, and P. CAMMARANO. 1994. Evolution of translational elongation factor (EF) sequences: reliability of global phylogenies inferred from EF-1alph(Tu) and EF-2(G) proteins. Proc. Natl. Acad. Sci. USA 91:3255-3259.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 3255-3259
    • Creti, R.1    Ceccarelli, E.2    Bocchetta, M.3    Sanangelantoni, A.M.4    Tiboni, O.5    Palm, P.6    Cammarano, P.7
  • 16
    • 0030564828 scopus 로고    scopus 로고
    • Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates
    • DONG, H., L. NILSSON, and C. G. KURLAND. 1996. Co-variation of tRNA abundance and codon usage in Escherichia coli at different growth rates. J. Mol. Biol. 260:649-663.
    • (1996) J. Mol. Biol. , vol.260 , pp. 649-663
    • Dong, H.1    Nilsson, L.2    Kurland, C.G.3
  • 17
    • 0016110957 scopus 로고
    • The evolutionary advantage of recombination
    • FELSENSTEIN, J. 1974. The evolutionary advantage of recombination. Genetics 78:157-159.
    • (1974) Genetics , vol.78 , pp. 157-159
    • Felsenstein, J.1
  • 18
    • 0030464460 scopus 로고    scopus 로고
    • SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny
    • GALTIER, N., M. GOUY, and C. GAUTIER. 1996. SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. CABIOS 12:543-548.
    • (1996) CABIOS , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3
  • 19
    • 2642706708 scopus 로고
    • Fossil aphids, a catalogue of fossil aphids with notes on systematics and evolution
    • H. SZELEGIEWICZ, ed. Polska Acad. Nauk, Ossolineum, Warsaw
    • HEIE, O. E. 1985. Fossil aphids, a catalogue of fossil aphids with notes on systematics and evolution. Pp. 101-133 in H. SZELEGIEWICZ, ed. Evolution and biosystematics of aphids. Polska Acad. Nauk, Ossolineum, Warsaw.
    • (1985) Evolution and Biosystematics of Aphids , pp. 101-133
    • Heie, O.E.1
  • 20
    • 0000066156 scopus 로고
    • Paleontology and phylogeny
    • A. K. MINSK and P. HARREWIJN, eds. World crop pests. Elsevier, Amsterdam
    • _. 1987. Paleontology and phylogeny. Pp. 367-391 in A. K. MINSK and P. HARREWIJN, eds. Aphids: their biology, natural enemies and control. World crop pests. Elsevier, Amsterdam.
    • (1987) Aphids: Their Biology, Natural Enemies and Control , pp. 367-391
  • 21
    • 34250129701 scopus 로고
    • Nucleotide composition and kinetic complexity of the genomic DNA of an intracellular symbiont of the pea aphid Acyrthosiphon pisum
    • ISHIKAWA, H. 1987. Nucleotide composition and kinetic complexity of the genomic DNA of an intracellular symbiont of the pea aphid Acyrthosiphon pisum. J. Mol. Evol. 24: 205-211.
    • (1987) J. Mol. Evol. , vol.24 , pp. 205-211
    • Ishikawa, H.1
  • 22
    • 0024358140 scopus 로고
    • Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes
    • IWABE, N., K.-I. KUMA, M. HASEGAWA, S. OSAWA, and M. TAKASHI. 1989. Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes. Proc. Natl. Acad. Sci. USA 86:9355-9359.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 9355-9359
    • Iwabe, N.1    Kuma, K.-I.2    Hasegawa, M.3    Osawa, S.4    Takashi, M.5
  • 23
    • 0014421064 scopus 로고
    • Evolutionary rate at the molecular level
    • KIMURA, M. 1968. Evolutionary rate at the molecular level. Nature 217:624-626.
    • (1968) Nature , vol.217 , pp. 624-626
    • Kimura, M.1
  • 24
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • _. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
  • 25
    • 0026942313 scopus 로고
    • Evolution of mitochondrial genomes and the genetic code
    • KURLAND, C. G. 1992. Evolution of mitochondrial genomes and the genetic code. BioEssays 14:709-714.
    • (1992) BioEssays , vol.14 , pp. 709-714
    • Kurland, C.G.1
  • 26
    • 0027403961 scopus 로고
    • Unbiased estimation of the rates of synonymous and nonsynonymous substitution
    • LI, W.-H. 1993. Unbiased estimation of the rates of synonymous and nonsynonymous substitution. J. Mol. Evol. 36: 96-99.
    • (1993) J. Mol. Evol. , vol.36 , pp. 96-99
    • W-H, L.I.1
  • 27
    • 0022005270 scopus 로고
    • A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes
    • LI, W.-H., C. I. WU, and C.-C. LUO. 1985. A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes. Mol. Biol. Evol. 2:150-174.
    • (1985) Mol. Biol. Evol. , vol.2 , pp. 150-174
    • W-H, L.I.1    Wu, C.I.2    Luo, C.-C.3
  • 28
    • 0030034587 scopus 로고    scopus 로고
    • Mutation accumulation in transfer RNAs: Molecular evidence for Muller's ratchet in mitochondrial genomes
    • LYNCH, M. 1996. Mutation accumulation in transfer RNAs: molecular evidence for Muller's ratchet in mitochondrial genomes. Mol. Biol. Evol. 13:209-220.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 209-220
    • Lynch, M.1
  • 29
    • 0030802496 scopus 로고    scopus 로고
    • Mutation accumulation in nuclear, organelle, and prokaryotic transfer RNA genes
    • _. 1997. Mutation accumulation in nuclear, organelle, and prokaryotic transfer RNA genes. Mol. Biol. Evol. 14: 914-925.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 914-925
  • 30
    • 0028995999 scopus 로고
    • Mutational meltdowns in sexual populations
    • LYNCH, M., J. CONERY, and R. BÜRGER. 1995. Mutational meltdowns in sexual populations. Evolution 49:1067-1080.
    • (1995) Evolution , vol.49 , pp. 1067-1080
    • Lynch, M.1    Conery, J.2    Bürger, R.3
  • 31
  • 32
    • 0024927863 scopus 로고
    • A 48-million-year-old aphid-host plant association and complex life cycle: Biogeographic evidence
    • MORAN, N. 1989. A 48-million-year-old aphid-host plant association and complex life cycle: biogeographic evidence. Science 245:173-175.
    • (1989) Science , vol.245 , pp. 173-175
    • Moran, N.1
  • 33
    • 0006397154 scopus 로고
    • The evolution of life cycles in aphids
    • _. 1992. The evolution of life cycles in aphids. Annu. Rev. Entomol. 37:321-348.
    • (1992) Annu. Rev. Entomol. , vol.37 , pp. 321-348
  • 34
    • 0029866448 scopus 로고    scopus 로고
    • Accelerated evolution and Muller's ratchet in endosymbiotic bacteria
    • _. 1996. Accelerated evolution and Muller's ratchet in endosymbiotic bacteria. Proc. Natl. Acad. Sci. USA 93: 2873-2878.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 2873-2878
  • 35
    • 0027254254 scopus 로고
    • A molecular clock in endosymbiotic bacteria is calibrated using the insect hosts
    • MORAN, N. A., M. A. MUNSON, P. BAUMANN, and H. ISHIKAWA. 1993. A molecular clock in endosymbiotic bacteria is calibrated using the insect hosts. Proc. R. Soc. Lond. Biol. Sci. 253:167-171.
    • (1993) Proc. R. Soc. Lond. Biol. Sci. , vol.253 , pp. 167-171
    • Moran, N.A.1    Munson, M.A.2    Baumann, P.3    Ishikawa, H.4
  • 36
    • 2642678481 scopus 로고    scopus 로고
    • Bacteriocyte associated endosymbionts of insects
    • in press
    • MORAN, N. A., and A. TELANG. 1998. Bacteriocyte associated endosymbionts of insects. Bioscience (in press).
    • (1998) Bioscience
    • Moran, N.A.1    Telang, A.2
  • 37
    • 50549201557 scopus 로고
    • The relation of recombination to mutational advance
    • MULLER, H. J. 1964. The relation of recombination to mutational advance. Mutat. Res. 1:2-9.
    • (1964) Mutat. Res. , vol.1 , pp. 2-9
    • Muller, H.J.1
  • 38
    • 0025949380 scopus 로고
    • Evidence for the establishment of aphid-eubacterium endosymbiosis in an ancestor of four aphid families
    • MUNSON, M. A., P. BAUMANN, M. A. CLARK, L. BAUMANN, N. A. MORAN, D. J. VOEGTLIN, and B. C. CAMPBELL. 1991. Evidence for the establishment of aphid-eubacterium endosymbiosis in an ancestor of four aphid families. J. Bacteriol. 173:6321-6324.
    • (1991) J. Bacteriol. , vol.173 , pp. 6321-6324
    • Munson, M.A.1    Baumann, P.2    Clark, M.A.3    Baumann, L.4    Moran, N.A.5    Voegtlin, D.J.6    Campbell, B.C.7
  • 39
    • 0026004487 scopus 로고
    • Buchnera gen. nov. and Buchnera aphidicola sp nov., a taxon consisting of the mycetocyte-associated primary endosymbionts of aphids
    • MUNSON, M. A., P. BAUMANN, and M. G. KINSEY. 1991. Buchnera gen. nov. and Buchnera aphidicola sp nov., a taxon consisting of the mycetocyte-associated primary endosymbionts of aphids. Int. J. Syst. Bacteriol. 41:566-568.
    • (1991) Int. J. Syst. Bacteriol. , vol.41 , pp. 566-568
    • Munson, M.A.1    Baumann, P.2    Kinsey, M.G.3
  • 40
    • 0026822362 scopus 로고
    • Phylogenetic relationships of the endosymbionts of mealybugs (Homoptera: Pseudococcidae) based on 16S rRNA sequences
    • MUNSON, M. A., P. BAUMANN, and N. A. MORAN. 1992. Phylogenetic relationships of the endosymbionts of mealybugs (Homoptera: Pseudococcidae) based on 16S rRNA sequences. Mol. Phylogenet. Evol. 1:26-30.
    • (1992) Mol. Phylogenet. Evol. , vol.1 , pp. 26-30
    • Munson, M.A.1    Baumann, P.2    Moran, N.A.3
  • 41
    • 0026670564 scopus 로고
    • Testing for equality of evolutionary rates
    • MUSE, S. V., and B. S. WEIR. 1992. Testing for equality of evolutionary rates. Genetics 132:269-275.
    • (1992) Genetics , vol.132 , pp. 269-275
    • Muse, S.V.1    Weir, B.S.2
  • 43
    • 0023477438 scopus 로고
    • Very slightly deleterious mutations and the molecular clock
    • OHTA, T. 1987. Very slightly deleterious mutations and the molecular clock. J. Mol. Evol. 26:1-6.
    • (1987) J. Mol. Evol. , vol.26 , pp. 1-6
    • Ohta, T.1
  • 44
    • 0023319787 scopus 로고
    • Accumulation of mutations in sexual and asexual populations
    • PAMILO, P., N. NEI, and W.-H. LI. 1987. Accumulation of mutations in sexual and asexual populations. Genet. Res. 49: 135-146.
    • (1987) Genet. Res. , vol.49 , pp. 135-146
    • Pamilo, P.1    Nei, N.2    Li, W.-H.3
  • 45
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • SAITOU, N., and M. NEI. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 46
    • 0026002819 scopus 로고
    • Determinants of DNA sequence divergence between Escherichia coli and Salmonella typhimurium: Codon usage, map position and concerted evolution
    • SHARP, P. M. 1991. Determinants of DNA sequence divergence between Escherichia coli and Salmonella typhimurium: codon usage, map position and concerted evolution. J. Mol. Evol. 33:23-33.
    • (1991) J. Mol. Evol. , vol.33 , pp. 23-33
    • Sharp, P.M.1
  • 47
    • 0022856787 scopus 로고
    • An evolutionary perspective on synonymous codon usage in unicellular organisms
    • SHARP, P. M., and W.-H. LI. 1986. An evolutionary perspective on synonymous codon usage in unicellular organisms. J. Mol. Evol. 24:28-38.
    • (1986) J. Mol. Evol. , vol.24 , pp. 28-38
    • Sharp, P.M.1    Li, W.-H.2
  • 48
    • 0023274170 scopus 로고
    • The rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias
    • _. 1987. The rate of synonymous substitution in enterobacterial genes is inversely related to codon usage bias. Mol. Biol. Evol. 4:222-230.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 222-230
  • 49
    • 0029959771 scopus 로고    scopus 로고
    • A chimeric disposition of the elongation factor genes in Rickettsia prowazekii
    • SYVÄNEN, A.-C., H. AMIRI, A. JAMAL, S. G. E. ANDERSSON, and C. G. KURLAND. 1996. A chimeric disposition of the elongation factor genes in Rickettsia prowazekii. J. Bacteriol. 178:6192-6199.
    • (1996) J. Bacteriol. , vol.178 , pp. 6192-6199
    • Syvänen, A.-C.1    Amiri, H.2    Jamal, A.3    Andersson, S.G.E.4    Kurland, C.G.5
  • 50
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • THOMPSON, J. D., D. G. HIGGINS, and T. J. GIBSON. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 51
    • 0000378875 scopus 로고
    • Evidence for higher rates of nucleotide substitutions in rodents than in man
    • WU, C.-I., and W.-H. LI. 1995. Evidence for higher rates of nucleotide substitutions in rodents than in man. Proc. Natl. Acad. Sci. USA 82:1741-1745.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.82 , pp. 1741-1745
    • C-I, W.U.1    Li, W.-H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.