Fold recognition from sequence comparisons

Proteins: Structure, Function and Genetics

Volumn 45, Issue SUPPL. 5, 2001, Pages 68-75

  Koretke, Kristin K ^a   Russell, Robert B ^b   Lupas, Andrei N ^a  

^a GLAXOSMITHKLINE   (United States)

^b GLAXOSMITHKLINE   (United Kingdom)

Author keywords

HMMer; PSI Blast; SENSER; Sequence similarity; Structure prediction

Indexed keywords

PROTEIN; ACID ANHYDRIDE HYDROLASE; BACTERIAL PROTEIN; CARBOXYLESTERASE; GLYCOSIDASE; NUCLEOSIDE TRIPHOSPHATASE; PECTATE LYASE; PECTINESTERASE; POLYGALACTURONASE; POLYSACCHARIDE LYASE; SPO0A PROTEIN, BACILLUS SUBTILIS; TRANSCRIPTION FACTOR;

ACCURACY; AMINO ACID SEQUENCE; ARTICLE; COMPARATIVE STUDY; DATA BASE; NONHUMAN; PREDICTION; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN SECONDARY STRUCTURE; PROTEIN STRUCTURE; SEQUENCE HOMOLOGY; AUTOMATION; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER PROGRAM; COMPUTER SIMULATION; GEOBACILLUS STEAROTHERMOPHILUS; MOLECULAR GENETICS; PROTEIN CONFORMATION; PROTEIN DATABASE; PROTEIN TERTIARY STRUCTURE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; STREPTOCOCCUS MUTANS;

ACID ANHYDRIDE HYDROLASES; AMINO ACID SEQUENCE; AUTOMATION; BACILLUS STEAROTHERMOPHILUS; BACTERIAL PROTEINS; CARBOXYLIC ESTER HYDROLASES; COMPUTER SIMULATION; DATABASES, PROTEIN; GLYCOSIDE HYDROLASES; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEOSIDE-TRIPHOSPHATASE; POLYSACCHARIDE-LYASES; PROTEIN CONFORMATION; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, PROTEIN; SOFTWARE; STREPTOCOCCUS MUTANS; TRANSCRIPTION FACTORS;

EID: 0035703313     PISSN: 08873585     EISSN: None     Source Type: Journal    
DOI: 10.1002/prot.10000     Document Type: Article

References (21)

1. Fold recognition using sequence and secondary structure information
2. Predicting protein structure using only sequence information
3. Enhanced genome annotation using structural profiles in the program 3D-PSSM
4. Threading with explicit models for evolutionary conservation of structure and sequence
5. GenTHREADER: An efficient and reliable protein fold recognition method for genomic sequences
6. Successful recognition of protein folds using threading methods biased by sequence similarity and predicted secondary structure
7. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
8. Hidden Markov models for detecting remote protein homologies
9. Protein fold recognition by mapping predicted secondary structures
10. The solution structure of VAT-N reveals a "missing link" in the evolution of complex enzymes from a simple babb element
11. Evolution of two-component signal transduction
12. A workbench for multiple alignment construction and analysis
13. Detecting subtle sequence signals: A Gibbs sampling strategy for multiple alignment
14. Using CLUSTAL for multiple sequence alignments
15. Structure classification-based assessment of CASP3 predictions for the fold recognition targets
16. SCOP: A structural classification of proteins database for the investigation of sequences and structures
17. Multiple protein sequence alignment from tertiary structure comparison: Assignment of global and residue confidence levels
18. Fold change in the evolution of protein structures
19. Distantly related sequences in the alpha- and beta-subunits of ATP synthase, myosin, kinasesand other ATP-requiring enzymes and a common nucleotide binding fold
20. Self-compartmentalizing proteases
21. Sweet-tasting protein monellin is related to the cystatin family of thiol proteinase inhibitors