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Volumn 13, Issue 1, 2003, Pages 7-42

A Computational Biology database digest: Data, data analysis, and data management

Author keywords

Computational biology; Data analysis; Data integration; Data modelling; Molecular biology databases

Indexed keywords

COMPUTER SCIENCE; DATA ACQUISITION; DATA REDUCTION; DATA STRUCTURES; MATHEMATICAL MODELS; MOLECULAR BIOLOGY; NONBIBLIOGRAPHIC RETRIEVAL SYSTEMS; PROBLEM SOLVING;

EID: 0036462146     PISSN: 09268782     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1021540705916     Document Type: Article
Times cited : (35)

References (123)
  • 3
    • 84923749398 scopus 로고    scopus 로고
    • ACEDB Documentation Library
    • ACEDB Documentation Library, http://genome.cornell.edu/acedocs/.
  • 5
    • 84923749397 scopus 로고    scopus 로고
    • ASN.1 Standard. Web Site. http://asn1.elibel.tm.fr.
  • 7
    • 0031877016 scopus 로고    scopus 로고
    • Combining evidence using P-values: Application to sequence homology searches
    • T.L. Bailey and M. Gribskov, "Combining evidence using P-values: Application to sequence homology searches," Bioinformatics, vol. 14, pp. 48-54, 1998.
    • (1998) Bioinformatics , vol.14 , pp. 48-54
    • Bailey, T.L.1    Gribskov, M.2
  • 8
    • 0033957834 scopus 로고    scopus 로고
    • The SWISS-PROT database and its supplement TrEMBL in 2000
    • A. Bairoch and R. Apweiler, "The SWISS-PROT database and its supplement TrEMBL in 2000," Nucleic Acids Research, vol. 28, no. 1, pp. 45-48, 2000.
    • (2000) Nucleic Acids Research , vol.28 , Issue.1 , pp. 45-48
    • Bairoch, A.1    Apweiler, R.2
  • 16
    • 0028838717 scopus 로고
    • Threading a database of protein cores
    • S.H. Bryant, J.-F. Gibrat, and T. Madej, "Threading a database of protein cores," Proteins, vol. 23, pp. 356-369, 1995.
    • (1995) Proteins , vol.23 , pp. 356-369
    • Bryant, S.H.1    Gibrat, J.-F.2    Madej, T.3
  • 18
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structures in human genomic DNA
    • C. Burge and S. Karlin, "Prediction of complete gene structures in human genomic DNA," Journal of Molecular Biology, vol. 268, pp. 78-94, 1997.
    • (1997) Journal of Molecular Biology , vol.268 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 21
    • 0029343850 scopus 로고
    • An overview of the object protocol model (OPM) and the OPM data management tools
    • I.-M. Chen and V. Markowitz, "An overview of the object protocol model (OPM) and the OPM data management tools," Information Systems, vol. 20, no. 5, pp. 393-418, 1995.
    • (1995) Information Systems , vol.20 , Issue.5 , pp. 393-418
    • Chen, I.-M.1    Markowitz, V.2
  • 22
    • 84923724105 scopus 로고    scopus 로고
    • Chime Homepage: http://www.mdlchime.com/chime/.
    • Chime Homepage
  • 23
    • 0003213919 scopus 로고    scopus 로고
    • XML path language (XPath) version 1.0
    • J. Clark and S. DeRose, "XML path language (XPath) Version 1.0," W3C Recommendation, 1999, http://www.w3.org/TR/xpath.
    • (1999) W3C Recommendation
    • Clark, J.1    DeRose, S.2
  • 25
  • 26
    • 84923758159 scopus 로고    scopus 로고
    • Statement before the Subcommittee on Science, Technology and Space Committee on Commerce, Science, and Transportation, U.S. Senate
    • M. Clutter, "Hearing on computational biology," Statement before the Subcommittee on Science, Technology and Space Committee on Commerce, Science, and Transportation, U.S. Senate, 1996. http://www.nsf.gov/od/lpa/congress/cluttes2.htm.
    • (1996) Hearing on Computational Biology
    • Clutter, M.1
  • 27
    • 34249753618 scopus 로고
    • Support-vector networks
    • C. Cortes and V. Vapnik, "Support-vector networks" Machine Learning, vol. 20, no. 3, pp. 273-297, 1995.
    • (1995) Machine Learning , vol.20 , Issue.3 , pp. 273-297
    • Cortes, C.1    Vapnik, V.2
  • 28
    • 0033106244 scopus 로고    scopus 로고
    • Evaluation and improvement of multiple sequence methods for protein secondary structure prediction
    • J.A. Cuff and G.J. Barton, "Evaluation and improvement of multiple sequence methods for protein secondary structure prediction," PROTEINS: Structure, Function and Genetics, vol. 34, pp. 508-519, 1999.
    • (1999) PROTEINS: Structure, Function and Genetics , vol.34 , pp. 508-519
    • Cuff, J.A.1    Barton, G.J.2
  • 32
    • 0035865948 scopus 로고    scopus 로고
    • Protein structural domains: Analysis of the 3Dee domains database
    • U. Dengler, A.S. Siddiqui, and G.J. Barton, "Protein structural domains: Analysis of the 3Dee domains database," Proteins, vol. 42, pp. 332-344, 2001.
    • (2001) Proteins , vol.42 , pp. 332-344
    • Dengler, U.1    Siddiqui, A.S.2    Barton, G.J.3
  • 34
    • 0024032386 scopus 로고
    • Model management and structured modeling: The role of an information resource dictionary system
    • D.R. Dolk, "Model management and structured modeling: The role of an information resource dictionary system," Communications of the ACM, vol. 31, no. 6, pp. 704-718, 1988.
    • (1988) Communications of the ACM , vol.31 , Issue.6 , pp. 704-718
    • Dolk, D.R.1
  • 36
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • S.R. Eddy, "Profile hidden Markov models," Bioinformatics, vol. 14, pp. 755-763, 1998.
    • (1998) Bioinformatics , vol.14 , pp. 755-763
    • Eddy, S.R.1
  • 38
    • 0029967362 scopus 로고    scopus 로고
    • SRS: Information retrieval system for molecular biology data banks
    • T. Etzold, A. Ulyanow, and P. Argos, "SRS: Information retrieval system for molecular biology data banks," Methods in Enzymology, vol. 266, pp. 114-128, 1996.
    • (1996) Methods in Enzymology , vol.266 , pp. 114-128
    • Etzold, T.1    Ulyanow, A.2    Argos, P.3
  • 39
    • 0024062264 scopus 로고
    • Multiple aligned sequence editor (MASE)
    • D.V. Faulkner and J. Jurka, "Multiple aligned sequence editor (MASE)," Trends in Biochemical Sciences, vol. 13, no. 8, pp. 321-322, 1988.
    • (1988) Trends in Biochemical Sciences , vol.13 , Issue.8 , pp. 321-322
    • Faulkner, D.V.1    Jurka, J.2
  • 40
    • 0000122573 scopus 로고
    • PHYLIP - Phylogeny inference package (Version 3.2)
    • J. Felsenstein, "PHYLIP - Phylogeny inference package (Version 3.2)" Cladistics, vol. 5, pp. 164-166, 1989.
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 44
    • 84923735423 scopus 로고    scopus 로고
    • GenBank Growth: http://www.ncbi.nlm.nih.gov/Genbank/genbankstats.html.
    • GenBank Growth
  • 46
    • 0032906118 scopus 로고    scopus 로고
    • Motif-based searching in TOPS protein topology databases
    • D.R. Gilbert, D.R. Westhead, N. Nagano, and J.M. Thornton, "Motif-based searching in TOPS protein topology databases," Bioinformatics, vol. 5, no. 4, pp. 317-326, 1999.
    • (1999) Bioinformatics , vol.5 , Issue.4 , pp. 317-326
    • Gilbert, D.R.1    Westhead, D.R.2    Nagano, N.3    Thornton, J.M.4
  • 47
    • 0031473847 scopus 로고    scopus 로고
    • SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling
    • N. Guex and M.C. Peitsch, "SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling," Electrophoresis, vol. 18, pp. 2714-2723, 1997.
    • (1997) Electrophoresis , vol.18 , pp. 2714-2723
    • Guex, N.1    Peitsch, M.C.2
  • 48
    • 84897676665 scopus 로고    scopus 로고
    • Data integration using self-maintainable views
    • Proceedings of the International Conference on Extending Database Technology (EDBT), Springer Verlag
    • A. Gupta, H.V. Jagadish, and I.S. Mumick, "Data integration using self-maintainable views," in Proceedings of the International Conference on Extending Database Technology (EDBT), LNCS, vol. 1057, Springer Verlag, 1996, pp. 140-144.
    • (1996) LNCS , vol.1057 , pp. 140-144
    • Gupta, A.1    Jagadish, H.V.2    Mumick, I.S.3
  • 49
    • 0027351056 scopus 로고
    • Efficient methods for multiple sequence alignment with guaranteed error bounds
    • D. Gusfield, "Efficient methods for multiple sequence alignment with guaranteed error bounds," Bulletin of Mathematical Biology, vol. 55, no. 141, p. 154, 1993.
    • (1993) Bulletin of Mathematical Biology , vol.55 , Issue.141 , pp. 154
    • Gusfield, D.1
  • 50
    • 0019612794 scopus 로고
    • Database description with SDM: A semantic database model
    • M. Hammer and D. McLeod, "Database description with SDM: A semantic database model," ACM Transactions on Database Systems, vol. 6, no. 3, 1981.
    • (1981) ACM Transactions on Database Systems , vol.6 , Issue.3
    • Hammer, M.1    McLeod, D.2
  • 51
    • 84923704147 scopus 로고    scopus 로고
    • HIV-MAP Homepage: http://hiv-web.lanl.gov/content/hiv-db/MAP/hivmap.html.
    • HIV-MAP Homepage
  • 53
    • 0027440362 scopus 로고
    • Protein structure comparison by alignment of distance matrices
    • L. Holm and C. Sander, "Protein structure comparison by alignment of distance matrices," Journal of Molecular Biology, vol. 233, pp. 123-138, 1993.
    • (1993) Journal of Molecular Biology , vol.233 , pp. 123-138
    • Holm, L.1    Sander, C.2
  • 55
    • 84923727557 scopus 로고    scopus 로고
    • Jalview Homepage: http://circinus.ebi.ac.uk: 6543/jalview/help.html.
    • Jalview Homepage
  • 57
    • 0035042776 scopus 로고    scopus 로고
    • A literature network of human genes for high-throughput analysis of gene expression
    • T.K. Jenssen, A. Laegreid, J. Komorowski, and E. Hovig, "A literature network of human genes for high-throughput analysis of gene expression," Nature Genetics, vol. 28, no. 1, pp. 21-28, 2001.
    • (2001) Nature Genetics , vol.28 , Issue.1 , pp. 21-28
    • Jenssen, T.K.1    Laegreid, A.2    Komorowski, J.3    Hovig, E.4
  • 58
    • 0033537993 scopus 로고    scopus 로고
    • GenTHREADER: An efficient and reliable protein fold recognition method for genomic sequences
    • D.T. Jones, "GenTHREADER: An efficient and reliable protein fold recognition method for genomic sequences," Journal of Molecular Biology, vol. 287, pp. 797-815, 1999.
    • (1999) Journal of Molecular Biology , vol.287 , pp. 797-815
    • Jones, D.T.1
  • 59
    • 0033578684 scopus 로고    scopus 로고
    • Protein secondary structure prediction based on position-specific scoring matrices
    • D.T. Jones, "Protein secondary structure prediction based on position-specific scoring matrices," Journal of Molecular Biology, vol. 292, pp. 195-202, 1999.
    • (1999) Journal of Molecular Biology , vol.292 , pp. 195-202
    • Jones, D.T.1
  • 60
    • 0028211273 scopus 로고
    • A model recognition approach to the prediction of all-helical membran protein structure and topology
    • D.T. Jones, W.R. Taylor, and J.R. Thornton, "A model recognition approach to the prediction of all-helical membran protein structure and topology," Biochemestry, vol. 33, pp. 3038-3049, 1994.
    • (1994) Biochemestry , vol.33 , pp. 3038-3049
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.R.3
  • 61
    • 0029448178 scopus 로고
    • A strategy for database interoperation
    • P. Karp, "A strategy for database interoperation," Journal of Computational Biology, vol. 2, no. 4, pp. 573-586, 1995.
    • (1995) Journal of Computational Biology , vol.2 , Issue.4 , pp. 573-586
    • Karp, P.1
  • 62
    • 0025334980 scopus 로고
    • Improvements in protein secondary structure prediction by an enhanced neural network
    • D.G. Kneller, F.E. Cohen, and R. Langridge, "Improvements in protein secondary structure prediction by an enhanced neural network," Journal of Molecular Biology, vol. 214, pp. 171-182, 1990.
    • (1990) Journal of Molecular Biology , vol.214 , pp. 171-182
    • Kneller, D.G.1    Cohen, F.E.2    Langridge, R.3
  • 65
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
    • A. Krogh, B. Larsson, G. von Heijne, and E.L. Sonnhammer, "Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes," Journal of Molecular Biology, vol. 305, no. 3, pp. 567-580, 2001.
    • (2001) Journal of Molecular Biology , vol.305 , Issue.3 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    Von Heijne, G.3    Sonnhammer, E.L.4
  • 66
    • 0020475449 scopus 로고
    • A simple method for displaying the hydropathic character of a protein
    • J. Kyte and R.F. Doolittle, "A simple method for displaying the hydropathic character of a protein," Journal of Molecular Biology, vol. 157, no. 1, pp. 105-132, 1982.
    • (1982) Journal of Molecular Biology , vol.157 , Issue.1 , pp. 105-132
    • Kyte, J.1    Doolittle, R.F.2
  • 68
    • 0032076308 scopus 로고    scopus 로고
    • Unified access to mutation databases
    • H. Lehväslaiho, M. Ashburner, and T. Etzotd, "Unified access to mutation databases," Trends in Genetics, vol. 14, no. 5, pp. 205-206, 1998.
    • (1998) Trends in Genetics , vol.14 , Issue.5 , pp. 205-206
    • Lehväslaiho, H.1    Ashburner, M.2    Etzotd, T.3
  • 70
    • 0031406438 scopus 로고    scopus 로고
    • Protein distance constraints predicted by neural networks and probability density functions
    • O. Lund, K. Frimand, J. Gorodkin, H. Bohr, J. Bohr, J. Hansen, and S. Brunak, "Protein distance constraints predicted by neural networks and probability density functions," Protein Engineering, vol. 10, no. 11, pp. 1241-1248, 1997.
    • (1997) Protein Engineering , vol.10 , Issue.11 , pp. 1241-1248
    • Lund, O.1    Frimand, K.2    Gorodkin, J.3    Bohr, H.4    Bohr, J.5    Hansen, J.6    Brunak, S.7
  • 79
  • 80
    • 0014757386 scopus 로고
    • A general method applicable to the search for similarities in the amino acid sequence of two proteins
    • S.B. Needleman and C.D. Wunsch, "A general method applicable to the search for similarities in the amino acid sequence of two proteins," Journal of Molecular Biology, vol. 48, pp. 443-453, 1970.
    • (1970) Journal of Molecular Biology , vol.48 , pp. 443-453
    • Needleman, S.B.1    Wunsch, C.D.2
  • 81
    • 84923730659 scopus 로고    scopus 로고
    • Patscan Homepage: http://www-unix.mcs.anl.gov/compbio/PatScan/HTML/patscan.html.
    • Patscan Homepage
  • 83
    • 0030053370 scopus 로고    scopus 로고
    • ProMod and swiss-model: Internet-based tools for automated comparative protein modelling
    • M.C. Peitsch, "ProMod and swiss-model: Internet-based tools for automated comparative protein modelling," Biochemical Society Transactions, vol. 24, pp. 274-279, 1996.
    • (1996) Biochemical Society Transactions , vol.24 , pp. 274-279
    • Peitsch, M.C.1
  • 84
    • 0343920737 scopus 로고    scopus 로고
    • EMGLib: The enhanced microbial genomes library (Update 2000)
    • G. Perrière, P. Bessières, and B. Labedan, "EMGLib: The enhanced microbial genomes library (Update 2000)," Nucleic Acids Research, vol. 28, no. 1, pp. 68-71, 2000.
    • (2000) Nucleic Acids Research , vol.28 , Issue.1 , pp. 68-71
    • Perrière, G.1    Bessières, P.2    Labedan, B.3
  • 85
    • 84923727847 scopus 로고    scopus 로고
    • Predator Homepage: http://www.embl-heidelberg.de/argos/predator/predator_info.html.
    • Predator Homepage
  • 86
    • 0025831356 scopus 로고
    • Signal Scan: A computer program that scans DNA sequences for eukaryotic transcriptional elments
    • D.S. Prestridge, "SIGNAL SCAN: A computer program that scans DNA sequences for eukaryotic transcriptional elments," CABIOS, vol. 7, pp. 203-206, 1991.
    • (1991) CABIOS , vol.7 , pp. 203-206
    • Prestridge, D.S.1
  • 87
    • 84923722197 scopus 로고    scopus 로고
    • ProFit Homepage: http://www.bioinf.org.uk/software/.
    • ProFit Homepage
  • 88
    • 0033671178 scopus 로고    scopus 로고
    • TRITON: In Silico construction of protein mutants and prediction of their activities
    • M. Prokop, J. Damborsky, and J. Koca, "TRITON: In Silico construction of protein mutants and prediction of their activities," Bioinformatics, vol. 16, pp. 845-846, 2000.
    • (2000) Bioinformatics , vol.16 , pp. 845-846
    • Prokop, M.1    Damborsky, J.2    Koca, J.3
  • 89
  • 90
    • 84923749396 scopus 로고    scopus 로고
    • Protein Structure Prediction Center: http://predictioncenter.llnl.gov/.
  • 91
    • 84872267226 scopus 로고    scopus 로고
    • PubMed Database: http://www.ncbi.nlm.nih.gov/PubMed/.
    • PubMed Database
  • 92
    • 84923714660 scopus 로고    scopus 로고
    • Readseq Homepage: http://www.nih.go.jp/%7Ejun/cgi-bin/readseq.pl.
    • Readseq Homepage
  • 93
    • 0013425150 scopus 로고
    • Knowledge bases and computational biology
    • N. Mars (Ed.), IOS Press
    • F. Rechenmann, "Knowledge bases and computational biology," in Towards Very Large Knowledge Bases, N. Mars (Ed.), IOS Press, 1995, pp. 1-12.
    • (1995) Towards Very Large Knowledge Bases , pp. 1-12
    • Rechenmann, F.1
  • 94
    • 0037045398 scopus 로고    scopus 로고
    • ORF-FINDER: A vector for high-throughput gene identification
    • I.T. Rombel, K.F. Sykes, S. Rayner, and S.A. Johnston, "ORF-FINDER: A vector for high-throughput gene identification," Gene, vol. 282, nos. 1/2, pp. 33-41, 2002.
    • (2002) Gene , vol.282 , Issue.1-2 , pp. 33-41
    • Rombel, I.T.1    Sykes, K.F.2    Rayner, S.3    Johnston, S.A.4
  • 95
    • 0035782925 scopus 로고    scopus 로고
    • Review: Protein secondary structure prediction continues to rise
    • B. Rost, "Review: Protein secondary structure prediction continues to rise," Journal of Structural Biology, vol. 134, nos. 2/3, pp. 204-218, 2001.
    • (2001) Journal of Structural Biology , vol.134 , Issue.2-3 , pp. 204-218
    • Rost, B.1
  • 96
    • 0027291015 scopus 로고
    • Prediction of protein secondary structure at better than 70% accuracy
    • B. Rost and C. Sander, "Prediction of protein secondary structure at better than 70% accuracy," Journal of Molecular Biology, vol. 232, pp. 584-599, 1993.
    • (1993) Journal of Molecular Biology , vol.232 , pp. 584-599
    • Rost, B.1    Sander, C.2
  • 97
    • 84923726867 scopus 로고    scopus 로고
    • RPFOLD Homepage: http://www.imtech.res.in/raghava/rpfold/.
    • RPFOLD Homepage
  • 98
    • 0001504281 scopus 로고    scopus 로고
    • Adding conflict resolution features to a query language for database federations
    • K.-U. Sattler, S. Conrad, and G. Saake, "Adding conflict resolution features to a query language for database federations," Australian Journal of Information Systems, vol. 8, no. 1, pp. 116-125, 2000.
    • (2000) Australian Journal of Information Systems , vol.8 , Issue.1 , pp. 116-125
    • Sattler, K.-U.1    Conrad, S.2    Saake, G.3
  • 101
    • 84923758839 scopus 로고    scopus 로고
    • SFgate Homepage:http://ls6-www.informatik.uni-dortmund.de/ir/projects/SFgate/#intro.
    • SFgate Homepage
  • 102
    • 0025489261 scopus 로고
    • Federated database systems for managing distributed, heterogeneous, and automated databases
    • A.P. Sheth and J.A. Larson, "Federated database systems for managing distributed, heterogeneous, and automated databases," ACM Computing Surveys, vol. 22, no. 3, pp. 183-196, 1990.
    • (1990) ACM Computing Surveys , vol.22 , Issue.3 , pp. 183-196
    • Sheth, A.P.1    Larson, J.A.2
  • 103
    • 0035967880 scopus 로고    scopus 로고
    • FUGUE: Sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties
    • J. Shi, T.L. Blundell, and K. Mizuguchi, "FUGUE: Sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties," Journal of Molecular Biology, vol. 310, pp. 243-257, 2001.
    • (2001) Journal of Molecular Biology , vol.310 , pp. 243-257
    • Shi, J.1    Blundell, T.L.2    Mizuguchi, K.3
  • 104
    • 0035102149 scopus 로고    scopus 로고
    • 3Dee: A database of protein structural domains
    • A.S. Siddiqui, U. Dengler, and G.J. Barton, "3Dee: A database of protein structural domains," Bioinformatics, vol. 17, pp. 200-201, 2001.
    • (2001) Bioinformatics , vol.17 , pp. 200-201
    • Siddiqui, A.S.1    Dengler, U.2    Barton, G.J.3
  • 105
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • T.F. Smith and M.S. Waterman, "Identification of common molecular subsequences," Journal of Molecular Biology, vol. 147, pp. 195-197, 1981.
    • (1981) Journal of Molecular Biology , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 106
    • 0030013766 scopus 로고    scopus 로고
    • BCM search launcher-an integrated interface to molecular biology data base search and analysis services available on the world wide web
    • R.F. Smith, B.A. Wiese, M.K. Wojzynski, D.B. Davison, and K.C. Worley, "BCM search launcher-an integrated interface to molecular biology data base search and analysis services available on the world wide web," Genome Research, vol. 6, no. 5, pp. 454-462, 1996.
    • (1996) Genome Research , vol.6 , Issue.5 , pp. 454-462
    • Smith, R.F.1    Wiese, B.A.2    Wojzynski, M.K.3    Davison, D.B.4    Worley, K.C.5
  • 107
    • 0002600501 scopus 로고
    • Model independent assertions for integration of heterogeneous schemas
    • S. Spaccapietra, C. Parent, and Y. Dupont, "Model independent assertions for integration of heterogeneous schemas," VLDB Journal, vol. 1, no. 1, pp. 81-126, 1992.
    • (1992) VLDB Journal , vol.1 , Issue.1 , pp. 81-126
    • Spaccapietra, S.1    Parent, C.2    Dupont, Y.3
  • 108
    • 0013332984 scopus 로고    scopus 로고
    • /srs6/doc/srsuser.pdf
    • SRS User Guide, 2000, /srs6/doc/srsuser.pdf.
    • (2000) SRS User Guide
  • 109
    • 0033957471 scopus 로고    scopus 로고
    • The histone database: A comprehensive WWW resource for histones and histone fold-containing proteins
    • S.A. Sullivan, L. Aravind, I. Makalowska, A.D. Baxevanis, and D. Landsman, "The histone database: A comprehensive WWW resource for histones and histone fold-containing proteins," Nucleic Acids Research, vol. 28, no. 1, pp. 320-322, 2000.
    • (2000) Nucleic Acids Research , vol.28 , Issue.1 , pp. 320-322
    • Sullivan, S.A.1    Aravind, L.2    Makalowska, I.3    Baxevanis, A.D.4    Landsman, D.5
  • 110
    • 0021112868 scopus 로고
    • Correlation of sequence hydrophobicities measures similarity in three-dimensional protein structure
    • R.M. Sweet and D. Eisenberg, "Correlation of sequence hydrophobicities measures similarity in three-dimensional protein structure," Journal of Molecular Biology, vol. 171, no. 4, pp. 479-488, 1983.
    • (1983) Journal of Molecular Biology , vol.171 , Issue.4 , pp. 479-488
    • Sweet, R.M.1    Eisenberg, D.2
  • 111
    • 0033957560 scopus 로고    scopus 로고
    • DNA data bank of Japan (DDBJ) in collaboration with mass sequencing teams
    • Y. Tateno, S. Miyazaki, M. Ota, H. Sugawara, and T. Gojobori, "DNA data bank of Japan (DDBJ) in collaboration with mass sequencing teams," Nucleic Acids Research, vol. 28, no. 1, pp. 24-26, 2000.
    • (2000) Nucleic Acids Research , vol.28 , Issue.1 , pp. 24-26
    • Tateno, Y.1    Miyazaki, S.2    Ota, M.3    Sugawara, H.4    Gojobori, T.5
  • 112
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • J.D. Thompson, D.G. Higgins, and T.J. Gibson, "CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice," Nucleic Acids Research, vol. 22, pp. 4673-4680, 1994.
    • (1994) Nucleic Acids Research , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 116
    • 0026716643 scopus 로고
    • Membrane protein structure prediction: Hydrophobicity analysis and the 'positive inside' rule
    • G. von Heijne, "Membrane protein structure prediction: Hydrophobicity analysis and the 'Positive Inside' rule," Journal of Molecular Biology, vol. 225, pp. 487-494, 1992.
    • (1992) Journal of Molecular Biology , vol.225 , pp. 487-494
    • Von Heijne, G.1
  • 117
    • 0028922586 scopus 로고
    • LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions
    • A.C. Wallace, R.A. Laskowski, and J.M. Thornton, "LIGPLOT: A program to generate schematic diagrams of protein-ligand interactions," Protein Engineering, vol. 8, pp. 127-134, 1995.
    • (1995) Protein Engineering , vol.8 , pp. 127-134
    • Wallace, A.C.1    Laskowski, R.A.2    Thornton, J.M.3
  • 119
    • 84923738328 scopus 로고    scopus 로고
    • Wise2 Homepage: http://www.sanger.ac.uk/Software/Wise2/.
    • Wise2 Homepage
  • 120
    • 84885687068 scopus 로고    scopus 로고
    • XEMBL Project: http://www.ebi.ac.uk/xembl/.
    • XEMBL Project
  • 121
    • 0343238236 scopus 로고    scopus 로고
    • Storing biological sequence databases in relational form
    • G. Xie, R. DeMarco, R. Blevins, and Y. Wang, "Storing biological sequence databases in relational form," Bioinformatics, vol. 16, no. 2, pp. 288-289, 2000.
    • (2000) Bioinformatics , vol.16 , Issue.2 , pp. 288-289
    • Xie, G.1    DeMarco, R.2    Blevins, R.3    Wang, Y.4
  • 123
    • 0013420315 scopus 로고    scopus 로고
    • Protein structure prediction
    • T. Lengauer (Ed.): Basic Technologies, Wiley-VCH.
    • R. Zimmer and T. Lengauer, "Protein structure prediction," in Bioinformatics - From Genomes to Drugs, T. Lengauer (Ed.), Vol. 1: Basic Technologies, Wiley-VCH., 2002.
    • (2002) Bioinformatics - From Genomes to Drugs , vol.1
    • Zimmer, R.1    Lengauer, T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.