Measuring conservation of contiguous sets of autosomal markers on bovine and porcine genomes in relation to the map of the human genome

Genome

Volumn 45, Issue 4, 2002, Pages 769-776

  Jiang, Zhihua ^a   Melville, Jenna S ^a   Cao, Honghe ^a   Kumar, Sudhir ^a   Filipski, Alan ^a   Verrinder Gibbins, Ann M ^a  

^a UNIVERSITY OF GUELPH   (Canada)

Author keywords

Cattle; Comparative mapping; CSAM; Human; Orthologous genes; Pig

Indexed keywords

ANIMALS; CATTLE; CHROMOSOME MAPPING; GENETIC MARKERS; GENOME, HUMAN; HUMANS; SWINE; SYNTENY;

BOS TAURUS; BOVINAE; MAMMALIA; SUIDAE; SUS SCROFA;

EID: 0036434941     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/g02-038     Document Type: Article

References (42)

1. Adams, M.D., Kelley, J.M., Gocayne, J.D., Dutonick, M., Polymeropoulos, M.H., et al. 1991. Complementary DNA sequencing: Expressed sequence tags and human genome project. Science (Washington, D.C.), 252: 1651-1656.
2. Andersson, L., Archibald, A., Ashburner, M., Audin, S., Barendse, W., et al. 1996. Comparative genome organization of vertebrates. The first international workshop on comparative genome organization. Mamm. Genome, 7: 717-734.
3. Archibald, A.L., Haley, C.S., Brown, J.F., Copperwhite, S., McQueen, H.A., et al. 1995. The PiGMaP consortium linkage map of the pig (Sus scrofa). Mamm. Genome, 6: 157-175.
4. Band, M.R., Larson, J.H., Rebeiz, M., Green, C.A., Heyen, D.W., Donovan, J., Windish, R., Steining, C., Mahyuddin, P., Womack, J.E., and Lewin, H.A. 2000. An ordered comparative map of the cattle and human genomes. Genome Res. 10: 1359-1368.
5. Butler, D., and Smaglik, P. 2000. Draft data leave geneticists with a mountain still to climb. Nature (London), 405: 984-985.
6. Chowdhary, B.P., Fronicke, L., Gustavsson, I., and Scherthan, H. 1996. Comparative analysis of the cattle and human genomes: Detection of ZOO-FISH and gene mapping-based chromosomal homologies. Mamm. Genome, 7: 297-302.
7. Chowdhary, B.P., Raudsepp, T., Fronicke, L., and Scherthan, H. 1998. Emerging patterns of comparative genome organization in some mammalian species as revealed by Zoo-FISH. Genome Res. 8: 577-89.
8. Eggen, A., and Fries, R. 1995. An integrated cytogenetic and meiotic map of the bovine genome. Anim. Genet. 26: 215-236.
9. Eppig, J.T. 1996. Comparative maps: Adding pieces to the mammalian jigsaw puzzle. Curr. Opin. Genet. Dev. 6: 723-730.
10. Eppig, J.T., and Nadeau, J.H. 1995. Comparative maps: The mammalian jigsaw puzzle. Curr. Opin. Genet. Dev. 5: 709-716.
11. Fridolfsson, A.K., Hori, T., Wintero, A.K., Fredholm, M., Yerle, M., Robic, A., Andersson, L., and Ellegren, H. 1997. Expansion of the pig comparative map by expressed sequence tags (EST) mapping. Mamm. Genome, 8: 907-912.
12. Goureau, A., Yerle, M., Schmitz, A., Riquet, J., Milan, D., Pinton, P., Frelat, G., and Gellin, J. 1996. Human and porcine correspondence of chromosome segments using bidirectional chromosome painting. Genomics, 36: 252-262.
13. Hawken, R.J., Murtaugh, J., Flickinger, G.H., Yerle, M., Robic, A., Milan, D., Gellin, J., Beattie, C.W., Schook, L.B., and Alexander, L.J. 1999. A first-generation porcine whole-genome radiation hybrid map. Mamm. Genome, 10: 824-30.
14. International Human Genome Sequencing Consortium. 2001. Initial sequencing and analysis of the human genome. Nature (London), 409: 860-921.
15. Jiang, Z.H., Priat, C., and Galibert, F. 1998. Traced orthologous amplified sequence tags (TOASTs) and mammalian comparative maps. Mamm. Genome, 9: 577-587.
16. Jiang, Z.H., He, H., Hamasima, N., Suzuki, H., and Verrinder Gibbins, A.M. 2002. Comparative mapping of Homo sapiens chromosome 4 (HSA4) and Sus scrofa chromosome 8 (SSC8) using orthologous genes representing different cytogenetic bands as landmarks. Genome, 45: 147-156.
17. Johnson, N.L., and Kotz, S. 1969. Distributions in Statistics: Discrete Distributions. Houghton Mifflin, Boston, Mass.
18. Karnuah, A.B., Uenishi, H., Kiuchi, S., Kojima, M., Onishi, A., Yasue, H., and Mitsuhashi, T. 2001. Assignment of 64 genes expressed in 28-day-old pig embryo to radiation hybrid map. Mamm. Genome, 12: 518-523.
19. Kumar, S., and Hedges, S.B. 1998. A molecular timescale for vertebrate evolution. Nature (London), 392: 917-920.
20. Kumar, S., Gadagkar, S.R., Filipski, A., and Gu, X. 2001. Determination of the number of conserved chromosomal segments between species. Genetics, 157: 1387-1395.
21. Lahbib-Mansais, Y., Leroux, S., Milan, D., Yerle, M., Robic, A., Jiang, Z., Andre, C., and Gellin, J. 2000. Comparative mapping between humans and pigs: Localization of 58 anchorage markers (TOASTs) by use of porcine somatic cell and radiation hybrid panels. Mamm. Genome, 11: 1098-106.
22. Lyons, L.A., Laughlin, T.F., Copeland, N.G., Jenkins, N.A., Womack, J.E., and O'Brien, S.J. 1997. Comparative anchor tagged sequences (CATS) for integrative mapping of mammalian genomes. Nat. Genet. 15: 47-56.
23. Ma, R.Z., van Eijk, M.J., Beever, J.E., Guerin, G., Mummery, C.L., and Lewin, H.A. 1998. Comparative analysis of 82 expressed sequence tags from a cattle ovary cDNA library. Mamm. Genome, 9: 545-549.
24. Marklund, L., Johansson Moller, M., Hoyheim, B., Davies, W., Fredholm, M., Juneja, R.K., Mariani, P., Coppieters, W., Ellegren, H., and Andersson, L. 1996. A comprehensive linkage map of the pig based on a wild pig - Large White intercross. Anim. Genet. 27: 255-69.
25. Melville, J.S., Jiang, Z.H., and Verrinder Gibbins, A.M. 2001. Cytogenetic banding block counterparts between porcine and human genomes based on 639 orthologous genes mapped in both species. Proceedings of 12th North America Colloquium on Animal Cytogentics and Gene Mapping, Davis, Calif. p. 38.
26. Nadeau, J.H., and Sankoff, D. 1998. Counting on comparative maps. Trends Genet. 14: 495-501.
27. Nadeau, J.H., and Taylor, B.A. 1984. Lengths of chromosomal segments conserved since divergence of man and mouse. Proc. Natl. Acad. Sci. U.S.A. 81: 814-818.
28. O'Brien, S.J., Womack, J.E., Lyons, L.A., Moore, K.J., Jenkins, N.A., and Copeland, N.G. 1993. Anchored reference loci for comparative genome mapping in mammals. Nat. Genet. 3: 103-12.
29. O'Brien, S.J., Eisenberg, J.F., Miyamoto, M., Hedges, S.B., Kumar, S., et al. 1999. Genome maps 10. Comparative genomics. Mammalian radiations. Wall chart. Science (Washington, D.C.), 286: 463-478.
30. Ozawa, A., Band, M.R., Larson, J.H., Donovan, J., Green, C.A., Womack, J.E., and Lewin, H.A. 2000. Comparative organization of cattle chromosome 5 revealed by comparative mapping by annotation and sequence similarity and radiation hybrid mapping. Proc. Natl. Acad. Sci. U.S.A. 97: 4150-4155.
31. Pinton, P., Schibler, L., Cribiu, E., Gellin, J., and Yerle, M. 2000. Localization of 113 anchor loci in pigs: Improvement of the comparative map for humans, pigs, and goats. Mamm. Genome, 11: 306-315.
32. Rettenberger, G., Klett, C., Zechner, U., Kunz, J., Vogel, W., and Hameister, H. 1995. Visualization of the conservation of synteny between humans and pigs by heterologous chromosomal painting. Genomics, 26: 372-378.
33. Rohrer, G.A., et al. 1996. A comprehensive map of the porcine genome. Genome Res. 6: 371-391.
34. Sankoff, D., and Nadeau, J.H. 1996. Conserved synteny as a measure of genomic distance. Discrete Appl. Math. 71: 247-257.
35. Smith, T.P., Fahrenkrug, S.C., Rohrer, G.A., Simmen, F.A., Rexroad, C.E., and Keele, J.W. 2001. Mapping of expressed sequence tags from a porcine early embryonic cDNA library. Anim. Genet. 32: 66-72.
36. Solinas-Toldo, S., Lengauer, C., and Fries, R. 1995. Comparative genome map of human and cattle. Genomics, 27: 489-496.
37. Tosser-Klopp, G., Bonnet, A., Yerle, M., and Hatey, F. 2001. Functional study and regional mapping of 44 hormono-regulated genes isolated from a porcine granulosa cell library. Genet. Sel.Evol. 33: 69-87.
38. Venta, P.J., Brouillette, J.A., Yuzbasiyan-Gurkan, V., and Brewer, G.J. 1996. Gene-specific universal mammalian sequence-tagged sites: Application to the canine genome. Biochem. Genet. 34: 321-341.
39. Venter, J.C., et al. 2001. The sequence of the human genome. Science (Washington, D.C.), 291: 1304-1351.
40. Womack, J.E., and Kata, S.R. 1995. Bovine genome mapping: Evolutionary inference and the power of comparative genomics. Curr. Opin. Genet. Dev. 5: 725-733.
41. Yerle, M., Lahbid-Mansais, Y., Mellink, C., Goureau, A., Pinton, P., et al. 1995. The PiGMaP consortium cytogenetic map of the domestic pig (Sus scrofa domestica). Mamm. Genome, 6: 176-86.
42. Yerle, M., Lahbib-Mansais, Y., Pinton, P., Robic, A., Goureau, A., Milan, D., and Gellin, J. 1997. The cytogenetic map of the domestic pig. Mamm. Genome, 8: 592-607.