Epigenetics by DNA methylation for development of normal and cloned animals

Differentiation

Volumn 69, Issue 4-5, 2002, Pages 162-166

  Shiota, Kunio ^a   Yanagimachi, Ryuzo ^b  

^a UNIVERSITY OF TOKYO   (Japan)

^b UNIVERSITY OF HAWAII   (United States)

Author keywords

Clone; Development; DNA methylation; Epigenetics; Mammal

Indexed keywords

CELL NUCLEUS TRANSPLANTATION; CLONING; DNA METHYLATION; DNA SEQUENCE; EPIGENETICS; GERM CELL; NONHUMAN; NOTE; PRIORITY JOURNAL; PROGENY; ALLELE; ANIMAL; ANIMAL DISEASE; ARTICLE; CPG ISLAND; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; HUMAN; METABOLISM; PROMOTER REGION; RISK FACTOR; TRANSGENIC ANIMAL;

ANIMALIA; MAMMALIA;

ALLELES; ANIMALS; ANIMALS, GENETICALLY MODIFIED; CLONING, ORGANISM; CPG ISLANDS; DNA METHYLATION; GENE EXPRESSION REGULATION; HUMANS; PROMOTER REGIONS (GENETICS); RISK FACTORS;

EID: 0036369438     PISSN: 03014681     EISSN: 14320436     Source Type: Journal    
DOI: 10.1046/j.1432-0436.2002.690406.x     Document Type: Note

References (42)

1. Benvenisty, N., Mencher, D., Meyuhas, O., Razin, A. and Reshef, L. (1985) Sequential changes in DNA methylation patterns of the rat phosphoenolpyruvate carboxykinase gene during development. Proc Natl Acad Sci USA 82:267-271.
2. Bornman, D.M., Mathew, S., Alsruhe, J., Herman, J.G. and Gabrielson, E. (2001) Methylation of the e-cadherin gene in bladder neoplasia and in normal urothelial epithelium from elderly individuals. Am J Pathol 159:831-835.
3. Boyes, J. and Bird, A. (1992) Repression of genes by DNA methylation depends on CpG density and promoter strength: evidence for involvement of a methyl-CpG binding protein. EMBO J 11:327-333.
4. Cho, J.H., Kimura, H., Minami, T., Ohgane, J., Hattori, N., Tanaka, S. and Shiota, K. (2001) DNA methylation regulates placental lactogen I gene expression. Endocrinology 142:3389-3396.
5. De Smet, C., Lurquin, C., Lethe, B., Martelange, V. and Boon, T. (1999) DNA methylation is the primary silencing mechanism for a set of germ line- and tumor-specific genes with a CpG-rich promoter. Mol Cell Biol 19:7327-7335.
6. Ferguson-Smith, A.C. and Surani, M.A. (2001) Imprinting and the epigenetic asymmetry between parental genomes. Science 293:1086-1089.
7. Gardiner-Garden, M. and Frommer, M. (1987) CpG islands in vertebrate genomes. J Mol Biol 196:261-282.
8. Gruenbaum, Y., Stein, R., Cedar, H. and Razin, A. (1981) Methylation of CpG sequences in eukaryotic DNA. FEBS Lett 124:67-71.
9. Hayashizaki, Y., Shibata, H., Hirotsune, S., Sugino, H., Okazaki, Y., Sasaki, N., Hirose, K., Imoto, H., Okuizumi, H., Muramatsu, M., et al. (1994) Identification of an imprinted U2af binding protein related sequence on mouse chromosome 11 using the RLGS method. Nat Genet 6:33-40.
10. Imamura, T., Ohgane, J., Ito, S., Ogawa, T., Hattori, N., Tanaka, S. and Shiota, K. (2001) CpG island of rat sphingosine kinase-1 gene: tissue-dependent DNA methylation status and multiple alternative exons. Genomics 76:117-125.
11. International Human Genome Sequencing Consortium (2001) Initial sequencing and analysis of the human genome. Nature 409:860-921.
12. Jones, P.A. and Laird, P.W. (1999) Cancer epigenetics comes of age. Nat Genet 21:163-167.
13. Kuramasu, A., Saito, H., Suzuki, S., Watanabe, T. and Ohtsu, H. (1998) Mast cell-/basophil-specific transcriptional regulation of human L-histidine decarboxylase gene by CpG methylation in the promoter region. J Biol Chem 273:31607-31614.
14. Lanza, R.P., Cibelli, J.B., Blackwell, C., Cristofalo, V.J., Francis, M.K., Baerlocher, G.M., Mak, J., Schertzer, M., Chavez, E.A., Sawyer, N., Lansdorp, P.M. and West, M.D. (2000) Extension of cell life-span and telomere length in animals cloned from senescent somatic cells. Science 288:665-669.
15. Li, E., Bestor, T.H. and Jaenisch, R. (1992) Targeted mutation of the DNA methyltransferase gene results in embryonic lethality. Cell 69:915-926.
16. Macleod, D., Ali, R.R. and Bird, A. (1998) An alternative promoter in the mouse major histocompatibility complex class II I-Abeta gene: implications for the origin of CpG islands. Mol Cell Biol 18:4433-4443.
17. Manes, C. and Menzel, P. (1981) Demethylation of CpG sites in DNA of early rabbit trophoblast. Nature 293:589-590.
18. McCormick, J.A., Lyons, V., Jacobson, M.D., Noble, J., Diorio, J., Nyirenda, M., Weaver, S., Ester, W., Yau, J.L., Meaney, M.J., Seckl, J.R. and Chapman, K.E. (2000) 5′-heterogeneity of glucocorticoid receptor messenger RNA is tissue specific: differential regulation of variant transcripts by early-life events. Mol Endocrinol 14:506-517.
19. Nan, X., Campoy, F.J. and Bird, A. (1997) MeCP2 is a transcriptional repressor with abundant binding sites in genomic chromatin. Cell 88:471-481.
20. Nan, X., Ng, H.H., Johnson, C.A., Laherty, C.D., Turner, B.M., Eisenman, R.N. and Bird, A. (1998) Transcriptional repression by the methyl-CpG-binding protein MeCP2 involves a histone deacetylase complex. Nature 393:386-389.
21. Newell-Price, J., King, P. and Clark, A.J. (2001) The CpG island promoter of the human proopiomelanocortin gene is methylated in nonexpressing normal tissue and tumors and represses expression. Mol Endocrinol 15:338-348.
22. Ng, H.H., Zhang, Y., Hendrich, B., Johnson, C.A., Turner, B.M., Erdjument-Bromage, H., Tempst, P., Reinberg, D. and Bird, A. (1999) MBD2 is a transcriptional repressor belonging to the MeCP1 histone deacetylase complex. Nat Genet 23:58-61.
23. Ngo, V., Gourdji, D. and Laverriere, J.N. (1996) Site-specific methylation of the rat prolactin and growth hormone promoters correlates with gene expression. Mol Cell Biol 16:3245-3254.
24. Ngo, V.M., Laverriere, J.N. and Gourdji, D. (1995) CpG methylation represses the activity of the rat prolactin promoter in rat GH3 pituitary cell lines. Mol Cell Endocrinol 108:95-105.
25. Ohgane, J., Aikawa, J., Ogura, A., Hattori, N., Ogawa, T. and Shiota, K. (1998) Analysis of CpG islands of trophoblast giant cells by restriction landmark genomic scanning. Dev Genet 22:132-140.
26. Ohgane, J., Wakayama, T., Kogo, Y., Senda, S., Hattori, N., Tanaka, S., Yanagimachi, R. and Shiota, K. (2001) DNA methylation variation in cloned mice. Genesis 30:45-50.
27. Okano, M., Bell, D.W., Haber, D.A. and Li, E. (1999) DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development. Cell 99:247-257.
28. Pao, M.M., Tsutsumi, M., Liang, G., Uzvolgyi, E., Gonzales, F.A. and Jones, P.A. (2001) The endothelin receptor B (EDNRB) promoter displays heterogeneous, site specific methylation patterns in normal and tumor cells. Hum Mol Genet 10:903-910.
29. Razin, A., Webb, C., Szyf, M., Yisraeli, J., Rosenthal, A., Naveh-Many, T., Sciaky-Gallili, N. and Cedar, H. (1984) Variations in DNA methylation during mouse cell differentiation in vivo and in vitro. Proc Natl Acad Sci USA 81:2275-2279.
30. Reik, W., Dean, W. and Walter, J. (2001) Epigenetic reprogramming in mammalian development. Science 293:1089-1093.
31. Rideout, W.M. 3rd, Eggan, K. and Jaenisch, R. (2001) Nuclear cloning and epigenic reprogramming of the genome. Science 293:1093-1098.
32. Riggs, A.D., Martienssen, R.A. and Russo, V.E.A. (1996) Introduction. In: Russo, V.E.A., Martienssen, R.A. and Riggs, A.D. (eds.) Epigenetic mechanisms of gene regulation. Cold Spring Harbor Laboratory Press, New York, pp 1-4.
33. Shemer, R., Birger, Y., Dean, W.L., Reik, W., Riggs, A.D. and Razin, A. (1996) Dynamic methylation adjustment and counting as part of imprinting mechanisms. Proc Natl Acad Sci USA 93:6371-6376.
34. Solter, D. (1988) Differential imprinting and expression of maternal and paternal genomes. Annu Rev Genet 22:127-146.
35. Solter, D. (2000) Mammalian cloning: advances and limitations. Nat Rev Genet 1:199-207.
36. Suzuki, Y., Tsunoda, T., Sese, J., Taira, H., Mizushima-Sugano, J., Hata, H., Ota, T., Isogai, T., Tanaka, T., Nakamura, Y., Suyama, A., Sakaki, Y., Morishita, S., Okubo, K. and Sugano, S. (2001) Identification and characterization of the potential promoter regions of 1031 kinds of human genes. Genome Res 11:677-684.
37. Szyf, M. (1996) The DNA methylation machinery as a target for anticancer therapy. Pharmacol Ther 70:1-37.
38. Tamashiro, K.L., Wakayama, T., Blanchard, R.J., Blanchard, D.C. and Yanagimachi, R. (2000) Postnatal growth and behavioral development of mice cloned from adult cumulus cells. Biol Reprod 63:328-334.
39. Tanaka, S., Oda, M., Toyoshima, Y., Wakayama, T., Tanaka, M., Yoshida, N., Hattori, N., Ohgane, J., Yanagimachi, R. and Shiota, K. (2001) Placentomegaly in cloned mice: Histological and gene expression analyses. Biol Reprod. Forthcoming.
40. Tate, P.H. and Bird, A.P. (1993) Effects of DNA methylation on DNA-binding proteins and gene expression. Curr Opin Genet Dev 3:226-231.
41. Wade, P.A., Gegonne, A., Jones, P.L., Ballestar, E., Aubry, F. and Wolffe, A.P. (1999) Mi-2 complex couples DNA methylation to chromatin remodelling and histone deacetylation. Nat Genet 23:62-66.
42. Wakayama, T. and Yanagimachi, R. (1999) Cloning of male mice from adult tail-tip cells. Nat Genet 22:127-128.