Analysis of protein homeostatic regulatory mechanisms in perturbed environments at steady state

Journal of Theoretical Biology

Volumn 215, Issue 2, 2002, Pages 151-167

  Sewell, Christopher ^a   Morgan, Jeffrey J ^a   Lindahl, Paul A ^a  

^a TEXAS A AND M UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

ARTICLE; CONCENTRATION RESPONSE; CONTROLLED STUDY; DIMERIZATION; ENVIRONMENT; ESCHERICHIA COLI; FEEDBACK SYSTEM; HOMEOSTASIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN DEGRADATION; PROTEIN EXPRESSION; PROTEIN SYNTHESIS; QUANTITATIVE ASSAY; REGULATORY MECHANISM; STEADY STATE;

ESCHERICHIA COLI;

EID: 0036346420     PISSN: 00225193     EISSN: None     Source Type: Journal    
DOI: 10.1006/jtbi.2001.2536     Document Type: Article

References (58)

1. Stabilization of discrete mRNA breakdown products in ams pnp rnb multiple mutants of Escherichia coli K-12
2. Modeling the regulation of bacterial genes producing proteins that strongly influence growth
3. Robustness in simple biochemical networks
4. Engineering stability in gene networks by autoregulation
5. Protein molecules as computational elements in living cells
6. Why do protein kinase cascades have more than one level?
7. Modeling gene expression with differential equations
8. Interconvertible enzyme cascades in cellular regulation
9. Combinatorial explosion in model gene networks
10. Tripping the switch fantastic: How a protein kinase cascade can convert graded inputs into switch-like outputs
11. How responses get more switch-like as you move down a protein kinase cascade
12. How regulated protein translocation can produce switch-like responses
13. Classification of biological networks by their qualitative dynamics
14. The logical analysis of continuous non-linear biochemical control networks
15. Sensitivity amplification in biochemical systems
16. Regulation by proteolysis: Energy-dependent proteases and their targets
17. Rules for coupled expression of regulator and effector genes in inducible circuits
18. Co-response analysis: A new experimental strategy for metabolic control analysis
19. Building the cellular puzzle - Control in multilevel reaction networks
20. Ultrasensitivity in the mitogen-activated protein kinase cascade
21. The significance of tetramerization in promoter recruitment by Stat5
22. Negative feedback and ultrasensitity can bring about oscillations in the mitogen-activated protein kinase cascades
23. Quantification of information transfer via cellular signal transduction pathways
24. Amplification and adaptation in regulatory and sensory systems
25. The organization of metabolic reaction networks: A signal oriented approach to cellular models
26. mRNA decay
27. Global analysis of the genetic network controlling a bacterial cell cycle
28. Metabolic networks: A signal-oriented approach to cellular models
29. Stochastic mechanisms in gene expression
30. Simulation of prokaryotic genetic circuits
31. It's a noisy business! Genetic regulation at the nanomolar scale
32. Circuit simulation of genetic networks
33. A mathematical framework for describing and analyzing gene regulatory networks
34. Mathematical description of the control of steady-states in metabolic systems
35. Regulation beyond the operon
36. Chemical composition of E. coli
37. Model assessment and refinement using strategies from biochemical systems theory: Application to metabolism in human red blood cells
38. Description and analysis of switchlike regulatory networks exemplified by a model of cellular iron homeostasis
39. Two types of zinc fingers are required for dimerization of the serendipity δ transcriptional activator
40. Recent developments in the theory of control and regulation of cellular processes
41. Demand theory of gene regulation. I. Quantitative development of the theory
42. Regulation through phosphorylation/dephosphorylation cascade systems
43. Protein phosphorylation as a regulatory device
44. Mathematical modeling of gene networks
45. Modeling transcriptional control in gene networks - Methods, recent results, and future directions
46. The modularity of biological regulatory networks
47. Boolean formalization of genetic control circuits
48. Regulatory networks as asynchronous automata: A logical description
49. Dynamical behavior of biological regulatory networks - I. Biological role of the feedback loops and practical use of the concept of the loop-characteristic state
50. The dynamics of feedback control circuits in biochemical pathways
51. On the relationship between genomic regulatory element organization and gene regulatory dynamics