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Journal of Molecular Biology

Volumn 316, Issue 4, 2002, Pages 903-918

Long-range correlations between DNA bending sites: Relation to the structure and dynamics of nucleosomes

(5) Audit, Benjamin a Vaillant, Cedric a Arneodo, Alain a D'Aubenton Carafa, Yves b Thermes, Claude b

a CENTRE DE RECHERCHE PAUL PASCAL (France)

b CENTRE DE GÉNÉTIQUE MOLÉCULAIRE (France)

Author keywords

Chromatin; Fractals; Long range correlations; Nucleosome positioning; Scale invariance

Indexed keywords

CURVED DNA; DINUCLEOTIDE; GENOMIC DNA; VIRUS DNA;

ARTICLE; BACTERIAL GENOME; CELL NUCLEUS; CONTROLLED STUDY; CORRELATION ANALYSIS; DNA REPLICATION; DNA SEQUENCE; DNA STRAND; EUKARYOTE; HOST; MICROSCOPE; NONHUMAN; NUCLEOSOME; OPTICS; POXVIRUS; PRIORITY JOURNAL; RETROVIRUS; RNA VIRUS; STRUCTURE ACTIVITY RELATION; UNINDEXED SEQUENCE; VACCINIA VIRUS; VIRUS GENOME;

BACTERIA (MICROORGANISMS); EUKARYOTA; RNA VIRUSES;

EID: 0036289102 PISSN: 00222836 EISSN: None Source Type: Journal
DOI: 10.1006/jmbi.2001.5363 Document Type: Article

Times cited : (95)

References (49)

1
- 1842411320
- Crystal structure of the nucleosome core particle at 2.8 Å resolution
- (1997) Nature , vol.389 , pp. 251-260
- Luger, K.¹ Mäder, A.W.² Richmond, R.K.³ Sargent, D.F.⁴ Richmond, T.J.⁵

2
- 0003903126
- Springer, New York
- (1989) Chromatin
- Van Holde, K.¹

3
- 0034727102
- RNA polymerase II elongation through chromatin
- (2000) Nature , vol.407 , pp. 471-475
- Orphanides, G.¹ Reinberg, D.²

4
- 0033813699
- Linker histone binding and displacement: Versatile mechanism for transcriptional regulation
- (2000) FASEB J. , vol.14 , pp. 1697-1704
- Zlatanova, J.¹ Caiafa, P.² Van Holde, K.³

5
- 0020261512
- A bent helix in kinetoplast DNA
- (1983) Cold Spring Harbor Symp. Quant. Biol. , vol.47 , pp. 279-283
- Marini, J.C.¹ Levene, S.D.² Crothers, D.M.³ Englund, P.T.⁴

6
- 0020695571
- Structural features of a phased nucleosome core particle
- (1983) Proc. Natl. Acad. Sci. USA , vol.80 , pp. 51-55
- Simpson, R.T.¹ Stafford, D.W.²

7
- 0021352793
- DNA bending and kinking
- (1984) Nature , vol.309 , pp. 312-313
- Widom, J.¹

8
- 0023657337
- The bending of DNA in nucleosomes and its wider implications
- (1987) Phil. Trans. Roy. Soc. Ser B , vol.317 , pp. 537-561
- Travers, A.A.¹ Klug, A.²

9
- 0022230224
- DNA bending and its relation to nucleosome positioning
- (1985) J. Mol. Biol. , vol.186 , pp. 773-790
- Drew, H.R.¹ Travers, A.A.²

10
- 0023001414
- Sequence periodicities in chicken nucleosome core DNA
- (1986) J. Mol. Biol. , vol.191 , pp. 659-675
- Satchwell, S.C.¹ Drew, H.R.² Travers, A.A.³

11
- 0028013477
- Periodicity of dinucleotides in nucleosomes derived from simian virus 40 chromatin
- (1994) J. Mol. Biol. , vol.235 , pp. 198-208
- Bina, M.¹

12
- 0028053165
- DNA sequence organization in chromatosomes
- (1994) J. Mol. Biol. , vol.235 , pp. 855-870
- Muyldermans, S.¹ Travers, A.A.²

13
- 0030595138
- Nucleosome DNA sequence pattern revealed by multiple alignment of experimentally mapped sequences
- (1996) J. Mol. Biol. , vol.262 , pp. 129-139
- Ioshikhes, I.¹ Bolshoy, A.² Derenshteyn, K.³ Borodovsky, M.⁴ Trifonov, E.N.⁵

14
- 0031564633
- Identification and characterization of genomic nucleosome-positioning sequences
- (1997) J. Mol. Biol. , vol.267 , pp. 807-817
- Widlund, H.R.¹ Cao, H.² Simonsson, S.³ Magnusson, E.⁴ Simonsson, T.⁵ Nielsen, P.E.⁶

15
- 0032891716
- 10-11 bp periodicities in complete genomes reflect protein structure and DNA folding
- (1999) Bioinformatics , vol.15 , pp. 187-193
- Herzel, H.¹ Weiss, O.² Trifonov, E.N.³

16
- 0033081336
- A signal encoded in vertebrate DNA that influences nucleosome positioning and alignment
- (1999) Nucl. Acids Res. , vol.27 , pp. 848-853
- Stein, A.¹ Bina, M.²

17
- 0039837085
- Sequence motifs and free energies of selected natural and non-natural nucleosome positioning DNA sequences
- (1999) J. Mol. Biol. , vol.288 , pp. 213-229
- Thaström, A.¹ Lowary, P.T.² Widlund, H.R.³ Cao, H.⁴ Kubista, M.⁵ Widom, J.⁶

18
- 0001415964
- The pitch of chromatin DNA is reflected in its nucleotide sequence
- (1980) Proc. Natl Acad. Sci. USA , vol.77 , pp. 3816-3820
- Trifonov, E.N.¹ Sussman, J.L.²

19
- 0001079085
- Artificial nucleosome positioning sequences
- (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 7418-7422
- Shrader, T.E.¹ Crothers, D.M.²

20
- 0029127002
- Rat growth hormone gene introns stimulate nucleosome alignment in vitro and in transgenic mice
- (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 7724-7728
- Liu, K.¹ Sandgren, E.P.² Palmiter, R.D.³ Stein, A.⁴

21
- 0031030691
- Nucleosome packaging and nucleosome positioning of genomic DNA
- (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 1183-1188
- Lowary, P.T.¹ Widom, J.²

22
- 0035847859
- Long-range correlations in genomic DNA: A signature of the nucleosomal structure
- (2001) Phys. Rev. Letters , vol.86 , pp. 2471-2474
- Audit, B.¹ Thermes, C.² Vaillant, C.³ D'Aubenton-Carafa, Y.⁴ Muzy, J.F.⁵ Arneodo, A.⁶

23
- 0041457581
- Wavelet based fractal analysis of DNA sequences
- (1996) Physica D , vol.96 , pp. 291-320
- Arneodo, A.¹ D'Aubenton-Carafa, Y.² Bacry, E.³ Graves, P.V.⁴ Muzy, J.-F.⁵ Thermes, C.⁶

24
- 77956890381
- Fractional differencing
- (1981) Biometrika , vol.68 , pp. 165-176
- Hosking, J.R.M.¹

25
- 0004263139
- Freeman & Co., San Francisco
- (1982) The Fractal Geometry of Nature
- Mandelbrot, B.B.¹

26
- 2142778260
- Sinauer Associates Inc. Publishers, Sunderland, MA
- (1990) Editor of Genetic Data Analysis, Methods for Discrete Population Genetic Data , pp. 237-240
- Weir, B.S.¹

27
- 0000255605
- Fractal landscapes in biological systems
- (1993) Fractals , vol.1 , pp. 283-301
- Stanley, H.E.¹ Buldyrev, S.V.² Goldberger, A.L.³ Havlin, S.⁴ Ossadnik, S.M.⁵ Peng, C.K.⁶ Simons, M.⁷

28
- 84956088098
- a spectrum in a noncoding DNA sequence
- (1992) Europhys. Letters , vol.17 , pp. 655-660
- Li, W.¹ Kaneko, K.²

29
- 0026585152
- Long-range correlations in nucleotide sequences
- (1992) Nature , vol.356 , pp. 168-170
- Peng, C.K.¹ Buldyrev, S.V.² Goldberger, A.L.³ Havlin, S.⁴ Sciortino, F.⁵ Simons, M.⁶ Stanley, H.E.⁷

30
- 0000204878
- Evolution of long-range fractal correlations and 1/f noise in DNA base sequences
- (1992) Phys. Rev. Letters , vol.68 , pp. 3805-3808
- Voss, R.F.¹

31
- 0027458843
- Patchiness and correlations in DNA sequences
- (1993) Science , vol.259 , pp. 677-680
- Karlin, S.¹ Brendel, V.²

32
- 0000236451
- Characterizing long-range correlations in DNA sequences from wavelet analysis
- (1995) Phys. Rev. Letters , vol.74 , pp. 3293-3296
- Arneodo, A.¹ Bacry, E.² Graves, P.V.³ Muzy, J.F.⁴

33
- 0024555760
- During latency, herpes simplex virus type 1 DNA is associated with nucleosomes in a chromatin structure
- (1989) J. Virol. , vol.63 , pp. 943-947
- Deshmane, S.L.¹ Fraser, N.W.²

34
- 0020523882
- Chromatin-like structure of adeno-associated virus DNA in infected cells
- (1983) J. Virol. , vol.48 , pp. 79-87
- Marcus-Sekura, C.J.¹ Carter, B.J.²

35
- 0034011209
- Structure and functional relationships of archaeal and eukaryal histones and nucleosomes
- (2000) Arch. Microbiol. , vol.173 , pp. 165-169
- Sandman, K.¹ Reeve, J.N.²

36
- 0028624664
- Bending and curvature calculations in B-DNA
- (1994) Nucl. Acids Res. , vol.22 , pp. 5497-5503
- Goodsell, D.S.¹ Dickerson, R.E.²

37
- 0032168436
- Rod models of DNA: Sequence-dependent anisotropic elastic modelling of local bending phenomena
- (1998) Trends Biochem. Sci. , vol.23 , pp. 341-347
- Munteanu, M.G.¹ Vlahovicek, K.² Parthasarathy, S.³ Simon, I.⁴ Pongor, S.⁵

38
- 0029039118
- Sequence-dependent bending propensity of DNA as revealed by DNase I: Parameters for trinucleotides
- (1995) EMBO J. , vol.14 , pp. 1812-1818
- Brukner, I.¹ Sanchez, R.² Suck, D.³ Pongor, S.⁴

39
- 0028826669
- Trinucleotide models for DNA bending propensity: Comparison of models based on DNaseI digestion and nucleosome packaging data
- (1995) J. Biomol. Struct. Dynam. , vol.13 , pp. 309-317
- Brukner, I.¹ Sanchez, R.² Suck, D.³ Pongor, S.⁴

40
- 0032544507
- Two distinct modes of protein-induced bending in DNA
- (1998) J. Mol. Biol. , vol.282 , pp. 331-343
- El Hassan, M.A.¹ Calladine, C.R.²

41
- 0024397416
- Animal virus DNA replication
- (1989) Annu. Rev. Biochem. , vol.58 , pp. 671-717
- Challberg, M.D.¹ Kelly, T.J.²

42
- 0027258123
- Chromatin disruption in the promoter of human immunodeficiency virus type 1 during transcriptional activation
- (1993) EMBO J. , vol.12 , pp. 3249-3259
- Verdin, E.¹ Paras P., Jr.² Van Lint, C.³

43
- 0034644767
- Archaeal histone selection of nucleosome positioning sequences and the procaryotic origin of histone-dependent genome evolution
- (2000) J. Mol. Biol. , vol.303 , pp. 25-34
- Bailey, K.A.¹ Pereira, S.L.² Widom, J.³ Reeve, J.N.⁴

44
- 0030731459
- Archaeal nucleosomes
- (1997) Proc. Natl Acad. Sci. USA , vol.94 , pp. 12633-12637
- Pereira, S.L.¹ Grayling, R.A.² Lurz, R.³ Reeve, J.N.⁴

45
- 0034644722
- Crystal structures of recombinant histones HMfA and HMfB from the hyperthermophilic archaeon Methanothermus fervidus
- (2000) J. Mol. Biol. , vol.303 , pp. 35-47
- Decanniere, K.¹ Babu, A.M.² Sandman, K.³ Reeve, J.N.⁴ Heinemann, U.⁵

46
- 0030596486
- Short-range order in two eukaryotic genomes: Relation to chromosome structure
- (1996) J. Mol. Biol. , vol.259 , pp. 579-588
- Widom, J.¹

47
- 0032516764
- TGGA repeats impair nucleosome formation
- (1998) J. Mol. Biol. , vol.281 , pp. 253-260
- Cao, H.¹ Widlund, H.R.² Simonsson, T.³ Kubista, M.⁴

48
- 0031586220
- DNA sequence encodes information for nucleosome array formation
- (1997) J. Mol. Biol. , vol.270 , pp. 559-573
- Liu, K.¹ Stein, A.²

49
- 0030576982
- Correlation of intrinsic DNA curvature with DNA property periodicity
- (1996) FEBS Letters , vol.393 , pp. 65-68
- Gabrielian, A.¹ Pongor, S.²

* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.