Ribonuclease III: New sense from nuisance

International Journal of Biochemistry and Cell Biology

Volumn 34, Issue 2, 2002, Pages 116-129

  Conrad, Christian ^a   Rauhut, Reinhard ^a  

^a JUSTUS LIEBIG UNIVERSITY   (Germany)

Author keywords

dsRBD; Ribonuclease III family; Ribonucleases; RNA interference; RNA protein interactions

Indexed keywords

DOUBLE STRANDED RNA; MICROBIAL ENZYME; RIBONUCLEASE; RIBONUCLEASE III;

ENZYME ACTIVITY; ENZYME SPECIFICITY; ENZYME STRUCTURE; ENZYME SUBSTRATE; EUKARYOTE; GENE SILENCING; NONHUMAN; NUCLEOTIDE SEQUENCE; PROKARYOTE; PROTEIN DOMAIN; PROTEIN RNA BINDING; REVIEW; RNA PROCESSING; SPECIES DIFFERENCE;

ANIMALS; BACTERIAL PROTEINS; CATALYTIC DOMAIN; ENDORIBONUCLEASES; HUMANS; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; PROTEIN STRUCTURE, TERTIARY; RIBONUCLEASE III; RNA;

EUKARYOTA; PROKARYOTA;

EID: 0036155107     PISSN: 13572725     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1357-2725(01)00112-1     Document Type: Review

References (97)

1. Escherichia coli ribonucleases: Paradigms for understanding cellular RNA metabolism and regulation
2. Function, mechanism and regulation of bacterial ribonucleases
3. Exoribonucleases and their multiple roles in RNA metabolism
4. Processing of the precursors to small nucleolar RNAs and rRNAs requires common components
5. Exoribonuclease superfamilies: Structural analysis and phylogenetic distribution
6. Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach
7. Crystal structure and evolution of a transfer RNA splicing enzyme
8. Role for a bidentate ribonuclease in the initiation step of RNA interference
9. RNase G (CafA protein) and RNase E are both required for the 5′ maturation of 16S ribosomal RNA
10. The structural basis of ribosome activity in peptide bond synthesis
11. Purification and properties of ribonuclease III from Escherichia coli
12. Ribonuclease III
13. RNA processing and degradation by RNase III
14. A nuclease specific for double-stranded RNA
15. Substrate specificity of an RNase III-like activity from Bacillus subtilis
16. Bacillus subtilis RNase III gene: Cloning, function of the gene in Escherichia coli, and construction of Bacillus subtilis strains with altered rnc loci
17. Endoribonuclease RNase III is essential in Bacillus subtilis
18. Identification and analysis of the rnc gene for RNase III in Rhodobacter capsulatus
19. Different cleavage specificities of RNases III from Rhodobacter capsulatus and Escherichia coli
20. DNA sequencing of the Escherichia coli ribonuclease III gene and its mutations
21. RNase III autoregulation: Structure and function of rncO, the posttranscriptional 'operator'
22. Autoregulation of RNase III operon by mRNA processing
23. Expression and regulation of the rnc and pdxJ operons of Escherichia coli
24. Escherichia coli RNase III (rnc) autoregulation occurs independently of rnc gene translation
25. RNase III is positively regulated by T7 protein kinase
26. Expression and characterization of RNase III and Era proteins. Products of the rnc operon of Escherichia coli
27. Genetic analysis of the rnc operon of Escherichia coli
28. Analogous enzymes: Independent inventions in enzyme evolution
29. Prokaryotic genomes: The emerging paradigm of genome-based microbiology
30. Another bridge between kingdoms: tRNA splicing in archaea and eukaryotes
31. Archaeal introns: Splicing, intercellular mobility and evolution
32. The ribonuclease III site flanking 23S sequences in the 30S ribosomal precursor RNA of E. coli
33. Ribosome synthesis in Saccharomyces cerevisiae
34. Expansion segments: Regions of variable size that interrupt the universal core secondary structure of ribosomal RNA
35. Evolution of rRNA gene organization
36. RNase III cleavages in non-coding leaders of Escherichia coli transcripts control mRNA stability and genetic expression
37. Messenger RNA stability and its role in control of gene expression in bacteria and phages
38. Emerging features of mRNA decay in bacteria
39. The first step in the functional inactivation of the Escherichia coli polynucleotide phosphorylase messenger is a ribonuclease III processing at the 5′ end
40. Structure, reactivity, and biology of double-stranded RNA
41. Genetic uncoupling of the dsRNA-binding and RNA cleavage activities of the Escherichia coli endoribonuclease RNase III - The effect of dsRNA binding on gene expression
42. Analysis of mRNA decay and rRNA processing in Escherichia coli multiple mutants carrying a deletion in RNase III
43. RNase III cleavage is obligate for maturation but not for function of Escherichia coli pre-23S rRNA
44. Multiple pathways for primary processing of ribosomal RNA in Escherichia coli
45. Global transposon mutagenesis and a minimal Mycoplasma genome
46. A novel type of RNase III family proteins in eukaryotes
47. RNase III cleaves eukaryotic preribosomal RNA at a U3 snoRNP-dependent site
48. Processing of a dicistronic small nucleolar RNA precursor by the RNA endonuclease Rnt1
49. Yeast Rnt1p is required for cleavage of the pre-ribosomal RNA in the 3′ ETS but not the 5′ ETS
50. Yeast RNase III as a key processing enzyme in small nucleolar RNAs metabolism
51. Depletion of yeast RNase III blocks correct U2 3′ end formation and results in polyadenylated but functional U2 snRNA
52. Purification and characterization of the Pac1 ribonuclease of Schizosaccharomyces pombe
53. Substrate structure requirements of the Pac1 ribonuclease from Schizosaccharomyces pombe
54. Pac1p, an RNase III homolog, is required for formation of the 3′ end of U2 snRNA in Schizosaccharomyces pombe
55. The N-terminal domain that distinguishes yeast from bacterial RNase III contains a dimerization signal required for efficient double-stranded RNA cleavage
56. U1 snRNA is cleaved by RNase III and processed through an Sm site-dependent pathway
57. Seven novel methylation guide small nucleolar RNAs are processed from a common polycistronic transcript by Rat1p and RNase III in yeast
58. Musing on the structural organization of the exosome complex
59. Ribonuclease III cleavage of a bacteriophage T7 processing signal. Divalent cation specificity, and specific anion effects
60. Structural basis for the 3′-5′ exonuclease activity of Escherichia coli DNA polymerase I: A two metal ion mechanism
61. Regulation of ribonuclease III processing by double-helical sequence antideterminants
62. tRNA leucine identity and recognition sets
63. The transfer RNA identity problem: A search for rules
64. RNase III processing of intervening sequences found in helix 9 of 23S rRNA in the α-subclass of Proteobacteria
65. The cleavage specificity of RNase III
66. A conserved sequence element in ribonuclease III processing signals is not required for accurate in vitro enzymatic cleavage
67. Ribonuclease III processing of coaxially stacked RNA helices
68. RNase III cleavage of single-stranded RNA. Effect of ionic strength on the fideltiy of cleavage
69. Substrate recognition by a eukaryotic RNase III: The double-stranded RNA-binding domain of Rnt1p selectively binds RNA containing a 5′-AGNN- 3′ tetraloop
70. Comparative sequence analysis of ribonucleases HII, III, II PH and D
71. Rescue of the fission yeast snRNA synthesis mutant snm1 by overexpression of the double-strand-specific Pac1 ribonuclease
72. Defining the enzyme binding domain of a ribonuclease III processing signal. Ethylation interference and hydroxyl radical footprinting using catalytically inactive RNase III mutants
73. Mechanism of action of Escherichia coli ribonuclease III. Stringent chemical requirement for the glutamic acid 117 side chain and Mn(2+) rescue of the Glu117Asp mutant
74. Proteins binding to duplexed RNA: One motif, multiple functions
75. Structure of the dsRNA binding domain of E. coli RNase III
76. Human RNase III is a 160-kDa protein involved in preribosomal RNA processing
77. RNA interference-2001
78. RNA interference is mediated by 21- and 22-nucleotide RNAs
79. Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells
80. A species of small antisense RNA in posttranscriptional gene silencing in plants
81. A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA
82. Transgene and transposon silencing in Chlamydomonas reinhardtii by a DEAH-box RNA helicase
83. A link between RNA interference and nonsense-mediated decay in Caenorhabditis elegans
84. Protein function in the post-genomic era
85. Detecting protein function and protein-protein interactions from genome sequences
86. Disruption of an RNA helicase/RNAse III gene in Arabidopsis causes unregulated cell division in floral meristems
87. mRNA degradation. A tale of poly(A) and multiprotein machines
88. mRNA degradation in bacteria
89. mRNA stability in eukaryotes
90. Single-stranded-RNA binding proteins
91. Ethidium-dependent uncoupling of substrate binding and cleavage by Escherichia coli ribonuclease III
92. Structure of the double-stranded RNA-binding domain of the protein kinase PKR reveals the molecular basis of its dsRNA-mediated activation
93. RNA recognition by a Staufen double-stranded RNA-binding domain
94. Molecular basis of double-stranded RNA-protein interactions: Structure of a dsRNA-binding domain complexed with dsRNA
95. Recognition of a conserved class of RNA tetraloops by Saccharomyces cerevisiae RNase III
96. tRNA splicing
97. Solution structure of a substrate for the archaeal pre-tRNA splicing endonucleases: The bulge-helix-bulge motif