CKAAPs DB: A Conserved Key Amino Acid Positions Database

Nucleic Acids Research

Volumn 30, Issue 1, 2002, Pages 409-411

  Li, Wilfred W ^a   Reddy, Boojala V B ^a   Tate, John G ^a   Shindyalov, Ilya N ^a   Bourne, Philip E ^b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b San Diego   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; POLYPEPTIDE;

ARTICLE; BIBLIOGRAPHIC DATABASE; COMPUTER INTERFACE; COMPUTER PROGRAM; CONSERVED KEY AMINO ACID POSITIONS DATABASE; CONTROLLED STUDY; INFORMATION PROCESSING; INTERNET; ONTOGENY; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN ENGINEERING; PROTEIN FOLDING; PROTEIN SECONDARY STRUCTURE; PROTEIN STABILITY; PROTEIN STRUCTURE; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; STRUCTURE ANALYSIS; TAXONOMY;

EID: 0036084702     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/30.1.409     Document Type: Article

References (18)

1. Conserved key amino acid positions (CKAAPs) derived from the analysis of common substructures in proteins
2. Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
3. The FSSP database: Fold classification based on structure-structure alignment of proteins
4. Using the FASTA program to search protein and DNA sequence databases
5. The classification of amino acid conservation
6. Universally conserved positions in protein folds: Reading evolutionary signals about stability, folding kinetics and function
7. Folding studies of immunoglobulin-like β-sandwich proteins suggest that they share a common folding pathway
8. Identification of kinetically hot residues in proteins
9. A strategy for detecting the conservation of folding-nucleus residues in protein superfamilies
10. Tolerance of Arc repressor to multiple-alanine substitutions
11. Transmuting α helices and β sheets
12. A new algorithm for alignment of multiple protein structures using Monte Carlo optimization
13. CKAAPs DB: A conserved key amino acid positions database
14. An alternative view of protein fold space
15. Protein structure comparison by alignment of distance matrices
16. Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
17. Further additions to MolScript version 1.4, including reading and contouring of electron-density maps
18. MView: A web-compatible database search or multiple alignment viewer