QTL analysis of proteome and transcriptome variations for dissecting the genetic architecture of complex traits in maize

Plant Molecular Biology

Volumn 48, Issue 5-6, 2002, Pages 575-581

  Consoli, L ^a   Lefevre A ^a   Zivy, M ^a   De Vienne, D ^a   Damerval, C ^a  

^a INRA Institut National de la Recherche Agronomique   (France)

Author keywords

Molecular polymorphism; Opaque 2; Proteome; QTL; Transcriptome; Zein

Indexed keywords

CROPS; GENES; GRAIN (AGRICULTURAL PRODUCT); MASS SPECTROMETRY; PHYSIOLOGY; PROTEINS;

GENETIC ANALYSIS;

MOLECULAR BIOLOGY;

EMBRYOPHYTA; ZEA MAYS;

DNA BINDING PROTEIN; MESSENGER RNA; OPAQUE 2 PROTEIN, ZEA MAYS; OPAQUE-2 PROTEIN, ZEA MAYS; PROTEOME; TRANSCRIPTION FACTOR; VEGETABLE PROTEIN; ZEIN;

ARTICLE; GENE EXPRESSION REGULATION; GENETIC POLYMORPHISM; GENETIC TRANSCRIPTION; GENETIC VARIABILITY; GENETICS; MAIZE; METABOLISM; PHENOTYPE; POLYACRYLAMIDE GEL ELECTROPHORESIS; QUANTITATIVE TRAIT;

DNA-BINDING PROTEINS; ELECTROPHORESIS, POLYACRYLAMIDE GEL; GENE EXPRESSION REGULATION, PLANT; PHENOTYPE; PLANT PROTEINS; POLYMORPHISM, GENETIC; PROTEOME; QUANTITATIVE TRAIT, HERITABLE; RNA, MESSENGER; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC; VARIATION (GENETICS); ZEA MAYS; ZEIN;

EID: 0036010774     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1014840810203     Document Type: Article

References (40)

1. Melanie II: A third-generation software package for analysis of two-dimensional electrophoresis images II. Algorithms
2. The significance of digital gene expression profiles
3. Linkage relationships of loci controlling protein amounts in maritime pine (Pinus pinaster Ait.)
4. Relationship between phenotypic and marker distances: Theoretical and experimental investigations
5. Molecular markers and protein quantities as genetic descriptors in maize. II. Prediction of hybrids for forage traits
6. Molecular markers and protein quantities as genetic descriptors in maize. I. Genetic diversity among 21 inbred lines
7. Empirical threshold values for quantitative trait mapping
8. Quantification of individual zein isoforms resolved by two-dimensional electrophoresis. Genetic variability in 45 maize inbred line
9. The involvement of Opaque 2 on β-prolamin gene regulation in maize and Coix suggests a more general role for this transcriptional activator
10. Is the polymorphism of protein amounts related to phenotypic variability? A comparison of two-dimensional electrophoresis data with morphological traits in maize
11. Characterization of novel target proteins of the O2 mutation expressed during maize endosperm development
12. Quantitative trait loci underlying gene product variation: A novel perspective for analyzing regulation of genome expression
13. Genetic aspects of variation of protein amounts in maize and pea
14. Genetics of proteome variation for QTL characterization: Application to drought-stress responses in maize
15. Genetics, development and plant evolution
16. Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression
17. Quantitative expression of maize HSPs: Genetic dissection and association with thermotolerance
18. Protein identification methods in proteomics
19. Correlation between protein and mRNA abundance in yeast
20. The origin of lysine-containing proteins in opaque-2 maize endosperm
21. The O2 gene which regulates zein deposition in maize endosperm encodes a protein with structural homologies to transcriptional activators
22. High rates of polymorphism and recombination at the Opaque-2 locus in cultivated maize
23. Advances in protein solubilisation for two-dimensional electrophoresis
24. A simple and rapid procedure for hydrolyzing minute amounts of proteins with alkali
25. Improved method for isolating and quantitating α-amino nitrogen as nonprotein, true protein, salt-soluble proteins, zeins, and tree glutelins in maize endosperm
26. Association of protein amount polymorphism (PAP) among maize lines with performances of their hybrids
27. The maize regulatory locus Opaque-2 is inhibited by upstream open reading frames present in the leader sequence
28. The transcriptional activator Opaque-2 controls the expression of a cytosolic form of pyruvate orthophosphate dikinase-1 in maize endosperms
29. Regulatory genes and adaptation. Past, present and future
30. Mutant gene that changes protein composition and increases lysine content of maize endosperm
31. High resolution two-dimensional electrophoresis of proteins
32. A thousand points of light: The application of fluorescence detection technologies to two-dimensional gel electrophoresis and proteomics
33. The genetic organisation of zein
34. Maize regulatory gene Opaque-2 encodes a protein with a 'leucine-zipper' motif that binds to zein DNA
35. Opaque-2 is a transcriptional activator that recognizes a specific target site in 22-kD Zein genes
36. From proteins to proteomes: Large-scale protein identification by two-dimensional electrophoresis and amino acid analysis
37. Mass spectrometry and the age of the proteome
38. Toward elucidating the global gene expression patterns of developing Arabidopsis: Parallel analysis of 8300 genes by a high-density olgonucleotide probe array