Binding of ferric heme by the recombinant globin from the cyanobacterium Synechocystis sp. PCC 6803

Biochemistry

Volumn 40, Issue 21, 2001, Pages 6541-6552

  Lecomte, Juliette T J ^a   Scott, Nancy L ^a   Christie Vu, B ^a   Falzone, Christopher J ^a  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVATION ENERGY; AMINO ACIDS; BACTERIA; GENES; IRON; ISOMERS; NUCLEAR MAGNETIC RESONANCE; PH EFFECTS; POLYPEPTIDES; RATE CONSTANTS; SPECTROSCOPIC ANALYSIS;

VERTEBRATE MYOGLOBINS;

HEMOGLOBIN;

GLOBIN; HEMATIN;

AMINO ACID SEQUENCE; ARTICLE; BINDING AFFINITY; CYANOBACTERIUM; NONHUMAN; PH; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN CONFORMATION; SPECTROSCOPY;

AMINO ACID SEQUENCE; CYANOBACTERIA; FERRIC COMPOUNDS; GLOBINS; HEME; HISTIDINE; IRON; KINETICS; LIGANDS; MOLECULAR SEQUENCE DATA; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN BINDING; PROTEIN CONFORMATION; PROTONS; RECOMBINANT PROTEINS; THERMODYNAMICS;

BACTERIA (MICROORGANISMS); CETACEA; NOSTOC COMMUNE; PHYSETER CATODON; PROKARYOTA; SYNECHOCYSTIS; SYNECHOCYSTIS SP.; SYNECHOCYSTIS SP. PCC 6803; VERTEBRATA;

EID: 0035967512     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi010226u     Document Type: Article

References (95)

1. Couture, M., Chamberland, H., St-Pierre, B., Lafontaine, J., and Guertin, M. (1994) Mol. Gen. Genet. 243, 185-197.
2. Iwaasa, H., Takagi, T., and Shikama, K. (1990) J. Biol. Chem. 265, 8603-8609.
3. Iwaasa, H., Takagi, T., and Shikama, K. (1989) J. Mol. Biol. 208, 355-358.
4. Hill, D. R., Belbin, T. J., Thorsteinsson, M. V., Bassam, D., Brass, S., Ernst, A., Boger, P., Paerl, H., Mulligan, M. E., and Potts, M. (1996) J. Bacteriol. 178, 6587-6598.
5. Das, T. K., Weber, R. E., Dewilde, S., Wittenberg, J. B., Wittenberg, B. A., Yamauchi, K., Van Hauwaert, M. L., Moens, L., and Rousseau, D. L. (2000) Biochemistry 39, 14330-14340.
6. Das, T. K., Couture, M., Lee, H. C., Peisach, J., Rousseau, D. L., Wittenberg, B. A., Wittenberg, J. B., and Guertin, M. (1999) Biochemistry 38, 15360-15368.
7. Couture, M., Yeh, S. R., Wittenberg, B. A., Wittenberg, J. B., Quellet, Y., Rousseau, D. L., and Guertin, M. (1999) Proc. Natl. Acad. Sci. U.S.A. 96, 11223-11228.
8. Springer, B. A., Sligar, S. G., Olson, J. S., and Philips, G. N. J. (1994) Chem. Rev. 94, 699-714.
9. Ptitsyn, O. B., and Ting, K. L. (1999) J. Mol. Biol. 291, 671-682.
10. Perutz, M. F., Wilkinson, A. J., Paoli, M., and Dodson, G. G. (1998) Annu. Rev. Biophys. Biomol. Struct. 27, 1-34.
11. Pesce, A., Couture, M., Dewilde, S., Guertin, M., Yamauchi, K., Ascenzi, P., Moens, L., and Bolognesi, M. (2000) EMBO J. 19, 2424-2434.
12. Tsubamoto, Y., Matsuoka, A., Yusa, K., and Shikama, K. (1990) Eur. J. Biochem. 193, 55-59.
13. Thorsteinsson, M. V., Bevan, D. R., Ebel, R. E., Weber, R. E., and Potts, M. (1996) Biochim. Biophys. Acta 1292, 133-139.
14. Couture, M., Das, T. K., Lee, H. C., Peisach, J., Rousseau, D. L., Wittenberg, B. A., Wittenberg, J. B., and Guertin, M. (1999) J. Biol. Chem. 274, 6898-6910.
15. Scott, N. L., and Lecomte, J. T. J. (2000) Protein Sci. 9, 587-597.
16. Gill, S. C., and von Hippel, P. H. (1989) Anal. Biochem. 182, 319-326.
17. Antonini, E., and Brunori, M. (1971) Hemoglobin and myoglobin in their reactions with ligands, Vol. 12, North-Holland, Amsterdam.
18. de Duve, C. (1948) Acta Chem. Scand. 2, 264-289.
19. Falzone, C. J., Mayer, M. R., Whiteman, E. L., Moore, C. D., and Lecomte, J. T. J. (1996) Biochemistry 35, 6519-6526.
20. Schmid, F. X. (1989) in Protein structure. A practical approach (Creighton, T. E., Ed.) pp 251 -285, IRL Press, New York.
21. Live, D. H., Davis, D. G., Agosta, W. C., and Cowburn, D. (1984) J. Am. Chem. Soc. 106, 1939-1941.
22. Kay, L. E., Xu, G.-Y., Singer, A. U., Muhandiram, D. R., and Forman-Kay, J. D. (1993) J. Magn. Reson., Ser. B 101, 333-337.
23. Muhandiram, D. R., Farrow, N. A., Xu, G.-Y., Smallcombe, S. H., and Kay, L. E. (1993) J. Magn. Reson., Ser. B 102, 317-321.
24. Kay, L. E., Ikura, M., Tschudin, R., and Bax, A. (1990) J. Magn. Reson. 89, 496-514.
25. Bax, A., and Ikura, M. (1991) J. Biomol. NMR 1, 99-104.
26. Grzesiek, S., and Bax, A. (1992) J. Magn. Reson. 99, 201-207.
27. Cavanagh, J., Fairbrother, W. J., Palmer, A. G. I., and Skelton, N. J. (1996) Protein NMR Spectroscopy. Principles and Practice, Academic Press, San Diego, CA.
28. Marion, D., Ikura, M., Tschudin, R., and Bax, A. (1989) J. Magn. Reson. 85, 393-399.
29. Piotto, M., Saudek. V., and Sklenář, V. (1992) J. Biomol. NMR 2, 661-665.
30. Sklenář, V., Piotto, M., Leppik, R., and Saudek, V. (1993) J. Magn. Reson. 102, 241-245.
31. Inubushi, T., and Becker, E. D. (1983) J. Magn. Reson. 51, 128-133.
32. La Mar, G. N., Satterlee, J. D., and de Ropp, J. S. (2000) in The Porphyrins Handbook (Smith, K. M., Kadish, K., and Guilard, R., Eds.) pp 185-298, Academic Press, Burlington, MA.
33. Lyons, T. A., Ratnaswamy, G., and Pochapsky, T. C. (1996) Protein Sci. 5, 627-639.
34. Unger, S. W., Jue, T., and La Mar, G. N. (1985) J. Magn. Reson. 61, 448-456.
35. Nguyen, B. D., Xia, Z., Yeh, D. C., Vyas, K., Deaguero, H., and La Mar, G. N. (1999) J. Am. Chem. Soc. 121, 208-217.
36. McLachlan, S. J., La Mar, G. N., and Lee, K. B. (1988) Biochim. Biophys. Acta 957, 430-445.
37. La Mar, G. N., Toi, H., and Krishnamoorthi, R. (1984) J. Am. Chem. Soc. 106, 6395-6401.
38. Barshop, B. A., Wrenn, R. F., and Frieden, C. (1983) Anal. Biochem. 130, 134-145.
39. Dang, Q., and Frieden, C. (1997) Trends Biochem. Sci. 22, 317.
40. Hargrove, M. S., Barrick, D., and Olson, J. S. (1996) Biochemistry 35, 11293-11299.
41. Hunter, C. L., Lloyd, E., Eltis, L. D., Rafferty, S. P., Lee, H., Smith, M., and Mauk, A. G. (1997) Biochemistry 36, 1010-1017.
42. Liong, E. C., Dou, Y., Scott, E. E., Olson, J. S., and Phillips, G. N., Jr. (2001) J. Biol. Chem. 276, 9093-9100.
43. Smith, M. L., Paul, J., Ohlsson, P. I., Hjortsberg, K., and Paul, K. G. (1991) Proc. Natl. Acad. Sci. U.S.A. 88, 882-886.
44. Teale, F. W. J. (1959) Biochim. Biophys. Acta 35, 543.
45. Osteryoung, J. (1988) Methods Enzymol. 158, 243-267.
46. Couture, M., Das, T. K., Savard, P. Y., Ouellet, Y., Wittenberg, J. B., Wittenberg, B. A., Rousseau, D. L., and Guertin, M. (2000) Eur. J. Biochem. 267, 4770-4780.
47. Dangi, B., Sarma, S., Yan, C., Banville, D. L., and Guiles, R. D. (1998) Biochemistry 37, 8289-8302.
48. Banci, L., Bertini, I., Rosato, A., and Scacchieri, S. (2000) Eur. J. Biochem. 267, 755-766.
49. Sukits, S. F., and Satterlee, J. D. (1996) Biophys. J. 71, 2848-2856.
50. La Mar, G. N., Burns, P. D., Jackson, J. T., Smith, K. M., Langry, K. C., and Strittmatter, P. (1981) J. Biol. Chem. 256, 6075-6079.
51. Kuzelova, K., Mrhalova, M., and Hrkal, Z. (1997) Biochim. Biophys. Acta 1336, 497-501.
52. Emerson, S. D., and La Mar, G. N. (1990) Biochemistry 29, 1556-1566.
53. Yeh, D. C., Thorsteinsson, M. V., Bevan, D. R., Potts, M., and La Mar, G. N. (2000) Biochemistry 39, 1389-1399.
54. Walker, F. A., Emrick, D., Rivera, J. E., Hanquet, B. J., and Buttlaire, D. H. (1988) J. Am. Chem. Soc. 110, 6234-6340.
55. Hsu, M. C., and Woody, R. W. (1971) J. Am. Chem. Soc. 93, 3515-3525.
56. Aojula, H. S., Wilson, M. T., Moore, G. R., and Williamson, D. J. (1988) Biochem. J. 250, 853-858.
57. Schnellbacher, E., and Lumper, L. (1971) Hoppe-Seyler's Z. Physiol. Chem. 352, 615-628.
58. Ihara, M., Takahashi, S., Ishimori, K., and Morishima, I. (2000) Biochemistry 39, 5961-5970.
59. Robinson, C. R., Liu, Y., O'Brien, R., Sligar, S. G., and Sturtevant, J. M. (1998) Protein Sci. 7, 961-965.
60. Dill, K. (1990) Biochemistry 29, 7133-7155.
61. Potts, M., Angeloni, S. V., Ebel, R. E., and Bassam, D. (1992) Science 256, 1690-1691.
62. Arredondo-Peter, R., Hargrove, M. S., Sarath, G., Moran, J. F., Lohrman, J., Olson, J. S., and Klucas, R. V. (1997) Plant Physiol. 115, 1259-1266.
63. Hargrove, M. S., Brucker, E. A., Stec, B., Sarath, G., Arredondo-Peter, R., Klucas, R. V., Olson, J. S., and Phillips, G. N. (2000) Struct. Fold. Des. 8, 1005-1014.
64. Hargrove, M. S. (2000) Biophys. J. 79, 2733-2738.
65. Trent, J. T., Hvitved, A., and Hargrove, M. S. (2001) Biochemistry (in press).
66. Kloek, A. P., Yang, J., Mathews, F. S., Frieden, C., and Goldberg, D. E. (1994) J. Biol. Chem. 269, 2377-2379.
67. De Baere, I., Perutz, M. F., Kiger, L., Marden, M. C., and Poyart, C. (1994) Proc. Natl. Acad Sci. U.S.A. 91, 1594-1597.
68. Miele, A. E., Santanche, S., Travaglini-Allocatelli, C., Vallone, B., Brunori, M., and Bellelli, A. (1999) J. Mol. Biol. 290, 515-524.
69. Hargrove, M. S., Wilkinson, A. J., and Olson, J. S. (1996) Biochemistry 35, 11300-11309.
70. Deeb, R. S., and Peyton, D. H. (1992) Biochemistry 31, 468-474.
71. Singh, H. K., and Wilson, M. T. (1990) Biochem. Soc. Trans. 18, 1272-1273.
72. Yec, S., and Peyton, D. H. (1995) Biochim. Biophys. Acta 1252, 295-299.
73. Privalov, P. L., Griko, Y. V., Venyaminov, S. Y., and Kutyshenko, V. P. (1986) J. Mol. Biol. 190, 487-498.
74. Pfeil, W. (1993) Protein Sci. 2, 1497-1501.
75. Breslow, E., Beychok, S., Hardman, K. D., and Gurd, F. R. N. (1965) J. Biol. Chem. 240, 304-309.
76. Hughson, F. M., Wright, P. E., and Baldwin, R. L. (1990) Science 249, 1544-1548.
77. Lecomte, J. T. J., Kao, Y.-H., and Coeco, M. J. (1996) Proteins: Struct., Funct., Genet. 25, 267-285.
78. Falzone, C. J., Wang, Y., Vu, B. C., Scott, N. L., Bhattacharya, S., and Lecomte, J. T. J. (2001) Biochemistry 40, 4879-4891.
79. Moore, G. R., and Pettigrew, G. W. (1990) in Cytochromes c. Evolutionary, structural and physicochemical aspects (Rich, A., Ed.) Springer-Verlag, New York.
80. Tezcan, F. A., Winkler, J. R., and Gray, H. B. (1998) J. Am. Chem. Soc. 120, 13383-13388.
81. Stellwagen, E. (1978) Nature 275, 73-74.
82. Goodin, D. B., and McRee, D. E. (1993) Biochemistry 32, 3313-3324.
83. Lloyd, E., Hildebrand, D. P., Tu, K. M., and Mauk, A. G. (1995) J. Am. Chem. Soc. 117, 6434-6438.
84. Kassner, R. J. (1972) Proc. Natl. Acad. Sci. U.S.A. 69, 2263-2267.
85. Lee, K. B., Jun, E., La Mar, G. N., Rezzano, I. N., Pandey, R. K., Smith, K. M., Walker, F. A., and Buttlaire, D. H. (1991) J. Am. Chem. Soc. 113, 3576-3583.
86. Wang, Z. Q., Wang, Y. H., Wang, W. H., Xue, L. L. Wu, X. Z., Xie, Y., and Huang, Z. X. (2000) Biophys. Chem. 83, 3-17.
87. Rivera, M., Seetharaman, R., Girdhar, D., Wirtz, M., Zhang, X., Wang, X., and White, S. (1998) Biochemistry 37, 1485-1494.
88. Peterson, E. S., Friedman, J. M., Chien, E. Y., and Sligar, S. G. (1998) Biochemistry 37, 12301-12319.
89. Wu, Y., Chien, E. Y., Sligar, S. G., and La Mar, G. N. (1998) Biochemistry 37, 6979-6990.
90. Smerdon, S. J., Krzywda, S., Wilkinson, A. J., Brantley, R. E., Jr., Carver, T. E., Hargrove, M. S., and Olson, J. S. (1993) Biochemistry 32, 5132-5138.
91. Barrick, D. (2000) Proteins 39, 291-308.
92. Lee, K. B., McLachlan, S. J., and La Mar, G. N. (1994) Biochim. Biophys. Acta 1208, 22-30.
93. Aono, S., Honma, Y., Ohkubo, K., Tawara, T., Kamiya, T., and Nakajima, H. (2000) J. Inorg. Biochem. 82, 51-56.
94. Arnoux, P., Haser, R., Izadi, N., Lecroisey, A., Delepierre, M., Wandersman, C., and Czjzek, M. (1999) Nat. Struct. Biol. 6, 516-520.
95. Kraulis, P. (1991) J. Appl. Crystallogr. 24, 946-950.