Characterization of equine microsatellites and microsatellite-linked repetitive elements (eMLREs) by efficient cloning and genotyping methods

DNA Research

Volumn 8, Issue 1, 2001, Pages 33-45

  Tozaki, Teruaki ^a,b   Mashima, Suguru ^b   Hirota, Kei Ichi ^b   Miura, Nobuyoshi ^b   Choi Miura, Nam Ho ^a   Tomita, Motowo ^a  

^a SHOWA UNIVERSITY   (Japan)

^b LABORATORY OF RACING CHEMISTRY   (Japan)

Author keywords

Equine; Microsatellite; MLRE; Polymorphism; Repetitive element

Indexed keywords

EQUIDAE;

MICROSATELLITE DNA;

ANIMAL; ARTICLE; DNA SEQUENCE; ECONOMICS; GENE LIBRARY; GENETIC LINKAGE; GENETICS; GENOTYPE; HORSE; METHODOLOGY; MOLECULAR CLONING; MOLECULAR GENETICS; NUCLEOTIDE REPEAT; NUCLEOTIDE SEQUENCE;

ANIMALS; BASE SEQUENCE; CLONING, MOLECULAR; GENOMIC LIBRARY; GENOTYPE; HORSES; LINKAGE (GENETICS); MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; REPETITIVE SEQUENCES, NUCLEIC ACID; SEQUENCE ANALYSIS, DNA;

EID: 0035961695     PISSN: 13402838     EISSN: None     Source Type: Journal    
DOI: 10.1093/dnares/8.1.33     Document Type: Article

References (41)

1. Weber, J. L. and May, P. E. 1989, Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction, Am. J. Hum. Genet., 44, 388-396.
2. Litt, M. and Luty, J. A. 1989, A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene, Am. J. Hum. Genet., 44, 397-401.
3. Tozaki, T., Sakagami, M., Mashima, S., Hirota, K., and Mukoyama, H. 1995, ECA-3: equine (CA) repeat polymorphism at chromosome 2p1.3-4, Anim. Genet., 26, 283.
4. Raudsepp, T., Fronicke, L., Scherthan, H., Gustavsson, I., and Chowdhary, B. P. 1996, Zoo-FISH delineates conserved chromosomal segments in horse and man, Chrom. Res., 4, 218-225.
5. Raudsepp, T., Otte, K., Rozell, B., and Chowdhary, B. P. 1997, FISH mapping of the IGF2 gene in horse and donkey: Detection of homology with HSA11, Mamm. Genome, 8, 569-572.
6. Rettenberger, G., Adbo, G., and Stranzinger, G. 1996, Zoo-FISH analysis in the horse, Equus caballus, detects regions homologous to human chromosome 3 and 14, J. Anim. Breeding & Genet., 113, 145-148.
7. Tozaki, T., Hirota, K., Mashima, S., Tomita, M., and Mukoyama, H. 1998, Cloning and characterization of the equine F18 gene, which has a novel exon, Anim. Genet., 29, 381-384.
8. Lear, T. L., Adams, M. H., Sullivan, N. D., McDowell, K. J., and Bailey, E. 1998a, Assignment of the horse progesterone receptor (PGR) and estrogen receptor (ESR1) genes to horse chromosomes 7 and 31, respectively, by in situ hybridization, Cytogenet. & Cell Genet., 82, 110-111.
9. Lear, T. L., Breen, M., Ponce de Leon, F. A. et al. 1998b, Cloning and chromosomal localization of MX1 and ETS2 to chromosome 26 of the horse (Equus caballus), Chrom. Res., 6, 333-335.
10. Lear, T. L., Coogle, L. D., and Bailey, E. 1998c, Assignment of the horse mitochondrial glutamate oxaloacetate transaminase 2 (GOT2) and v-kit Hardy-Zuckerman 4 feline sarcoma viral oncogene homolog (KIT) to horse chromosome 3 by in situ hybridization, Cytogenet. & Cell Genet., 82, 112-113.
11. Godard, S., Schibler, L., Oustry, A., Cribiu, E. P., and Guerin, G. 1998, Construction of a horse BAC library and cytogenetical assignment of 20 type I and II makers, Mamm. Genome, 9, 633-637.
12. Williams, H., Richards, C. M., Konfortov, B. A., Miller, J. R., and Tucker, E. M. 1993, Synteny mapping in the horse using horse-mouse heterohybridomas, Anim. Genet., 24, 257-260.
13. Baily, E., Graves, K. T., Cothran, E. G., Reid, R., Lear, T. L., and Ennis, R. B. 1995, Synteny-mapping horse microsatellite markers using a heterohybridoma panel, Anim. Genet., 26, 177-180.
14. Caetano, A. R., Pomp, D., Murray, J. D., and Bowling, A. T. 1999a, Comparative mapping of 18 equine type I genes assigned by somatic cell hybrid analysis, Mamm. Genome, 10, 271-276.
15. Caetano, A. R., Lyons, L. A., Laughlin, T. F., O'Brien, S. J., Murray, J. D., and Bowling, A. T. 1999b, Equine synteny mapping of comparative anchor tagged sequences (CATS) from human chromosome 5, Mamm. Genome, 10, 1082-1084.
16. Hopman, T. J., Han, E. B., Story, M. R. et al. 1999, Equine dinucleotide repeat loci COR001-COR020, Anim. Genet., 30, 225-226.
17. Murphie, A. M., Hopman, T. J., Schug, M. D. et al. 1999, Equine dinucleotide repeat loci COR021-COR040, Anim. Genet., 30, 235-237.
18. Ruth, L. S., Hopman, T. J., Schug, M. D. et al. 1999, Equine dinucleotide repeat loci COR041-COR060, Anim. Genet., 30, 320-321.
19. Tallmadge, R. L., Hopman, T. J., Schug, M. D. et al. 1999a, Equine dinucleotide repeat loci COR061-COR080, Anim. Genet., 30, 462-463.
20. Tallmadge, R. L., Evans, K. G., Hopman, T. J. et al. 1999b, Equine dinucleotide repeat loci COR081-COR100, Anim. Genet., 30, 470-471.
21. Tozaki, T., Kakoi, H., Mashima, S. et al. 2000a, The isolation and characterization of 18 equine microsatellite loci, TKY272-TKY289, Anim. Genet., 31, 149-150.
22. Tozaki, T., Kakoi, H., Mashima, S. et al. 2000b, The isolation and characterization of 34 equine microsatellite loci, TKY290-TKY323, Anim. Genet., 31, 234-236.
23. Shiue, Y. L., Bickel, L. A., Caetano, A. R. et al. 1999, A synteny map of the horse genome comprised of 240 microsatellite and RAPD markers, Anim. Genet., 30, 1-9.
24. Sakagami, M., Tozaki, T., Mashima, S., Hirota, K., and Mukoyama, H. 1995, Equine parentage testing by microsatellite locus at chromosome 1q2.1, Anim. Genet., 26, 123-124.
25. Breen, M., Lindgren, G., Binns, M. M. et al. 1997, Genetical and physical assignments of equine microsatellites - First integration of anchored markers in horse genome mapping, Mamm. Genome, 8, 267-273.
26. Lindgren, G., Sandberg, K., Persson, H. et al. 1998, A primary male autosomal linkage map of the horse genome, Genome Res., 8, 951-966.
27. Swinburne, J., Gerstenberg, C., Breen, M. et al. 2000, First comprehensive low-density horse linkage map based on two 3-generation, full-sibling, cross-bred horse reference families, Genomics, 66, 123-134.
28. Tozaki, T., Inoue, S., Mashima, S., Ohta, N., Miura, N., and Tomita, M. 2000c, Sequence analysis of trinucleotide repeat microsatellites from an enrichment library of the equine genome, Genome, 43, 354-365.
29. Schuelke, M. 2000, An economic method for the fluorescent labeling of PCR fragments, Nat. Biotechnol., 18, 233-234.
30. Sakagami, M., Ohshima, K., Mukoyama, H., Yasue, H., and Okada, N. 1994, A novel tRNA species as an origin of Short Interspersed Repetitive Elements (SINEs), J. Mol. Biol., 239, 731-735.
31. Gallagher, P. C., Lear, T. L., Coogle, L. D., and Bailey, E. 1999, Two SINE families associated with equine microsatellite loci, Mamm. Genome, 10, 140-144.
32. Hirota, K., Mashima, S., Tozaki, T., Sakagami, M., Mukoyama, H., and Miura, N. 1997, Sequence tagged sites on horse chromosomes, Arch. Zootec., 46, 3-7.
33. Kakoi, H., Tozaki, T., Hirota, K., and Mashima, S. 1999, Genetic polymorphisms of equine microsatellite loci: TKY16, TKY19, and TKY21, Anim. Genet., 30, 68-69.
34. Gross-Bellard, M., Oudet, P., and Chambon, P. 1973, Isolation of high-molecular-weight DNA from mammalian cells, Eur. J. Biochem., 36, 32-38.
35. Tarczynski, M. C., Meyer, W. J., Min, J. J., Wood, K. A., and Hellwig, R. J. 1994, Two-minute miniprep method for plasmid DNA isolation, Biotechniques, 16, 514-519.
36. Kumar, S., Fuller, C. W., Nampalli, S. et al. 1999, Uniform band intensities in fluorescent dye terminator sequencing, Nucleosides Nucleotides, 18, 1101-1103.
37. Beckman, J. S. and Weber, J. L. 1992, Survey of human and rat microsatellites, Genomics, 12, 627-631.
38. Kaukinen, J. and Varvio, S. L. 1992, Artiodactyl retroposons: association with microsatellites and use in SINE-morph detection by PCR, Nucleic Acids Res., 20, 2955-2958.
39. Coitman, D. W. and Wright, J. M. 1992, Can SINEs: a family of tRNA-derived retroposons specific to the superfamily Canoidea, Nucleic Acids Res., 22, 2726-2730.
40. Izsvak, Z., Iviks, Z., Garcia-Estefania, D., Fahrenkrug, S., and Hackett, P. B. 1996, DANA elements: a family of composite, tRNA-derived short interspersed DNA elements associated with mutational activities in zebrafish (Danio rerio), Genetics, 93, 1077-1081.
41. Arcot, S. S., Wang, Z., Weber, J. L., Deininger, P. L., and Batzer, M. A. 1995, Alu repeats: a source for the genesis of primate microsatellites, Genomics, 29, 136-144.