-
2
-
-
0028832822
-
-
Cubitt, A.; Heim, R.; Adams, S.; Boyd, A.; Gross, L.; Tsien, R.Y. Trends Biochem. Sci. 1995, 20, 448.
-
(1995)
Trends Biochem. Sci.
, vol.20
, pp. 448
-
-
Cubitt, A.1
Heim, R.2
Adams, S.3
Boyd, A.4
Gross, L.5
Tsien, R.Y.6
-
3
-
-
0029780351
-
-
Yang, F.; Moss, L.G.; Phillips, G.N., Jr. Nat. Biotechnol. 1996, 14, 1246.
-
(1996)
Nat. Biotechnol.
, vol.14
, pp. 1246
-
-
Yang, F.1
Moss, L.G.2
Phillips G.N., Jr.3
-
4
-
-
0030953638
-
-
Brejc, K.; Sixma, T.K.; Kitts, P.A.; Kain, S.R.; Tsien, R.Y.; Ormö, M. Proc. Natl. Acad. Sci. U.S.A. 1997, 94, 2306.
-
(1997)
Proc. Natl. Acad. Sci. U.S.A.
, vol.94
, pp. 2306
-
-
Brejc, K.1
Sixma, T.K.2
Kitts, P.A.3
Kain, S.R.4
Tsien, R.Y.5
Ormö, M.6
-
5
-
-
0029847806
-
-
Ormö, M.; Kubitt, A.B.; Kallio, K.; Gross, L.A.; Tsien, R.Y.; Remington, S.J. Science 1996, 273, 1392.
-
(1996)
Science
, vol.273
, pp. 1392
-
-
Ormö, M.1
Kubitt, A.B.2
Kallio, K.3
Gross, L.A.4
Tsien, R.Y.5
Remington, S.J.6
-
6
-
-
0031134224
-
-
Palm, G.J.; Zdanov, A.; Gaitanaris, G.A.; Stauber, R.; Pavlakis, G.N.; Wlodawer, A. Nat. Struct. Biol. 1997, 4, 361.
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 361
-
-
Palm, G.J.1
Zdanov, A.2
Gaitanaris, G.A.3
Stauber, R.4
Pavlakis, G.N.5
Wlodawer, A.6
-
7
-
-
0030832226
-
-
Dickson, R.M.; Cubitt, A.B.; Tsien, R.Y.; Moerner, W.E. Nature 1997, 388, 355.
-
(1997)
Nature
, vol.388
, pp. 355
-
-
Dickson, R.M.1
Cubitt, A.B.2
Tsien, R.Y.3
Moerner, W.E.4
-
8
-
-
0034212061
-
-
Cinelli, R.A.G.; Ferrari, A.; Pellegrini, V.; Tyagi, M.; Giacca, M.; Beltram, F. Photochem. Photobiol. 2000, 71, 771.
-
(2000)
Photochem. Photobiol.
, vol.71
, pp. 771
-
-
Cinelli, R.A.G.1
Ferrari, A.2
Pellegrini, V.3
Tyagi, M.4
Giacca, M.5
Beltram, F.6
-
9
-
-
0033609034
-
-
Elsliger, M.; Wachter, R.M.; Hanson, G.T.; Kallio, K.; Remington, S.J. Biochemistry 1999, 38, 5296.
-
(1999)
Biochemistry
, vol.38
, pp. 5296
-
-
Elsliger, M.1
Wachter, R.M.2
Hanson, G.T.3
Kallio, K.4
Remington, S.J.5
-
10
-
-
0032386424
-
-
Voityuk, A.A.; Michel-Beyerle, M.E.; Rösh, N. Chem. Phys. 1998, 231, 13. Voityuk, A.A.; Michel-Beyerle, M.E.; Rösh, N. Chem. Phys. Lett. 1997, 272, 162. Voityk, A.A.; Michel-Beyerle, M.E.; Rösh, N. Chem. Phys. Lett. 1997, 296, 269.
-
(1998)
Chem. Phys.
, vol.231
, pp. 13
-
-
Voityuk, A.A.1
Michel-Beyerle, M.E.2
Rösh, N.3
-
11
-
-
0031587905
-
-
Voityuk, A.A.; Michel-Beyerle, M.E.; Rösh, N. Chem. Phys. 1998, 231, 13. Voityuk, A.A.; Michel-Beyerle, M.E.; Rösh, N. Chem. Phys. Lett. 1997, 272, 162. Voityk, A.A.; Michel-Beyerle, M.E.; Rösh, N. Chem. Phys. Lett. 1997, 296, 269.
-
(1997)
Chem. Phys. Lett.
, vol.272
, pp. 162
-
-
Voityuk, A.A.1
Michel-Beyerle, M.E.2
Rösh, N.3
-
12
-
-
0000789942
-
-
Voityuk, A.A.; Michel-Beyerle, M.E.; Rösh, N. Chem. Phys. 1998, 231, 13. Voityuk, A.A.; Michel-Beyerle, M.E.; Rösh, N. Chem. Phys. Lett. 1997, 272, 162. Voityk, A.A.; Michel-Beyerle, M.E.; Rösh, N. Chem. Phys. Lett. 1997, 296, 269.
-
(1997)
Chem. Phys. Lett.
, vol.296
, pp. 269
-
-
Voityk, A.A.1
Michel-Beyerle, M.E.2
Rösh, N.3
-
13
-
-
0033065308
-
-
Weber, W.; Helms, V.; McCammon, J.A.; Langhoff, P. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 6177.
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 6177
-
-
Weber, W.1
Helms, V.2
McCammon, J.A.3
Langhoff, P.4
-
14
-
-
0011489063
-
-
In press
-
During the submission of this paper, a referee brought to our attention the following related paper: Langhoff et al. Chromophore Charge States and the Proton Shuttle Mechanism in Green Fluorescent Protein: Inferences Drawn from Ab initio Theoretical Studies of Structures and Infrared Absorption Spectra. J. Phys. Chem. B 2001. In press.
-
(2001)
J. Phys. Chem. B
-
-
-
15
-
-
0032374089
-
-
van Thor, J.J.; Pierik, A.J.; Nugteren-Roodzant, I.; Xie, A.; Hellingwerf, K.J. Biochemistry 1998, 37, 16915.
-
(1998)
Biochemistry
, vol.37
, pp. 16915
-
-
Van Thor, J.J.1
Pierik, A.J.2
Nugteren-Roodzant, I.3
Xie, A.4
Hellingwerf, K.J.5
-
16
-
-
0034681929
-
-
Bell, A.F.; He, X.; Wachter, R.M.; Tonge, P.J. Biochemistry 2000, 39, 4423.
-
(2000)
Biochemistry
, vol.39
, pp. 4423
-
-
Bell, A.F.1
He, X.2
Wachter, R.M.3
Tonge, P.J.4
-
17
-
-
0035831564
-
-
Cinelli, R.A.G.; Tozzini, V.; Pellegrini, V.; Beltram, F.; Cerullo, G.; Zavelani-Rossi, M.; Tyagi, M.; Giacca, M. Phys. Rev. Lett. 2001, 86, 3439.
-
(2001)
Phys. Rev. Lett.
, vol.86
, pp. 3439
-
-
Cinelli, R.A.G.1
Tozzini, V.2
Pellegrini, V.3
Beltram, F.4
Cerullo, G.5
Zavelani-Rossi, M.6
Tyagi, M.7
Giacca, M.8
-
22
-
-
0012347344
-
-
Bifone, A.; de Groot, H.J.M.; Buda, F. J. Chem. Phys. B 1997, 101 2954. Bifone, A.; de Groot, H.J.M.; Buda, F. Chem Phys. Lett. 1996, 248 165.
-
(1997)
J. Chem. Phys. B
, vol.101
, pp. 2954
-
-
Bifone, A.1
De Groot, H.J.M.2
Buda, F.3
-
23
-
-
0030580643
-
-
Bifone, A.; de Groot, H.J.M.; Buda, F. J. Chem. Phys. B 1997, 101 2954. Bifone, A.; de Groot, H.J.M.; Buda, F. Chem Phys. Lett. 1996, 248 165.
-
(1996)
Chem Phys. Lett.
, vol.248
, pp. 165
-
-
Bifone, A.1
De Groot, H.J.M.2
Buda, F.3
-
26
-
-
0000064930
-
-
Tassone, F.; Mauri, F.; Car, R. Phys. Rev. B 1994, 50, 10561.
-
(1994)
Phys. Rev. B
, vol.50
, pp. 10561
-
-
Tassone, F.1
Mauri, F.2
Car, R.3
-
29
-
-
33744678467
-
-
Giannozzi, P.; de Gironcoli, S.; Pavone, P.; Baroni, S. Phys. Rev. B 1991, 43, 7231.
-
(1991)
Phys. Rev. B
, vol.43
, pp. 7231
-
-
Giannozzi, P.1
De Gironcoli, S.2
Pavone, P.3
Baroni, S.4
-
30
-
-
0033612748
-
-
Kurimoto, M.; Subramony, P.; Gurney, R.W.; Lovell, S.; Chmielewsky, J.; Kahr, B. J. Am. Chem. Soc. 1999, 121, 6952.
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 6952
-
-
Kurimoto, M.1
Subramony, P.2
Gurney, R.W.3
Lovell, S.4
Chmielewsky, J.5
Kahr, B.6
-
31
-
-
0032532156
-
-
Wachter, R.M.; Elsliger, M.-A.; Kallio, K.; Hanson, G.T.; Remington, S.J. Structure 1998, 6, 1269.
-
(1998)
Structure
, vol.6
, pp. 1269
-
-
Wachter, R.M.1
Elsliger, M.-A.2
Kallio, K.3
Hanson, G.T.4
Remington, S.J.5
-
32
-
-
0011389762
-
-
note
-
Energy differences of 0.05 eV are usually considered at the limiting confidence level in the present approximation. Moreover, the stabilization/ destabilization introduced by the environment and by the vibrational entropy should be considered.
-
-
-
-
33
-
-
0001484714
-
-
Saitta, A.M.; Buda, F.; Fiumara, G.; Giaquinta, P.V. Phys. Rev. B 1996, 53, 1446.
-
(1996)
Phys. Rev. B
, vol.53
, pp. 1446
-
-
Saitta, A.M.1
Buda, F.2
Fiumara, G.3
Giaquinta, P.V.4
-
34
-
-
0011489721
-
-
note
-
10
-
-
-
-
35
-
-
0011389763
-
-
note
-
The change in proton affinity (PA) can be roughly estimated via a Förster cycle, according to which the variation of PA of S upon excitation is PA(S*) - PA(S) = gap(S) - gap(HS), were S and HS are the protonated and deprotonated state, respectively.
-
-
-
-
36
-
-
0003716472
-
-
Clark, R.J.H., Hester, R.E., Eds.; Heyden, London
-
Curry, B.; Palings, I.; Broek, A.D.; Pardoen, J.A.; Lugtenburg, J.; Mathies, R. In Advances in Infrared and Raman Spectroscopy; Clark, R.J.H., Hester, R.E., Eds.; Heyden, London, 1985; Vol. 12.
-
(1985)
Advances in Infrared and Raman Spectroscopy
, vol.12
-
-
Curry, B.1
Palings, I.2
Broek, A.D.3
Pardoen, J.A.4
Lugtenburg, J.5
Mathies, R.6
-
37
-
-
0011489065
-
-
The thermatization is achieved by adopting the usual procedure of randomizing initial conditions (for example, see: 20)
-
The thermatization is achieved by adopting the usual procedure of randomizing initial conditions (for example, see: 20).
-
-
-
-
38
-
-
0011437492
-
-
Additional information is available on request
-
Additional information is available on request.
-
-
-
-
39
-
-
0011389036
-
-
note
-
Changing the scaling factors by 10-20% did not produce any qualitative change in the spectrum. Any accurate choice of these factors would be inappropriate, since the description of the change in bond strengths due to the electronic excitation is only qualitative.
-
-
-
-
40
-
-
0033517273
-
-
Blanchet, V.; Zgierski, M.Z.; Seideman, T.; Stolow, A. Nature 1999, 401, 52. Concerning the time length of our simulation, we observe that a time scale of 1.5 ps does not allow a complete thermalization, implying that the "hot-state" situation is described.
-
(1999)
Nature
, vol.401
, pp. 52
-
-
Blanchet, V.1
Zgierski, M.Z.2
Seideman, T.3
Stolow, A.4
-
41
-
-
0034287425
-
-
Moritsugu, K.; Miyashita, O.; Kidera, A. Phys. Rev. Lett. 2000, 85, 3970.
-
(2000)
Phys. Rev. Lett.
, vol.85
, pp. 3970
-
-
Moritsugu, K.1
Miyashita, O.2
Kidera, A.3
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