Stabilities and isomeric equilibria in solutions of monomeric metal-ion complexes of guanosine 5′-triphosphate (GTP4-) and inosine 5′-triphosphate (ITP4-) in comparison with those of adenosine 5′-triphosphate (ATP4-)

Chemistry - A European Journal

Volumn 7, Issue 17, 2001, Pages 3729-3737

  Sigel, Helmut ^a   Bianchi, Emanuela M ^a   Corfù, Nicolas A ^a   Kinjo, Yoshiaki ^b   Tribolet, Roger ^a   Martin, R Bruce ^c  

^a UNIVERSITY OF BASEL   (Switzerland)

^b UNIVERSITY OF THE RYUKYUS   (Japan)

^c UNIVERSITY OF VIRGINIA   (United States)

Author keywords

Macrochelates; Metal ion complexes; Nucleic acids; Nucleotides; Stability constants

Indexed keywords

ALKALINITY; IONS; ISOMERS; MAGNESIUM PRINTING PLATES; NUCLEIC ACIDS; PH; POTENTIOMETERS (ELECTRIC MEASURING INSTRUMENTS); TITRATION;

MACROCHELATES;

ADENOSINETRIPHOSPHATE;

ADENOSINE TRIPHOSPHATE; CATION; GUANOSINE TRIPHOSPHATE; HEAVY METAL; INOSINE TRIPHOSPHATE; METAL COMPLEX; METAL ION; NUCLEIC ACID; PURINE NUCLEOTIDE;

ARTICLE; BINDING SITE; CHELATION; CHEMICAL STRUCTURE; CHEMISTRY; COMPARATIVE STUDY; DRUG STABILITY; ISOMERISM; METABOLISM; PH; POTENTIOMETRY; PROTEIN STABILITY; PROTEIN STRUCTURE; PROTON NUCLEAR MAGNETIC RESONANCE; SOLUTION AND SOLUBILITY; STEREOSPECIFICITY;

ADENOSINE TRIPHOSPHATE; CATIONS; DRUG STABILITY; GUANOSINE TRIPHOSPHATE; HYDROGEN-ION CONCENTRATION; INOSINE TRIPHOSPHATE; ISOMERISM; METALS, HEAVY; MODELS, MOLECULAR; PURINE NUCLEOTIDES; SOLUTIONS;

EID: 0035801630     PISSN: 09476539     EISSN: None     Source Type: Journal    
DOI: 10.1002/1521-3765(20010903)7:17<3729::AID-CHEM3729>3.0.CO;2-E     Document Type: Article

References (102)

1. a) J. J. R. Fraústo da Silva, R. J. P. Williams, The Biological Chemistry of the Elements Clarendon, Oxford, 1991, pp. 1-561;
2. b) Metal Ions in Biological Sytems, Vol. 32: Interactions of Metal Ions with Nucleotides, Nucleic Acids, and Their Constituents (Eds.: A. Sigel, H. Sigel), Dekker, New York, 1996, pp. 1-814;
3. c) Metal Ions in Biological Sytems, Vol. 33: Probing of Nucleic Acids by Metal Ion Complexes of Small Molecules (Eds.: A. Sigel, H. Sigel), Dekker, New York, 1996, pp. 1-678.
4. a) H. R. Boume, D. A. Sanders, F. McCormick, Nature 1990, 348, 125-132;
5. b) D. G. Lambright, J. P. Noel, H. E. Hamm, P. B. Sigler, Nature 1994, 369, 621-628;
6. c) N. H. Keep, M. Barnes, I. Barsukov, R. Badii, L.-Y. Lian, A. W. Segal, P. C. E. Moody, G. C. K. Roberts, Structure 1997, 5, 623-633.
7. Many reviews exist on this topic; some examples are: a) "Gain-of-function Mutants. Ion Channels and G Protein-Coupled Receptors" H. A. Lester, A. Karschin, Annu. Rev. Neurosci. 2000, 23, 89-125;
8. b) "In vivo Modulation of G Proteins and Opioid Receptor Function by Antisense Oligodeoxynucleotides" J. Garzon, I. De Antonio, P. Sanchez-Blazquez, Methods Enzymol. B 2000, 314 B, 3-20;
9. c) "Odorant Receptors: A Plethora of G-Protein-Coupled Receptors" L. Dryer, A. Berghard, Trends Pharmacol. Sci. 1999, 20, 413-417;
10. d) "Regulation of the Cytoskeleton and Cell Adhesion by the Rho Family GTPases in Mammalian Cells" K. Kaibuchi, S. Kuroda, M. Amano, Annu. Rev. Biochem. 1999, 68, 459-486;
11. e) "A Cell's Sense of Direction" C. A. Parent, P. N. Devreotes, Science 1999, 284, 765-770;
12. f) "G Protein Regulation of Adenylate Cyclase" W. F. Simonds, Trends Phannacol. Sci. 1999, 20, 66-73;
13. g) "Rab GTPases, Directors of Vesicle Docking" F. Schimmoller, I. Simon, S. R. Pfeffer, J. Biol. Chem. 1998, 273, 22 161-22 164;
14. h) "G-Protein Diseases Furnish a Model for the Turn-on Switch" T. Iiri, Z. Farfel, H. R. Bourne, Nature 1998, 394, 35-38;
15. i) "Role of Small G Proteins in Yeast Cell Polarization and Wall Biosynthesis" E. Cabib, J. Drgonova, T. Drgon, Annu. Rev. Biochem. 1998, 67, 307-333;
16. j) "G Protein-Coupled Receptor Kinases" J. A. Pitcher, N. J. Freedman, R. J. Lefkowitz, Annu. Rev. Biochem. 1998, 67, 653-692;
17. k) "The G-Protein Nanomachine" D. E. Clapham, Nature 1996, 579, 297-299.
18. a) T. Kobayashi, K. Ikeda, H. Kojima, H. Niki, R. Yano, T. Yoshioka, T. Kumanishi, Nature Neuroscience 1999, 2, 1091-1097;
19. b) K. Wickman, D. E. Clapham, Physiol. Reviews 1995, 75, 865-885;
20. c) J. Y. Ma, M. Li, W. A. Catterall, T. Scheuer, Proc. Natl. Acad. Sci. USA 1994, 91, 12 351-12 355.
21. M. Suzuki, K. Takahashi, O. Sakai, J. Membr. Biol. 1994, 141, 43-50.
22. a) J. A. Rosado, S. O. Sage, Biochem. J. 2000, 347, 183-192;
23. b) J. W. Gysbers, S. Guarnieri, M. A. Mariggio, T. Pietrangelo, G. Fano, M. P. Rathbone, Neuroscience 2000, 96, 817-824.
24. a) S. W. Jeong, S. R. Ikeda, Proc. Natl. Acad. Sci. USA 2000, 97, 907-912;
25. b) M. Groysman, C. Shifrin, N. Russek, S. Katzav, FEBS Lett. 2000, 467, 75-80;
26. c) H. R. Mott, D. Owen, D. Nietlispach, P. N. Lowe, E. Manser, L. Lim, E. D. Laue, Nature 1999, 399, 384-388.
27. E. L. Watson, Crit. Rev. Oral Biol. Med. 1999, 10, 284-306.
28. a) A. E. Remmers, R. R. Neubig, J. Biol. Chem. 1996, 271, 4791-4797;
29. b) S. Grover, E. Hamel, Eur. J. Biochem. 1994, 222, 163-172;
30. c) S. Kaldenberg-Stasch, M. Baden, B. Fesseler, K. H. Jakobs, T. Wieland, Eur. J. Biochem. 1994, 221, 25-33.
31. a) G. H. Reed, R. R. Poyner, Met. Ions Biol. Syst. 2000, 37, 183-207;
32. b) J. D. Crowley, D. A. Traynor, D. C. Weatherburn, Met. Ions Biol. Syst. 2000, 37, 209-278;
33. c) T. Schweins, K. Scheffzek, R. Assheuer, A. Wittinghofer, J. Mol. Biol. 1997, 266, 847-856.
34. G. Auerbach, A. Herrmann, A. Bracher, G. Bader, M. Gütlich, M. Fischer, M. Neukamm, M. Garrido-Franco, J. Richardson, H. Nar, R. Huber, A. Bacher, Proc. Nat. Acad. Sci. USA 2000, 97, 13 567-13 572.
35. Handbook on Metalloproteins (Eds.: I. Bertini, A. Sigel, H. Sigel), Dekker, New York, 2001, pp. 1-1182.
36. H. R. Kalbitzer, Met. Ions Biol. Syst. 1987, 22, 81-103.
37. T. Maier, F. Lottspeich, A. Bock, Eur. J. Biochem. 1995, 230, 133-138.
38. C. Liu, Y. Suo, T. S. Leyh, Biochemistry 1994, 33, 7309-7314.
39. J. E. Coleman, D. P. Giedroc, Met. Ions Biol. Syst. 1989, 25, 171-234.
40. a) A. S. Mildvan, Magnesium 1987, 6, 28-33;
41. b) K. M. Downey, A. G. So, Met. Ions Biol. Syst. 1989, 25, 1-30;
42. c) C. Klevickis, C. M. Grisham, Met. Ions Biol. Syst. 1996, 32, 1-26; see ref. [1b].
43. F. Y.-H. Wu, W.-J. Huang, R. B. Sinclair, L. Powers, J. Biol. Chem. 1992, 267, 25 560-25 567.
44. a) D. Chatterji, F. Y.-H. Wu, Biochemistry 1982, 21, 4657-4664;
45. b) D. Chatterji, C.-W. Wu, F. Y.-H. Wu, J. Biol. Chem. 1984, 259, 284-289.
46. a) H. Sigel, ACS Symp. Ser. 1989, 402, 159-204;
47. b) H. Sigel, Chem. Soc. Rev. 1993, 22, 255-267.
48. H. Sigel, B. Song, Met. Ions Biol. Syst. 1996, 32, 135-205; see ref. [1b].
49. H. Sigel, Pure Appl. Chem. 1999, 71, 1727-1740.
50. R. B. Martin, Y. H. Mariam, Met. Ions Biol. Syst. 1979, 8, 57-124.
51. R. Tribolet, H. Sigel, Eur. J. Biochem. 1987, 163, 353-363.
52. K. Aoki, Met. Ions Biol. Syst. 1996, 32, 91-134; sec ref. [1b].
53. a) N. A. Corfù, R. Tribolet, H. Sigel, Eur. J. Biochem. 1990, 191, 721-735;
54. b) N. A. Corfù, H. Sigel, Eur. J. Biochem. 1991, 199, 659-669.
55. a) H. Sigel, J. Inorg. Nucl. Chem. 1977, 39, 1903-1911;
56. b) H. Sigel, J. Am. Chem. Soc. 1975, 97, 3209-3214.
57. R. M. Smith, A. E. Martell, Y. Chen, Pure Appl. Chem. 1991, 63, 1015-1080.
58. IUPAC Stability Constants Database, Release 3, Version 4.02 (compiled by: L. D. Pettit, H. K. J. Powell), Academic Software, Timble, Otley, West Yorkshire, UK, 1999.
59. NIST Critically Selected Stability Constants of Metal Complexes, Reference Database 46, Version 5.0 (compiled by: R. M. Smith, A. E. Martell), US Department of Commerce, National Institute of Standards and Technology, Gaithersburg, MD, USA, 1998.
60. Joint Expert Speciation System (JESS), Version 6.0 (joint venture by K. Murray, P. M. May), Division of Water Technology, CSIR, Pretoria, South Africa, and School of Mathematical and Physical Sciences, Murdoch University, Murdoch, Western Australia, 1999.
61. H. Sigel, R. Tribolet, R. Malini-Balakrishnan, R. B. Martin, Inorg. Chem. 1987, 26, 2149-2157.
62. H. Sigel, Eur. J. Biochem. 1987, 165, 65-72.
63. Y. H. Mariam, R. B. Martin, Inorg. Chim. Acta 1979, 35, 23-28.
64. K. H. Scheller, F. Hofstetter, P. R. Mitchell, B. Prijs, H. Sigel, J. Am. Chem. Soc. 1981, 103, 247-260.
65. a) M. D. Reily, T. W. Hambley, L. G. Marzilli, J. Am. Chem. Soc. 1988, 110, 2999-3007;
66. b) P. Annen, S. Schildberg, W. S. Sheldrick, Inorg. Chim. Acta 2000, 307, 115-124.
67. R. B. Martin, Met. Ions Biol. Syst. 1996, 32, 61-89; see ref. [1b].
68. [38b] a) H. Sigel, N. A. Corfù, L.-n. Ji, R. B. Martin, Comments Inorg. Chem. 1992, 13, 35-59;
69. b) L. E. Kapinos, A. Holý, J. Günter, H. Sigel, Inorg.Chem. 2001, 40, 2500-2508.
70. H. Sigel, S. S. Massoud, N. A. Corfù, J. Am. Chem. Soc. 1994, 116, 2958-2971.
71. H. Sigel, S. S. Massoud, R. Tribolet, J. Am. Chem. Soc. 1988, 110, 6857-6865.
72. a) R. Tribolet, H. Sigel, Eur. J. Biochem. 1988, 170, 617-626;
73. b) H. Sigel, Biol. Trace Elem. Res. 1989, 21, 49-59;
74. c) O. Yamauchi, A. Odani, H. Masuda, H. Sigel, Met. Ions Biol. Syst. 1996, 32, 207-270; see ref. [1b].
75. H. Sigel, E. M. Bianchi, N. A. Corfù, Y. Kinjo, R. Tribolet, R. B. Martin, J. Chem. Soc. Perkin Trans. 2, 2001, 507-511.
76. [43b] a) R. Cini, M. C. Burla, A. Nunzi, G. P. Polidori, P. F. Zanazzi, J. Chem. Soc. Dalton Trans. 1984, 2467-2476;
77. b) C. V. Grant, V. Frydman, L. Frydman, J. Am. Chem. Soc. 2000, 122, 11 743-11 744.
78. J. A. Cowan, Inorg Chem. 1991, 30, 2740-2747.
79. a) H. Sigel, D. B. McCormick, Acc. Chem. Res. 1970, 3, 201-208;
80. b) H. Sigel, K. Becker, D. B. McCormick, Biochim. Biophys. Acta 1967, 148, 655-664.
81. a) H. Irving, R. J. P. Williams, Nature 1948, 162, 746-747;
82. b) H. Irving, R. J. P. Williams, J. Chem. Soc. 1953, 3192-3210.
83. S. S. Massoud, H. Sigel, Inorg. Chem. 1988, 27, 1447-1453.
84. S. A. A. Sajadi, B. Song, F. Gregáň, H. Sigel, Inorg. Chem. 1999, 38, 439-448.
85. R. B. Martin, H. Sigel, Comments Inorg. Chem. 1988, 6, 285-314.
86. a) G. P. P. Kuntz, G. Kotowycz, Biochemistry 1975, 14, 4144-4150;
87. [35]
88. a) J. Reedijk, Chem. Commun. 1996, 801-806;
89. b) M. J. Bloemink, J. Reedijk, Met. Ions Biol. Syst. 1996, 32, 641-685; see ref. [1b].
90. a) J. P. Whitehead, S. J. Lippard, Met. Ions Biol. Syst. 1996, 32, 687-726; see ref. [1b];
91. b) P. M. Takahara, C. A. Frederick, S. J. Lippard, J. Am. Chem. Soc. 1996, 118, 12 309-12 321.
92. Cisplatin: Chemistry and Biochemistry of a Leading Anticancer Drug (Ed.: B. Lippert), VHCA, Zürich; Wiley-VCH, Weinheim, 1999, pp. 1-563, and references therein.
93. E. Sletten, N. Å. Frøystein, Met Ions Biol. Syst. 1996, 32, 397-418; see ref. [1b].
94. a) J. E. Wedekind, D. B. McKay, Nature Struct. Biol. 1999, 6, 261-268;
95. b) M. Katahira, M. H. Kim, T. Sugiyama, Y. Nishimura, S. Uesugi, Eur. J. Biochem. 1998, 255, 727-733;
96. c) C. G. Hoogstraten, P. Legault, A. Pardi, J. Mol. Biol. 1998, 284, 337-350;
97. d) P. Chartrand, N. Usman, R. Cedergren, Biochemistry 1997, 36, 3145-3150.
98. a) H. Sigel, A. D. Zuberbühler, O. Yamauchi, Anal. Chim. Acta 1991, 255, 63-72;
99. b) M. Bastian, H. Sigel, J. Coord. Chem. 1991, 23, 137-154.
100. H. Sigel, Coord. Chem. Rev. 1990, 100, 453-539.
101. R. Tribolet, R. Malini-Balakrishnan, H. Sigel, J. Chem. Soc. Dalton Trans. 1985, 2291-2303.
102. H. Sigel, R. Griesser, B. Prijs, Z. Naturforsch. 1972, 27B, 353-364.