Osmolytes Stabilize Ribonuclease S by Stabilizing Its Fragments S Protein and S Peptide to Compact Folding-competent States

Journal of Biological Chemistry

Volumn 276, Issue 31, 2001, Pages 28789-28798

  Ratnaparkhi, Girish S ^a,b,d   Varadarajan, Raghavan ^b,c  

^a TATA INSTITUTE OF FUNDAMENTAL RESEARCH   (India)

^b INDIAN INSTITUTE OF SCIENCE   (India)

^c JAWAHARLAL NEHRU CENTRE FOR ADVANCED SCIENTIFIC RESEARCH   (India)

^d UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CALORIMETRY; CONFORMATIONS; ENTROPY; PH EFFECTS; PROTEINS; TITRATION; X RAY CRYSTALLOGRAPHY;

CHEMICAL DENATURATION; OSMOLYTES;

BIOCHEMISTRY;

BETAINE; PEPTIDE; RIBONUCLEASE; RIBONUCLEASE A; RIBONUCLEASE S; RIBONUCLEASE S PRO; SARCOSINE; TAURINE; TRIMETHYLAMINE OXIDE; UNCLASSIFIED DRUG; VITRONECTIN; METHYLAMINE; OXIDIZING AGENT; PANCREATIC RIBONUCLEASE; PEPTIDE FRAGMENT; TRIMETHYLOXAMINE; TRYPSIN;

ARTICLE; CALORIMETRY; CRYSTAL STRUCTURE; ENTROPY; OSMOTIC PRESSURE; PH; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN DENATURATION; PROTEIN FOLDING; PROTEIN STABILITY; PROTEIN STRUCTURE; TEMPERATURE; TITRIMETRY; WATER STRUCTURE; X RAY CRYSTALLOGRAPHY; AMINO ACID SEQUENCE; CHEMICAL STRUCTURE; CHEMISTRY; ENZYME STABILITY; METABOLISM; MOLECULAR GENETICS; OSMOLARITY; PROTEIN SECONDARY STRUCTURE; THERMODYNAMICS;

AMINO ACID SEQUENCE; BETAINE; CALORIMETRY; CRYSTALLOGRAPHY, X-RAY; ENZYME STABILITY; METHYLAMINES; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; OSMOLAR CONCENTRATION; OXIDANTS; PEPTIDE FRAGMENTS; PROTEIN CONFORMATION; PROTEIN DENATURATION; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY; RIBONUCLEASE, PANCREATIC; RIBONUCLEASES; SARCOSINE; TAURINE; TEMPERATURE; THERMODYNAMICS; TRYPSIN;

EID: 0035800731     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M101906200     Document Type: Article

References (59)

1. Yancey, P. H., Clark, M. E., Hand, S. C., Bowlus, R. D., and Somero, G. N. (1982) Science 217, 1214-1222
2. Arakawa, T., and Timasheff, S. N. (1985) Biophys. J. 47, 411-414
3. Santoro, M. M., Liu, Y., Khan, S. M., Hou, L. X., and Bolen, D. W. (1992) Biochemistry 31, 5278-5283
4. Plaza del Pino, I. M., and Sanchez-Ruiz, J. M. (1995) Biochemistry 34, 8621-8630
5. Liu, Y., and Bolen, D. W. (1995) Biochemistry 34, 12884-12891
6. Xie, G., and Timasheff, S. N. (1997) Protein Sci. 6, 211-221
7. Yancey, P. H., and Somero, G. N. (1979) Biochem. J. 183, 317-323
8. Lin, T. Y., and Timasheff, S. N. (1994) Biochemistry 33, 12695-12701
9. Kim, E. E., Varadarajan, R., Wyckoff, H. W., and Richards, F. M. (1992) Biochemistry 31, 12304-12314
10. Chakshusmathi, G., Ratnaparkhi, G. S., Madhu, P. K., and Varadarajan, R. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 7899-7904
11. Varadarajan, R., and Richards, F. M. (1992) Biochemistry 31, 12315-12327
12. Ratnaparkhi, G. S., and Varadarajan, R. (2000) Biochemistry 39, 12365-12374
13. Mitchinson, C., and Baldwin, R. L. (1986) Proteins 1, 23-33
14. Kim, P. S., and Baldwin, R. L. (1984) Nature 307, 329-334
15. Richards, F. M., and Wycoff, H. W. (1971) The Enzymes 4, 647-806
16. Goldberg, J. M., and Baldwin, R. L. (1998) Biochemistry 37, 2556-2563
17. Connelly, P. R., Varadarajan, R., Sturtevant, J. M., and Richards, F. M. (1990) Biochemistry 29, 6108-6114
18. Goldberg, J. M., and Baldwin, R. L. (1998) Biochemistry 37, 2546-2555
19. Ratnaparkhi, G. S., and Varadarajan, R. (1999) Proteins 36, 282-294
20. Nadig, G., Ratnaparkhi, G. S., Varadarajan, R., and Vishveshwara, S. (1996) Protein Sci. 5, 2104-2114
21. Thomson, J., Ratnaparkhi, G. S., Varadarajan, R., Sturtevant, J. M., and Richards, F. M. (1994) Biochemistry 33, 8587-8593
22. Catanzano, F., Giancola, C., Graziano, G., and Barone, G. (1996) Biochemistry 35, 13378-13385
23. Chakravarty, S., Mitra, N., Queitsch, I., Surolia, A., Varadarajan, R., and Dubel, S. (2000) FEBS Lett. 476, 296-300
24. Fontana, A., Polverino de Laureto, P., De Filippis, V., Scaramella, E., and Zambonin, M. (1997) Fold Des. 2, R17-R26
25. Allende, J. E., and Richards, F. M. (1962) Biochemistry 1, 295-304
26. Ozer, I. (1998) Anal. Biochem. 264, 199-203
27. Connolly, M. L. (1983) Science 221, 709-713
28. Chakravarty, S., and Varadarajan, R. (1999) Structure Fold. Des. 7, 723-732
29. Pattabiraman, N., Ward, K. B., and Fleming, P. J. (1995) J. Mol. Recognit. 8, 334-344
30. Ratnaparkhi, G. S., Ramachandran, S., Udgaonkar, J. B., and Varadarajan, R. (1998) Biochemistry 37, 6958-6966
31. Varadarajan, R., Connelly, P. R., Sturtevant, J. M., and Richards, F. M. (1992) Biochemistry 31, 1421-1426
32. Ganesh, C., Shah, A. N., Swaminathan, C. P., Surolia, A., and Varadarajan, R. (1997) Biochemistry 36, 5020-5028
33. Kurapkat, G., Kruger, P., Wollmer, A., Fleischhauer, J., Kramer, B., Zobel, E., Koslowski, A., Botterweck, H., and Woody, R. W. (1997) Biopolymers 41, 267-287
34. Woody, R. W., and Dunker, K. A. (1990) Plenum Press, New York, pp. 109-158
35. Pflumm, M. N., and Beychock, S. (1969) J. Biol. Chem. 244, 3973-3981
36. Ooi, T., Rupley, J. A., and Scheraga, H. A. (1963) Biochemistry 2, 432-437
37. Persichetti, R. A., StClair, N. L., Griffith, J. P., Navia, M. J., and Margolin, A. L. (1994) J. Am. Chem. Soc. 117, 2732-2737
38. Zelinski, T., and Waldmann, H. (1997) Agnew Chem. Int. Ed. Engl. 36, 722-724
39. Maniken, M. W., and Fink, A. L. (1977) Annu. Rev. Biophys. Bioeng. 6, 301-343
40. Timasheff, S. N. (1995) Methods Mol. Biol 40, 253-269
41. Xie, G., and Timasheff, S. N. (1997) Protein Sci. 6, 222-232
42. Knapp, S., Ladenstein, R., and Galinski, E. A. (1999) Extremophiles 3, 191-198
43. Wang, A., Robertson, A. D., and Bolen, D. W. (1995) Biochemistry 34, 15096-15104
44. Foord, R. L., and Leatherbarrow, R. J. (1998) Biochemistry 37, 2969-2978
45. Knubovets, T., Osterhout, J. J., Connolly, P. J., and Klibanov, A. M. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 1262-1267
46. Frye, K. J., and Royer, C. A. (1997) Protein Sci. 6, 789-793
47. Zhang, W., Capp, M. W., Bond, J. P., Anderson, C. F., and Record, M. T., Jr. (1996) Biochemistry 36, 10506-10516
48. Courtenay, E. S., Capp, M. W., Anderson, C. F., and Record, M. T. (2000) Biochemistry 39, 4455-4471
49. Arakawa, T., Bhat, R., and Timasheff, S. N. (1990) Biochemistry 29, 1924-1931
50. Baskakov, I., and Bolen, D. W. (1998) J. Biol. Chem. 273, 4831-4834
51. Baskakov, I. V., Kumar, R., Srinivasan, G., Ji, Y. S., Bolen, D. W., and Thompson, E. B. (1999) J. Biol. Chem. 274, 10693-10696
52. Qu, Y., Bolen, C. L., and Bolen, D. W. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 9268-9273
53. Kendrick, B. S., Chang, B. S., Arakawa, T., Peterson, B., Randolph, T. W., Manning, M. C., and Carpenter, J. F. (1997) Proc. Natl. Acad. Sci. U. S. A. 94, 11917-11922
54. Yang, D. S., Yip, C. M., Huang, T. H., Chakrabartty, A., and Fraser, P. E. (1999) J. Biol. Chem. 274, 32970-32974
55. Anjum, F., Rishi, V., and Ahmad, F. (2000) Biochim. Biophys. Acta 1476, 75-84
56. Burton, R. E., Hunt, J. A., Fierke, C. A., and Oas, T. G. (2000) Protein Sci. 9, 776-785
57. Ratnaparkhi, G. S., Awasthi, S., Rani, P., Balaram, P., and Varadarajan, R. (2000) Protein Eng. 13, 697-702
58. Dill, K. A. (1990) Biochemistry 29, 7133-7155
59. Doig, A. J., and Williams, D. H. (1991) J. Mol. Biol. 217, 389-398