Prediction of many new exons and introns in Plasmodium falciparum chromosome 2

Molecular and Biochemical Parasitology

Volumn 118, Issue 2, 2001, Pages 187-199

  Huestis, Robert ^a   Fischer, Katja ^b,c  

^a MONASH UNIVERSITY   (Australia)

^b Australian Centre for Tropical Health and Nutrition   (Australia)

^c QIMR BERGHOFER MEDICAL RESEARCH INSTITUTE   (Australia)

Author keywords

Chromosome 2; Clag; Exons; Gene annotation; Gene prediction; Homology; Introns; Malaria; Pfagss; Plasmodium falciparum; SERA; Splice sites; STEVOR; TIGR

Indexed keywords

ARTICLE; CHROMOSOME; CODON; COMPUTER ANALYSIS; CONTROLLED STUDY; EXON; GENE STRUCTURE; GENOME; INTRON; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PLASMODIUM FALCIPARUM; PREDICTION; PRIORITY JOURNAL; PROTEIN ANALYSIS; SEQUENCE HOMOLOGY; UNTRANSLATED REGION;

PLASMODIUM FALCIPARUM;

EID: 0035662309     PISSN: 01666851     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0166-6851(01)00376-0     Document Type: Article

References (32)

1. Chromosome 2 sequence of the human malaria parasite Plasmodium falciparum
2. The complete nucleotide sequence of chromosome 3 of Plasmodium falciparum
3. Evaluation of gene structure prediction programs
4. Interpolated Markov models for eukaryotic gene finding
5. Predicting internal exons by oligonucleotide composition and discriminant analysis of spliceable open reading frames
6. Genes and the physics of the DNA double helix
7. The physics of DNA and the annotation of the Plasmodium falciparum genome
8. Conserved sequences flank variable tandem repeats in two S-antigen genes of Plasmodium falciparum
9. A review: Molecular biology of malaria parasites
10. The Index of Coincidence and Its Applications in Cryptography
11. An algorithm to predict 3′ intron splice sites in Plasmodium falciparum genomic sequences
12. BKV splice sequences based on analysis of preferred donor and acceptor sites
13. A catalogue of splice junction sequences
14. Codon usage in Plasmodium falciparum
15. Compositional properties of nuclear genes from Plasmodium falciparum
16. Analysis of the sequences flanking the translational start sites of Plasmodium falciparum
17. Comparison of introns in a cdc2-homologous gene within a number of Plasmodium species
18. Human malaria parasites in continuous culture
19. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction
20. The exosome: A conserved eukaryotic RNA processing complex containing multiple 3′→5′ exoribonucleases
21. The RING finger domain: A recent example of a sequence-structure family
22. A member of the Plasmodium falciparum Pf60 multigene family codes for a nuclear protein expressed by readthrough of an internal stop codon
23. In vitro translation of Plasmodium falciparum aldolase is not initiated at an unusual site
24. Current status of the Plasmodium falciparum genome project
25. The sequence of clag 9, a subtelomeric gene of Plasmodium falciparum, is highly conserved
26. Structure and expression of the Plasmodium falciparum SERA gene
27. The sequence of a 200 kb portion of a Plasmodium vivax chromosome reveals a high degree of conservation with Plasmodium falciparum chromosome 3
28. [The genes] stevor and rif are Plasmodium falciparum multicopy gene families which potentially encode variant antigens