Stem cell dogmas in the genomics era

Reviews in Clinical and Experimental Hematology

Volumn 5, Issue 1, 2001, Pages 15-25

  Lemischka, Ihor ^a  

^a PRINCETON UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENE PRODUCT;

CELL DIFFERENTIATION; CELL MATURATION; CENTRAL NERVOUS SYSTEM; CLONAL VARIATION; GENE EXPRESSION; GENOMICS; HEMATOPOIETIC STEM CELL; HUMAN; NONHUMAN; REVIEW; STEM CELL;

ANIMALS; CELL DIFFERENTIATION; CELL DIVISION; GENE EXPRESSION PROFILING; HEMATOPOIETIC STEM CELLS; HUMANS;

EID: 0035273648     PISSN: 11270020     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1468-0734.2001.00030.x     Document Type: Review

References (86)

1. Fuchs E and Segre J. Stem cells: A new lease on life. Cell, 100: 143-155, 2000.
2. Weissman I. Stem cells: Units of development, units of regeneration, and units in evolution. Cell, 100: 157-168, 2000.
3. Watt F and Hogan B. Out of Eden: Stem cells and their niches. Science, 287: 1427-1430, 2000.
4. Morrison SI, Shall NM, Anderson DJ. Regulatory mechanisms in stem cell biology. Cell, 88: 287-298, 1997.
5. Abramson S, Miller R, Phillips R. The identification in adult bone marrow of pluripotent and restricted stem cells of the myeloid and lymphoid systems. J Exp Med, 145: 1567-1579, 1977.
6. Harrison DE, Jordan CT, Zhong RK, Astle CM. Primitive hematopoietic stem cells: Direct assay of most productive populations by competitive repopulation with simple binomial, correlation and covariance calculations. Exp Hematol, 21: 206-219, 1993.
7. Baum CM, Weissman IL, Tsukamoto AS, et al. Isolation of a candidate human hematopoietic stem cell population. Proc Natl Acad Sci USA, 89: 2804, 1992.
8. Bauman JG, de Vries P, Pronk B, Visser JV. Purification of murine hematopoietic stem cells and committed progenitors by fluorescence activated cell sorting using wheat germ agglutin and monoclonal antibodies. Acta Histochemica, 36: 241-253, 1988.
9. Bhatia M, Wang JC, Kapp U, et al. Purification of primitive human hematopoietic cells capable of repopulating immune-deficient mice. Proc Natl Acad Sci USA, 94: 5320-5325, 1997.
10. Goodell M, Brose K, Paradis G, et al. Isolation and functional properties of murine hematopoietic stem cells that are replicating in vivo. J Exp Med, 183: 1797-1806, 1996.
11. Jones R, Wagner JE, Celano P, et al. Separation of pluripotent hematopoietic stem cells from spleen colony-forming cells. Nature, 347: 188-189, 1990.
12. Jones R, Collector MI, Barber JP, et al. Characterization of mouse lymphohematopoietic stem cells lacking spleen colony-forming activity. Blood, 88: 487-491, 1996.
13. Jordan CT, McKearn J, Lemischka IR. Cellular and developmental properties of fetal hematopoietic stem cells. Cell, 61: 953-963, 1990.
14. Li CL and Johnson GR. Rhodamine123 reveals heterogeneity within murine Lin-, Sca+ hematopoietic stem cells. J Exp Med, 175: 1443, 1992.
15. Morrison SJ and Weissman IL. The long-term repopulating subset of hematopoietic stem cells is deterministic and isolatable by phenotype. Immunity, 1: 661-673, 1994.
16. Morrison SJ and Weissman IL. Heterogeneity of hematopoietic stem cells: Implications for clinical applications. Proc Assoc Am Physicians, 107: 187-194, 1995.
17. Morrison SJ, Hemmati HD, Wandycz AM, Weissman IL. The purification and characterization of fetal liver hematopoietic stem cells. Proc Natl Acad Sci USA, 92: 10302-10306, 1995.
18. Morrison SJ, Wandycz AM, Hemmati HD, et al. Identification of a lineage of multipotent hematopoietic progenitors. Development, 124: 1929-1939, 1997.
19. Neben S, Anklesaria P, Greenberger J, Mauch P. Quantitation of murine hematopoietic stem cells in vitro by limiting-dilution analysis of cobblestone area formation on a clonal stromal cell line. Exp Hematol, 21: 438-443, 1993.
20. Osawa M, Hanada K, Hamada H, Nakauchi H. Long-term lymphohematopoietic reconstitution by a single CD34-low/negative hematopoietic stem cell. Science, 273: 242-245, 1996.
21. Lemischka IR. What we have learned from retroviral marking of hematopoietic stem cells. Curr Top Microbiol Immunol, 177: 59-71, 1992.
22. Metcalf D, Nicola N, Robb L. Differentiation commitment in normal hemopoiesis and leukemic transformation. J Cell Physiol, 173: 131-134, 1997.
23. Smith LG, Weissman IL, Heimfeld S. Clonal analysis of hematopoietic stem-cell differentiation in vivo. Proc Natl Acad Sci USA, 88: 2788-2792, 1991.
24. Spangrude GJ. The pre-spleen colony forming unit assay: Measurement of spleen colony-forming unit regeneration. Curr Top Microbiol Immunol, 177: 31-39, 1992.
25. Siminovitch L, McCulloch E, Till J. The distribution of colony-forming cells among spleen colonies. J Cell Physiol, 62: 327-336, 1963.
26. Till J and McCulloch E. A direct measurement of the radiation sensitivity of mouse bone marrow cells. Radiat Res, 14: 213-222, 1961.
27. Till J and McCulloch E. The 'f-factor' of the spleen-colony assay for hemo-poietic stem cells. Ser Haematol, 5: 15-21, 1972.
28. Wu A, Till JE, Siminovitch L, McCulloch EA. A cytological study of the capacity for differentiation of normal hemopoietic colony-forming cells. J Cell Physiol, 69: 177-184, 1967.
29. Wu A, Siminovitch L, Till JE, McCulloch EA. Evidence for a relationship between mouse hemopoietic stem cells and cells forming colonies in culture. Proc Natl Acad Sci USA, 59: 1209-1215, 1968.
30. Wu A, Till JE, Siminovitch L, McCulloch EA. Cytological evidence for a relationship between normal hematopoietic colony-forming cells and cells of the lymphoid system. J Exp Med, 127: 455-464, 1968.
31. Dexter TM and Spooncer E. Growth and differentiation in the hemopoietic system. Annu Rev Cell Biol, 3: 423-441, 1987.
32. Hao QL, Thiemann FT, Petersen D, et al. Extended long-term culture reveals a highly quiescent and primitive human hematopoietic progenitor population. Blood, 88: 3306-3313, 1996.
33. Hirayama F, Shih JP, Awgulewitsch A, et al. Clonal proliferation of murine lymphohemopoietic progenitors in culture. Proc Natl Acad Sci USA, 89: 5907-5911, 1992.
34. Hirayama F, Aiba Y, Ikebuchi K, et al. Differentiation in culture of murine primitive lymphohematopoietic progenitors toward T-cell lineage. Blood, 93: 4187-4195, 1999.
35. Ploemacher RE, van der Sluijs JP, Voerman JS, Brons NH. An in vitro limiting-dilution assay of long-term repopulating hematopoietic stem cells in the mouse. Blood, 74: 2755, 1989.
36. Ploemacher RE, van der Sluijs JP, van Beurden CA, et al. Use of limiting-dilution type long-term marrow cultures in frequency analysis of marrow-repopulating and spleen colony-forming hematopoietic stem cells in the mouse. Blood, 78: 2527-2533, 1991.
37. Trevisan M, Yan X-Q, Iscove NN. Cycle initiation and colony formation in culture by murine marrow cells with long-term reconstituting potential in vivo. Blood, 88: 4149-4158, 1996.
38. Weilbaecher K, Weissman I, Blume K, Heimfeld S. Culture of phenotypically defined hematopoietic stem cells and other progenitors at limiting-dilution on dexter monolayers. Blood, 78: 945-952, 1991.
39. Pittenger M, Mackay AM, Beck SC, et al. Multilineage potential of adult human mesenchymal stem cells. Science, 284: 143-147, 1999.
40. Prockop D. Marrow stromal cells as stem cells for nonhematopoietic tissues. Science, 276: 71-74, 1997.
41. Lipton B and Schultz E. Developmental fate of skeletal muscle satellite cells. Science, 205: 1292-1294, 1979.
42. Schultz E and McCormick K. Skeletal muscle satellite cells. Rev Physiol Biochem Pharmacol, 123: 213-257, 1994.
43. Seale P and Rudnicki M. A new look at the origin, function, and 'stem-cell' status of muscle satellite cells. Dev Biol, 218: 115-124, 2000.
44. Yamanouchi K, Soeta C, Suzuki S, et al. Identification of skeletal muscle satellite cells by transfecting EGFP driven by skeletal alpha-actin promoter. J Vet Med Sci, 62: 1213-1216, 2000.
45. Yoon P, Kao R, Magovern G. Myocardial regeneration. Transplanting satellite cells into damaged myocardium. Texas Heart Inst J, 22: 119-125, 1995.
46. Zhang M and McLennan I. Use of antibodies to identify satellite cells with a light microscope. Muscle Nerve, 17: 987-994, 1994.
47. Cossu G, De Angelis L, Borello U, et al. Determination, diversification and multipotency of mammalian myogenic cells. Int J Dev Biol, 44: 699-706, 2000.
48. Beauchamp J, Morgan JE, Pagel CN, Partridge TA. Dynamics of myoblast transplantation reveal a discrete minority of precursors with stem cell-like properties as the myogenic source. J Cell Biol, 144: 1113-1122, 1999.
49. Seale P, Sabourin LA, Girgis-Gabardo A, et al. Pax7 is required for the specification of myogenic satellite cells. Cell, 102: 777-786, 2000.
50. Gussoni E, Soneoka Y, Strickland CD, et al. Dystrophin expression in the mdx mouse restored by stem cell transplantation. Nature, 401: 390-394, 1999.
51. Jackson KA, Mi T, Goodell MA. Hematopoietic potential of stem cells isolated from murine skeletal muscle. Proc Natl Acad Sci USA, 96: 14482-14486, 1999.
52. Ferrari G, Cusella-De Angelis G, Coletta M, et al. Muscle regeneration by bone marrowderived myogenic progenitors. Science, 279: 1528-1530, 1998.
53. Bjornson CR, Rietze RL, Reynolds BA, et al. Turning brain into blood: A hematopoietic fate adopted by adult neural stem cells in vivo. Science, 283: 534-537, 1999.
54. Galli R, Borello U, Gritti A, et al. Skeletal myogenic potential of human and mouse neural stem cells. Nature Neurosci, 3: 986-991, 2000.
55. Clarke DL, Johansson CB, Wilbertz J, et al. Generalized potential of adult neural stem cells. Science, 288: 1660-1663, 2000.
56. Brazelton T, Rossi FM, Keshet GI, Blau HM. From marrow to brain: Expression of neuronal phenotypes in adult mice. Science, 290: 1775-1779, 2000.
57. Mezey E, Chandross KJ, Harta G, et aL Turning blood into brain: Cells bearing neuronal antigens generated in vivo from bone marrow. Science, 290: 1779-1782, 2000.
58. Lagasse E, Connors H, Al-Dhalimy M, et al. Purified hematopoietic stem cells can differentiate into hepatocytes in vivo. Nature Med, 6: 1229-1234, 2000.
59. Theise ND, Nimmakayalu M, Gardner R, et al. Liver from bone marrow in humans. Hepatology, 32: 11-16, 2000.
60. Theise ND, Badve S, Saxena R, et al. Derivation of hepatocytes from bone marrow cells in mice after radiation-induced myeloablation. Hepatology, 31: 235-240, 2000.
61. Lemischka IR. The power of stem cells reconsidered? Proc Natl Acad Sci USA, 96: 14193-14195, 1999.
62. Kondo T and Raff M. Oligodendrocyte precursor cells reprogrammed to become multipotential CNS stem cells. Science, 289: 1754-1757, 2000.
63. Uchida N, Fleming WH, Alpern EJ, Weissman IL. Heterogeneity of hematopoietic stem cells. Curr Opin Immunol, 5: 177-184, 1993.
64. Enver T and Greaves M. Loops, lineage, and leukemia. Cell, 94: 9-12, 1998.
65. Hu M, Krause D, Greaves M, et al. Multiline-age gene expression precedes commitment in the hemopoietic system. Genes Dev, 11: 774-785, 1997.
66. Lemischka IR. Searching for stem cell regulatory molecules: Some general thoughts and possible approaches. Ann N Y Acad Sci, 872: 274-287, 1999.
67. Shivdasani RA and Orkin SH. The transcriptional control of hematopoiesis. Blood, 87: 4025-4039, 1996
68. Alon U, Surette MG, Barkai N, Leibler S. Robustness in bacterial chemotaxis. Nature, 397: 168-171, 1999.
69. Weng G, Bhalla U, Iyengar R. Complexity in biological signaling systems. Science, 284: 92-96, 1999.
70. Mao M, Fu G, Wu JS, et al. Identification of genes expressed in human CD34+ hematopoietic stem/progenitor cells by expressed sequence tags and efficient full-length cDNA cloning. Proc Natl Acad Sci USA, 95: 8175-8180, 1998.
71. Yang Y, Peterson KR, Stamatoyannopoulos G, Papayannopoulou T. Human CD34+ cell EST database: Single-pass sequencing of 402 clones from a directional cDNA library. Exp Hematol, 24: 605-612, 1996.
72. Diatchenko L, Lau YF, Campbell AP, et al. Suppression subtractive hybridization: A method for generating differentially regulated or tissue-specific cDNA probes and libraries. Proc Natl Acad Sci USA, 93: 6025-6030, 1996.
73. Hubank M and Schatz D. cDNA representational difference analysis: A sensitive and flexible method for identification of differentially expressed genes. Methods Enzymol, 303: 325-349, 1999.
74. 3H1 cells by subtractive hybridization. Biotechniques, 16: 722-729, 1994.
75. Phillips RL, Ernst RE, Brunk B, et al. The genetic program of hematopoietic stem cells. Science, 288: 1635-1640, 2000.
76. The chipping forecast. Nature Genet, 21: 1999.
77. Alon U, Barkai N, Notterman DA, et al. Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide arrays. Proc Natl Acad Sci USA, 96: 6745-6750, 1999.
78. Bassett DE, Eisen M, Boguski M. Gene expression informatics - It's all in your mine. Nature Genet, 21: 51-55, 1999.
79. Brown P and Botstein D. Exploring the new world of the genome with DNA microarrays. Nature Genet, 21: 33-37, 1999.
80. Cheung V, Morley M, Aguilar F, et al. Making and reading microarrays. Nature Genet, 21: 15-19, 1999.
81. Duggan D, Bittner M, Chen Y, et al. Expression profiling using cDNA microarrays. Nature Genet, 21: 10-14, 1999.
82. Eisen M, Spellman PT, Brown PO, Botstein D. Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA, 95: 14863-14868, 1998.
83. Iyer VR, Eisen MB, Ross DT, et al. The transcriptional program in the response of human fibroblasts to serum. Science, 283: 83-87, 1999.
84. Rogge L, Bianchi E, Biffi M, et al. Transcript imaging of the development of human T helper cells using oligonucleotide arrays. Nature Genet, 25: 96-101, 2000.
85. Tamayo P, Slonim D, Mesirov J, et al. Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation. Proc Natl Acad Sci USA, 96: 2907-2912, 1999.
86. Zhang L, Zhou W, Velculescu VE, et al. Gene expression profiles in normal and cancer cells. Science, 276: 1268-1272, 1997.