A novel mitochondrial gene order in the crinoid echinoderm Florometra serratissima

Molecular Biology and Evolution

Volumn 18, Issue 1, 2001, Pages 61-73

  Scouras, Andrea ^a   Smith, Michael J ^a  

^a SIMON FRASER UNIVERSITY   (Canada)

Author keywords

Crinoid; Echinoderm phylogeny; Florometra; Mitochondrial gene rearrangements; mtDNA; Nucleotide composition bias

Indexed keywords

MITOCHONDRIAL DNA; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE DEHYDROGENASE; RIBOSOME RNA; TRANSFER RNA;

ARTICLE; DNA SEQUENCE; ECHINODERM; GENE MAPPING; GENE REARRANGEMENT; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PROMOTER REGION;

FLOROMETRA SERRATISSIMA;

EID: 0035148476     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a003720     Document Type: Article

References (86)

1. MOLPHY version 2.3: Programs for molecular phylogenetics based on maximum likelihood
2. Model of amino acid substitution in proteins encoded by mitochondrial DNA
3. Sequence and organization of the human mitochondrial genome
4. Mitochondrial gene rearrangement in the sea cucumber genus, Cucumaria
5. Nucleotide sequence and gene organization of the starfish Asterina pectinifera mitochondrial genome
6. Strand-specific nucleotide composition bias in echinoderm and vertebrate mitochondrial genomes
7. Animal mitochondrial DNA: An extreme example of genetic economy
8. The molecular phylogeny of five eastern North Pacific octopus species
9. A classification and phylogeny of post-Palaeozoic sea stars (Asteroidea: Echinodermata)
10. Parametric genome arrangement
11. Mitochondrial genomes and the phylogeny of mollusks
12. Complete DNA sequence of the mitochondrial genome of the black chiton, Katharina tunicata
13. Complete sequence of the mitochondrial DNA of the annelid worm Lumbricus terrestris
14. Big trees from little genomes: Mitochondrial gene order as a phylogenetic tool
15. Class-level relationships in the phylum Cnidaria: Evidence from mitochondrial genome structure
16. Structural conservation and variation in the D-loop-containing region of vertebrate mitochondrial DNA
17. The mitochondrial genome of animals
18. Simultaneous editing of multiple nucleic acid and protein sequences with ESEE, version 3.2
19. Duplication and remolding of tRNA genes during the evolutionary rearrangement of mitochondrial genomes
20. A novel gene order in the Paracentrotus lividus mitochondrial genome
21. The complete nucleotide sequence, gene organization, and genetic code of the mitochondrial genome of Paracentrotus lividus
22. The mitochondrial genome of the hemichordate Balanoglossus carnosus and the evolution of deuterostome mitochondria
23. Replication of animal mitochondrial DNA
24. Transcription of the mammalian mitochondrial genome
25. Replication and transcription of vertebrate mitochondrial DNA
26. Mitogenomics: Digging deeper with complete mitochondrial genomes
27. Complete sequence of the mitochondrial DNA in the sea urchin Arbacia lixula: Conserved features of the echinoid mitochondrial genome
28. Sequence and gene organization of the chicken mitochondrial genome. A novel gene order in higher vertebrates
29. Nucleotide sequence and evolution of coding and noncoding regions of a quail mitochondrial genome
30. Mutually exclusive synthetic pathways for sea urchin mitochondrial rRNA and mRNA
31. The mtDNA sequence of the ostrich and the divergence between paleognathous and neognathous birds
32. The complete mitochondrial genome of Rhea americana and early avian divergences
33. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
34. Ser(AGY) in starfish mitochondrial DNA
35. A novel mitochondrial genome organization for the blue mussel, Mytilus edulis
36. Conserved tRNA gene cluster in starfish mitochondrial DNA
37. Phylogenetic implications of genome rearrangement and sequence evolution in echinoderm mitochondrial DNA
38. Nucleotide sequence and gene organization of sea urchin mitochondrial DNA
39. Sea urchin egg mitochondrial DNA contains a short displacement loop (D-loop) in the replication origin region
40. The marsupial mitochondrial genome and the evolution of placental mammals
41. The complete mitochondrial genome of the wallaroo (Macropus robustus) and the phylogenetic relationship among Monotremata, Marsupialia, and Eutheria
42. Unbiased estimation of symmetrical directional mutation pressure from protein-coding DNA
43. Evidence from analyses of intergenic regions for strand-specific directional mutation pressure in metazoan mitochondrial DNA
44. Analysis of directional mutation pressure and nucleotide content in mitochondrial cytochrome b genes
45. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea
46. Maximum likelihood inference of protein phylogeny and the origin of chloroplasts
47. Variations in mitochondrial tRNA gene organization of reptiles as phylogenetic markers
48. Complete sequence of a sea lamprey (Petromyzon marinus) mitochondrial genome: Early establishment of the vertebrate genome organization
49. The interrelationships of the echinoderm classes: Morphological and molecular evidence
50. Recovering evolutionary trees under a more realistic model of sequence evolution
51. Animal mitochondrial DNA recombination
52. Two novel gene orders and the role of light-strand replication in rearrangement of the vertebrate mitochondrial genome
53. Construction of T-vectors, a rapid and general system for direct cloning of unmodified PCR products
54. Multiple independent origins of mitochondrial gene order in birds
55. Identification of initiation sites for heavy-strand and light-strand transcription in human mitochondrial DNA
56. The pattern of transcription of the human mitochondrial rRNA genes reveals two overlapping transcriptional units
57. Tandem duplication in animal mitochondrial DNAs: Variation in incidence and gene content among lizards
58. tRNA punctuation model of RNA processing in human mitochondria
59. The mitochondrial genomes of two nematodes, Caenorhabditis elegans and Ascaris suum
60. Recent evidence for evolution of the genetic code
61. Rearrangements of mitochondrial transfer RNA genes in marsupials
62. The early radiation and phylogeny of echinoderms
63. Mitochondrial gene order adjacent to the control region in crocodile, turtle, and tuatara
64. Sequence evolution in and around the mitochondrial control region in birds
65. DNA sequencing with chain-terminating inhibitors
66. Evolution of the WANCY region in amniote mitochondrial DNA
67. Codon usage in yeast: Cluster analysis clearly differentiates highly and lowly expressed genes
68. Fossil evidence for the relationships of extant echinoderm classes and their times of divergence
69. Comparative variation of morphological and molecular evolution through geological time: 28S ribosomal RNA versus morphology in echinoids
70. The phylogeny of echinoderm classes based on mitochondrial gene arrangements
71. Gene arrangement in sea star mitochondrial DNA demonstrates a major inversion event during echinoderm evolution
72. Nucleotide sequence of nine protein-coding genes and 22 tRNAs in the mitochondrial DNA of the sea star Pisaster ochraceus
73. Compilation of tRNA sequences and sequences of tRNA genes
74. Complete sequence of the amphioxus (Branchiostoma lanceolatum) mitochondrial genome: Relations to vertebrates
75. Structural compensation in atypical mitochondrial tRNAs
76. Ser to common three-dimensional constraints
77. Characterization of translational initiation sites in E. coli
78. Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies
79. On the genetic basis of variation and heterogeneity of DNA base composition
80. Yeast retrotransposons and tRNAs
81. Sequence and properties of the human KB cell and mouse L cell D-loop regions of mitochondrial DNA
82. Animal mitochondrial DNA: Structure and evolution
83. Evolution of pulmonate gastropod mitochondrial genomes: Comparisons of gene organizations of Euhadra, Cepaea and Albinaria and implications of unusual tRNA secondary structures
84. The nucleotide sequences of the heavy and light strand replication origins of the Rana catesbeiana mitochondrial genome
85. Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information