Mitochondrial gene rearrangement in the sea cucumber genus cucumaria

Molecular Biology and Evolution

Volumn 15, Issue 8, 1998, Pages 1009-1016

  Arndt, A ^a,b   Smith, M J ^a  

^a SIMON FRASER UNIVERSITY   (Canada)

^b UNIVERSITY OF LEUVEN   (Belgium)

Author keywords

Control region; Cucumaria miniata; Gene duplication; Mitochondrial DNA; tRNAs

Indexed keywords

TRANSFER RNA;

ARTICLE; ECHINODERM; ENZYME SUBUNIT; GENE CLUSTER; GENE DUPLICATION; GENE ORDER; GENE REARRANGEMENT; GENE SEQUENCE; GENETIC ORGANIZATION; MITOCHONDRIAL MEMBRANE; NONHUMAN; PHYLOGENY;

ASTEROIDEA; CUCUMARIA; CUCUMARIA MINIATA; CUCUMIS SATIVUS; ECHINODERMATA; ECHINOIDEA; HOLOTHUROIDEA; INVERTEBRATA; PARASTICHOPUS CALIFORNICUS;

EID: 0031904632     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a025999     Document Type: Article

References (22)

1. ARNDT, A., C. MARQUEZ, P. LAMBERT, and M. J. SMITH. 1996. Molecular phylogeny of eastern Pacific sea cucumbers (Echinodermata: Holothuroidea) based on mitochondrial DNA sequence. Mol. Phylogenet. Evol. 6:425-437.
2. BIRNBOIM, H. C. 1983. A rapid alkaline lysis extraction method for the isolation of plasmid DNA. Methods Enzymol. 100: 243-255.
3. CABOT, E. L., and A. T. BECKENBACH. 1989. Simultaneous editing of multiple nucleic acid and protein sequences with ESEE. Comput. Appl. Biosci. 5:233-234.
4. CANTATORE, P., M. N. GADALETA, M. ROBERTI, C. SACCONE, and A. C. WILSON. 1987. Duplication and remoulding of tRNA genes during the evolutionary rearrangement of mitochondrial genomes. Nature 329:853-855.
5. CANTATORE, P., M. ROBERTI, G. RENALDI, M. GADALETA, and C. SACCONE. 1989. The complete nucleotide sequence, gene organization, and genetic code of the mitochondrial genome of Paracentrotus lividus. J. Biol. Chem. 264:10965-10975.
6. DESJARDINS, P., and R. MORAIS. 1990. Sequence and gene organization of the chicken mitochondrial genome. A novel gene order in higher vertebrates. J. Mol. Biol. 212:599-634.
7. HART, M. W., M. BYRNE, and M. J. SMITH. 1997. Molecular phylogenetic analysis of life history evolution in asterinid starfish. Evolution 51:1846-1859.
8. HIMENO, H., H. MASAKI, T. KAWAI, T. OHTA, I. KUMAGAI, I. MIURA, and K. WATANABE. 1987. Unusual genetic codes and novel gene structure for tRNAAGYSer in starfish mtDNA. Gene 56:219-230.
9. JACOBS, H., S. ASAKAWA, T. ARAKI, K. MIKURA, M. J. SMITH, and K. WATANABE. 1989. Conserved tRNA gene cluster in starfish mitochondrial DNA. Curr. Genet. 15:193-206.
10. JACOBS, H. T., D. J. ELLIOTT, V. B. MATH, and A. FARQUHARSON. 1988. Nucleotide sequence and gene organization of sea urchin mitochondrial DNA. J. Mol. Biol. 202:185-217.
11. KUMAZAWA, Y., and M. NISHIDA. 1993. Sequence evolution of mitochondrial tRNA genes and deep-branch animal phylogenetics. J. Mol. Evol. 37:380-398.
12. KUMAZAWA, Y., H. OTA, M. NISHIDA, and T. OZAWA. 1996. Gene rearrangements in snake mitochondrial genomes: highly concerted evolution of control-region-like sequences duplicated and inserted into a tRNA gene cluster. Mol. Biol. Evol. 13:1242-1254.
13. MACEY, J. R., A. LARSON, N. B. ANANJEVA, Z. FANG, and T. J. PAPENFUSS. 1997. Two novel gene orders and the role of light-strand replication in rearrangement of the vertebrate mitochondrial genome. Mol. Biol. Evol. 14:91-104.
14. MORITZ, C. 1991. Evolutionary dynamics of mitochondrial duplications in parthenogenetic geckos, Heterodontia binoei. Science 129:221-230.
15. MORITZ, C., and W. M. BROWN. 1987. Tandem duplications in animal mitochondrial DNAs: variation in incidence and gene content among lizards. Proc. Natl. Acad. Sci. USA 84: 7183-7187.
16. MORITZ, C., T. E. DOWLING, and W. M. BROWN. 1987. Evolution of animal mitochondrial DNA: relevance for population biology and systematics. Annu. Rev. Ecol. Syst. 18: 269-292.
17. PÄÄBO, S., W. K. THOMAS, K. M. WHITFIELD, Y. KUMAZAWA, and A. C. WILSON. 1991. Rearrangements of mitochondrial transfer RNA genes in marsupials. J. Mol. Evol. 33:426-430.
18. SAIKI, R. K., D. H. GELFAND, S. STOEFFEL, S. J. SCHARF, R. HIGUCHI, G. T. HORN, K. B. MULLIS, and H. A. ERLICH. 1988. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239:487-491.
19. SMITH, M. J., A. ARNDT, S. GORSKI, and E. FAJBER. 1993. The phylogeny of echinoderm classes based on mitochondrial gene rearrangements. J. Mol. Evol. 36:545-554.
20. SMITH, M. J., D. K. BANFIELD, K. DOTEVAL, S. GORSKI, and D. J. KOWBEL. 1989. Gene arrangement in sea star mitochondrial DNA demonstrates a major inversion event during echinoderm evolution. Gene 76:181-185.
21. STANTON, D. J., L. L. DAEHLER, C. C. MORITZ, and W. M. BROWN. 1994. Sequences with the potential to form stem-and-loop structures are associated with coding region duplications in animal mitochondrial DNA. Genetics 137:233-241.
22. WOLSTENHOLME, D. R. 1992. Animal mitochondrial DNA: structure and evolution. Int. Rev. Cytol. 141:173-216.