Homology-based annotation yields 1,042 new candidate genes in the drosophila melanogaster genome

Nature Genetics

Volumn 27, Issue 3, 2001, Pages 337-340

  Gopal, Shuba ^a   Schroeder, Mark ^a   Pieper, Ursula ^a   Sczyrba, Alexander ^a   Aytekin Kurban, Gulriz ^a   Bekiranov, Stefan ^a   Eduardo Fajardo, J ^a   Eswar, Narayanan ^a   Sanchez, Roberto ^a   Sali, Andrej ^a   Gaasterland, Terry ^a  

^a ROCKEFELLER UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; DNA SEQUENCE; DROSOPHILA MELANOGASTER; EXPRESSED SEQUENCE TAG; GENE EXPRESSION; GENE STRUCTURE; GENOME; PRIORITY JOURNAL; PROTEIN STRUCTURE; SEQUENCE HOMOLOGY; STRUCTURE ANALYSIS; TRANSPOSON; VALIDATION PROCESS;

ANIMALS; DROSOPHILA MELANOGASTER; EXPRESSED SEQUENCE TAGS; GENES, INSECT; GENETIC TECHNIQUES; GENOME; HUMANS; INSECT PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID;

DROSOPHILA MELANOGASTER; MELANOGASTER;

EID: 0035096629     PISSN: 10614036     EISSN: None     Source Type: Journal    
DOI: 10.1038/85922     Document Type: Article

References (26)

1. The genome sequence of Drosophila melanogaster
2. A Drosophila complementary DNA resource
3. Prediction of complete gene structures in human genomic DNA
4. Finding the genes in genomic DNA
5. Genome annotation assessment in Drosophila melanogaster
6. Gene discovery in dbEST
7. Constructing multigenome views of whole microbial genomes
8. GenBank
9. The PDB data uniformity project
10. The complete genome of the hyperthermophilic bacterium Aquifex aeolicus
11. MAGPIE/EGRET annotation of the 2.9-Mb Drosophila melanogaster Adh region
12. Large-scale protein structure modeling of the Saccharomyces cerevisiae genome
13. ModBase: A database of comparative protein structure models
14. Evaluation of comparative protein structure modeling by MODELLER-3
15. Comparative protein structure modeling of genes and genomes
16. Genie - Gene finding in Drosophila melanogaster
17. The mammalian gene collection
18. Open-reading-frame sequence tags (OSTs) support the existence of at least 17,300 genes in C. elegans
19. Structural genomics: Beyond the human genome project
20. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
21. Ab initio gene finding in Drosophila genomic DNA
22. New features of the Blocks Database servers
23. The PROSITE database, its status in 1999
24. Iterated profile searches with PSI-BLAST - A tool for discovery in protein databases
25. Comparative protein modeling by satisfaction of spatial restraints
26. Pfam 3.1: 1313 Multiple alignments and profile HMMs match the majority of proteins