Dsl1p, an essential protein required for membrane traffic at the endoplasmic reticulum/Golgi interface in yeast

Traffic

Volumn 2, Issue 3, 2001, Pages 212-231

  VanRheenen, Susan M ^a,b   Reilly, Barbara A ^a   Chamberlain, Stormy J ^a,c   Waters, M Gerard ^a  

^a PRINCETON UNIVERSITY   (United States)

^b TUFTS UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c UNIVERSITY OF FLORIDA COLLEGE OF MEDICINE   (United States)

Author keywords

Dsl1p; Erv14p; Retrograde transport; Sec21p; Secretory pathway; Sly1p; Vesicular transport; Yeast

Indexed keywords

COATOMER PROTEIN; DOCKING PROTEIN; MEMBRANE PROTEIN; MUTANT PROTEIN;

ALLELE; ARTICLE; CELL VACUOLE; CELL VIABILITY; CONTROLLED STUDY; ELECTRON MICROSCOPY; ENDOPLASMIC RETICULUM; GENE FUNCTION; GENE MUTATION; GENE REPRESSION; GENETIC CODE; GENETIC SCREENING; GOLGI COMPLEX; MEMBRANE TRANSPORT; MOLECULAR WEIGHT; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN LOCALIZATION; PROTEIN TRANSPORT; TEMPERATURE SENSITIVITY; YEAST;

AMINO ACID SEQUENCE; CLONING, MOLECULAR; ENDOPLASMIC RETICULUM; FUNGAL PROTEINS; GOLGI APPARATUS; INTRACELLULAR MEMBRANES; MOLECULAR SEQUENCE DATA; MUTAGENESIS; OPEN READING FRAMES; PLASMIDS; PROTEIN TRANSPORT; RESTRICTION MAPPING; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS;

EID: 0035016821     PISSN: 13989219     EISSN: None     Source Type: Journal    
DOI: 10.1034/j.1600-0854.2001.020307.x     Document Type: Article

References (78)

1. Kaiser CA, Gimeno RE, Shaywitz DA. Protein secretion, membrane biogenesis, and endocytosis. In Pringle JR, Broach JR, Jones EW (Eds.), The Molecular and Cellular Biology of the Yeast Saccharomyces. Vol. 3: Cell Cycle and Cell Biology. Cold Spring Harbor: Cold Spring Harbor Laboratory Press, 1997: 91-229.
2. Barlowe C. COPII and selective export from the endoplasmic reticulum. Biochim Biophys Acta 1998;1404: 67-76.
3. Kuehn M, Herrmann J, Schekman R. COPII-cargo interactions direct protein sorting into ER-derived transport vesicles. Nature 1998;391: 187-190.
4. Springer S, Schekman R. Nucleation of COPII vesicular coat complex by endoplasmic reticulum to Golgi vesicle SNAREs. Science 1998;281: 698-700.
5. Peng R, Grabowski R, De Antoni A, Gallwitz D. Specific interaction of the yeast cis-Golgi syntaxin Sed5p and the coat protein complex II component Sec24p of endoplasmic reticulum-derived transport vesicles. Proc Natl Acad Sci USA 1999;96: 3751-3756.
6. Stamnes MA, Craighead MW, Hoe MH, Lampen N, Geromanos S, Tempst P, Rothman JE. An integral membrane component of coatomer-coated transport vesicles defines a family of proteins involved in budding. Proc Natl Acad Sci USA 1995;92: 8011-8015.
7. Fiedler K, Veit M, Stamnes MA, Rothman JE. Bimodal Interaction of coatomer with the p24 family of putative cargo receptors. Science 1996;273: 1396-1399.
8. Schimmöller F, Singer-Krüger B, Schröder S, Krüger U, Barlowe C, Riezman H. The absence of Emp24p, a component of ER-derived COPII-coated vesicles, causes a defect in transport of selected proteins to the Golgi. EMBO J 1995;14: 1329-1339.
9. Belden WJ, Barlowe C. Erv25p, a component of COPII-coated vesicles, forms a complex with Emp24p that is required for efficient endoplasmic reticulum to Golgi transport. J Biol Chem 1996;271: 26939-26946.
10. Elrod-Erickson MJ, Kaiser CA. Genes that control the fidelity of endoplasmic reticulum to Golgi transport identified as suppressors of vesicle budding mutations. Mol Biol Cell 1996;7: 1043-1058.
11. Marzioch M, Henthom DC, Herrmann JM, Wilson R, Thomas DY, Bergeron JJ, Solari RC, Rowley A. Erp1p and Erp2p, partners for Emp24p and Erv25p in a yeast p24 complex. Mol Biol Cell 1999;10: 1923-1938.
12. Springer S, Chen E, Duden R, Marzioch M, Rowley A, Hamamoto S, Merchant S, Schekman R. The p24 proteins are not essential for vesicular transport in Saccharomyces cerevisiae. Proc Natl Acad Sci USA 2000;97: 4034-4039.
13. Powers J, Barlowe C. Transport of Axl2p depends on Erv14p, an ER-vesicle protein related to the Drosophila cornichon gene product. J Cell Biol 1998;142: 1209-1222.
14. Söllner T. SNAREs and targeted membrane fusion. FEBS Lett 1995;369: 80-83.
15. Pelham HR. SNAREs and the secretory pathway - lessons from yeast. Exp Cell Res 1999;247: 1-8.
16. Söllner T, Whiteheart SW, Brunner M, Erdjument-Bromage H, Geromanos S, Tempst P, Rothman JE. SNAP receptors implicated in vesicle targeting and fusion. Nature 1993;362: 318-324.
17. McNew JA, Parlati F, Fukuda R, Johnston RJ, Paz K, Paumet F, Sollner TH, Rothman JE. Compartmental specificity of cellular membrane fusion encoded in SNARE proteins. Nature 2000;407: 153-159.
18. Nichols BJ, Ungermann C, Pelham. HR, Wickner WT, Haas A. Homotypic vacuolar fusion mediated by t- and v-SNAREs. Nature 1997;387: 199-202.
19. Weber T, Zemelman BV, McNew JA, Westermann B, Gmachl M, Parlati F, Sollner TH, Rothman JE. SNAREpins: minimal machinery for membrane fusion. Cell 1998;92: 759-772.
20. Parlati F, McNew JA, Fukuda R, Miller R, Sollner TH, Rothman JE. Topological restriction of SNARE-dependent membrane fusion. Nature 2000;407: 194-198.
21. Cao X, Barlowe C. Asymmetric requirements for a Rab GTPase and SNARE proteins in fusion of COPII vesicles with acceptor membranes. J Cell Biol 2000;149: 55-66.
22. Yang B, Gonzalez L Jr, Prekeris R, Steegmaier M, Advani RJ, Scheller RH. SNARE interactions are not selective: implications for membrane fusion specificity. J Biol Chem 1999;274: 5649-5653.
23. Fasshauer D, Antonin W, Margittai M, Pabst S, Jahn R. Mixed and non-cognate SNARE complexes: characterization of assembly and biophysical properties. J Biol Chem 1999;274: 15440-15446.
24. Schmitt HD, Wagner P, Pfaff E, Gallwitz D. The ras-related YPT1 gene product in yeast: a GTP-binding protein that might be involved in microtubule organization. Cell 1986;47: 401-412.
25. Nakajima H, Hirata A, Ogawa Y, Yonehara T, Yoda K, Yamasaki M. A cytoskeleton-related gene, USO1, is required for intracellular protein transport in Saccharomyces cerevisiae. J Cell Biol 1991;113: 245-260.
26. Sapperstein SK, Walter DM, Grosvenor AR, Heuser JE, Waters MG. p115 is a general vesicular transport factor related to the yeast ER-Golgi transport factor Uso1p. Proc Natl Acad Sci USA 1995;92: 522-526.
27. VanRheenen SM, Cao X, Sapperstein SK, Chiang EC, Lupashin VV, Barlowe C, Waters MG. Sec34p, a protein required for vesicle tethering to the yeast Golgi apparatus, is in a complex with Sec35p. J Cell Biol 1999;147: 729-742.
28. VanRheenen SM, Cao X, Lupashin VV, Barlowe C, Waters MG. Sec35p, a novel peripheral membrane protein, is required for ER to Golgi vesicle docking. J Cell Biol 1998;141: 1107-1119.
29. Kim DW, Sacher M, Scarpa A, Quinn AM, Ferro-Novick S. High-copy suppressor analysis reveals a physical interaction between Sec34p and Sec35p, a protein implicated in vesicle docking. Mol Biol Cell 1999;10: 3317-3329.
30. Sacher M, Jiang Y, Barrowman J, Scarpa A, Burston J, Zhang L, Schieltz D, Yates IJ, Abeliovich H, Ferro-Novick S. TRAPP, a highly conserved novel complex on the cis-Golgi that mediates vesicle docking and fusion. EMBO J 1998;17: 2494-2503.
31. Jones S, Newman C, Liu F, Segev N. The TRAPP complex is a nucleotide exchanger for Ypt1 and Ypt31/32. Mol Biol Cell 2000;11: 4403-4411.
32. Wang W, Sacher M, Ferro-Novick S. TRAPP stimulates guanine nucleotide exchange on Ypt1p. J Cell Biol 2000;151: 289-296.
33. Waters MG, Hughson F. Membrane tethering and fusion in the secretory and endocytic pathways. Traffic 2000;1: 588-597.
34. Barlowe C. Coupled ER to Golgi transport reconstituted with purified cytosolic components. J Cell Biol 1997;139: 1097-1108.
35. Cao X, Ballew N, Barlowe C. Initial docking of ER-derived vesicles requires Uso1p and Ypt1p but is independent of SNARE proteins. EMBO J 1998;17: 2156-2165.
36. Yamakawa H, Seog D-H, Yoda K, Yamasaki M, Wakabayashi T. Uso1 protein is a dimer with two globular heads and a long coiled-coil tail. J Struct Biol 1996;116: 356-365.
37. Dascher C, Ossig R, Gallwitz D, Schmitt HD. Identification and structure of four yeast genes (SLY) that are able to suppress the functional loss of YPT1, a member of the RAS superfamily. Mol Cell Biol 1991;11: 872-885.
38. Ossig R, Dascher C, Trepte HH, Schmitt HD, Gallwitz D. The yeast SLY gene products, suppressors of defects in the essential GTP-binding Ypt1 protein, may act in endoplasmic reticulum-to-Golgi transport. Mol Cell Biol 1991;11: 2980-2993.
39. Sapperstein SK, Lupashin VV, Schmitt HD, Waters MG. Assembly of the ER to Golgi SNARE complex requires Uso1p. J Cell Biol 1996;132: 755-767.
40. Pevsner J, Hsu SC, Braun JE, Calakos N, Ting AE, Bennett MK, Scheller RH. Specificity and regulation of a synaptic vesicle docking complex. Neuron 1994;13: 353-361.
41. Schulze KL, Littleton JT, Salzberg A, Halachmi N, Stem M, Lev Z, Bellen HJ. rop, a Drosophila homolog of yeast Sec1 and vertebrate n-Sec1/Munc-18 proteins, is a negative regulator of neurotransmitter release in vivo. Neuron 1994;13: 1099-1108.
42. Lupashin VV, Waters MG. t-SNARE activation through transient interaction with a Rab-like guanosine triphosphatase. Science 1997;276: 1255-1258.
43. Spang A, Schekman R. Reconstitution of retrograde transport from the Golgi to the ER in vitro. J Cell Biol 1998;143: 589-599.
44. Hosobuchi M, Kreis T, Schekman R. SEC21 is a gene required for ER to Golgi protein transport that encodes a subunit of a yeast coatomer. Nature 1992;360: 603-605.
45. Waters MG, Serafini T, Rothman JE. 'Coatomer': a cytosolic protein complex containing subunits of non-clathrin-coated Golgi transport vesicles. Nature 1991;349: 248-251.
46. Letoumeur F, Gaynor EC, Hennecke S, Demolliere C, Duden R, Emr SD, Riezman H, Cosson P. Coatomer is essential for retrieval of dilysine-tagged proteins to the endoplasmic reticulum. Cell 1994;79: 1199-1207.
47. Schekman R, Mellman I. Does COPI go both ways? Cell 1997;90: 197-200.
48. Orci L, Palmer DJ, Ravazzola M, Perrelet A, Amherdt M, Rothman JE. Budding from Golgi membranes requires the coatomer complex of non-clathrin coat proteins. Nature 1993;362: 648-652.
49. Bremser M, Nickel W, Schweikert M, Ravazzola M, Amherdt M, Hughes CA, Sollner TH, Rothman JE, Wieland FT. Coupling of coat assembly and vesicle budding to packaging of putative cargo receptors. Cell 1999;96: 495-506.
50. Conibear E, Stevens TH. Vps52p, Vps53p, and Vps54p form a novel multisubunit complex required for protein sorting at the yeast late Golgi. Mol Biol Cell 2000;11: 305-323.
51. Koshland D, Kent JC, Hartwell LH. Genetic analysis of the mitotic transmission of minichromosomes. Cell 1985;40: 393-403.
52. Hieter P, Mann C, Snyder M, Davis RW. Mitotic stability of yeast chromosomes: a colony color assay that measures nondisjunction and chromosome loss. Cell 1985;40: 381-392.
53. Boeke JD, LaCroute F, Fink GR. A positive selection for mutants lacking orotidine-5′-phosphate decarboxylase in yeast: 5-fluoroorotic acid resistance. Mol Gen Genetics 1934;197: 345-346.
54. Stevens T, Esmon B, Schekman R. Early stages in the yeast secretory pathway are required for transport of carboxypeptidase Y to the vacuole. Cell 1982;30: 439-448.
55. Rose MD, Novick P, Thomas JH, Botstein D, Fink GR. A Saccharomyces cerevisiae genomic plasmid bank based on a centromere-containing shuttle vector. Gene 1987;60: 237-243.
56. Brendel V, Bucher P, Nourbakhsh IR, Blaisdell BE, Karlin S. Methods and algorithms for statistical analysis of protein sequences. Proc Natl Acad Sci USA 1992;89: 2002-2006.
57. Sen-Gupta M, Guldener U, Beinhauer J, Fiedler T, Hegemann JH. Sequence analysis of the 33 kb long region between ORC5 and SUI1 from the left arm of chromosome XIV from Saccharomyces cerevisiae. Yeast 1997;13: 849-860.
58. Berger B, Wilson DB, Wolf E, Tonchev T, Milla M, Kim PS. Predicting coiled coils by use of pairwise residue correlations. Proc Natl Acad Sci USA 1995;92: 8259-8263.
59. Gammie AE, Brizzio V, Rose MD. Distinct morphological phenotypes of cell fusion mutants. Mol Biol Cell 1998;9: 1395-1410.
60. Fischer von Mollard G, Nothwehr SF, Stevens TH. The yeast v-SNARE Vti1p mediates two vesicle transport pathways through interactions with the t-SNAREs Sed5p and Pep12p. J Cell Biol 1997;137: 1511-1524.
61. Lupashin VV, Pokrovskaya ID, McNew JA, Waters MG. Characterization of a novel yeast SNARE protein implicated in Golgi retrograde traffic. Mol Biol Cell 1997;8: 2659-2676.
62. Kaiser CA, Schekman R. Distinct sets of SEC genes govern transport vesicle formation and fusion early in the secretory pathway. Cell 1990;61: 723-733.
63. Novick P, Field C, Schekman R. Identification of 23 complementation groups required for post-translational events in the yeast secretory pathway. Cell 1980;21: 205-215.
64. Roth S, Neuman-Silberberg FS, Barcelo G, Schupbach T. cornichon and the EGF receptor signaling process are necessary for both anterior-posterior and dorsal-ventral pattern formation in Drosophila. Cell 1995;81: 967-978.
65. Cosson P, Demolliere C, Hennecke S, Duden R, Letourneur F. Delta- and zeta-COP, two coatomer subunits homologous to clathrin-associated proteins, are involved in ER retrieval. EMBO J 1996;15: 1792-1798.
66. Duden R, Hosobuchi M, Hamamoto S, Winey M, Byers B, Schekman R. Yeast beta- and beta′-coat proteins (COP). Two coatomer subunits essential for endoplasmic reticulum-to-Golgi protein traffic. J Biol Chem 1994;269: 24486-24495.
67. Duden R, Kajikawa L, Wuestehube L, Schekman R. epsilon-COP is a structural component of coatomer that functions to stabilize alpha-COP. EMBO J 1998;17: 985-995.
68. Gaynor EC, Emr SD. COPI-independent anterograde transport: cargo-selective ER to Golgi protein transport in yeast COPI mutants. J Cell Biol 1997;136: 789-802.
69. Miller JH. Experiments in Molecular Genetics. Cold Spring Harbor: Cold Spring Harbor Laboratory Press, 1972.
70. Rose M, Winston F, Hieter P. Methods in Yeast Genetics. A Laboratory Course Manual. Cold Spring Harbor: Cold Spring Harbor Laboratory Press, 1990.
71. Wimmer C, Doye V, Grandi P, Nehrbass U, Hurt EC. A new subclass of nucleoporins that functionally interact with nuclear pore protein Nsp1. EMBO J 1992;11: 5051-5061.
72. Hanahan D. Studies on transformation of Escherichia coli with plasmids. J Mol Biol 1983;166: 557-580.
73. Elble R. A simple and efficient procedure for transformation of yeasts. BioTechniques 1992;13: 18-20.
74. Sikorski RS, Hieter P. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 1989;122: 19-27.
75. Rose MD. Modern and post-modern genetics in Saccharomyces cerevisiae. The Yeasts 1995;6: 69-120.
76. Leung D, Ellson C, Goeddel D. A method for random mutagenesis of a defined DNA segment using a modified polymerase chain reaction. Technique 1989;1: 11-15.
77. Muhlrad D, Hunter R, Parker R. A rapid method for localized mutagenesis of yeast genes. Yeast 1992;8: 79-82.
78. Reynolds ES. The use of lead citrate at high pH as an electron opaque stain in electron microscopy. J Cell Biol 1963;17: 208-212.