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Gal-YPT1 ΔYPT1::HIS his 4-619 ura3-52) was obtained from a cross of RSY272 and GFUI-6D. Genotypes were confirmed by complementation analysis. Genetic manipulations were performed as described [M. Rose, F. Winston, P. Hieter, Methods in Yeast Genetics: A Laboratory Course Manual (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 1990)].
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The plasmids used were as follows: pQE9-Ypt1 [full-length Bam HI-Eco RI YPT1 polymerase chain reaction (PCR) product was inserted into pQE9 (QIA-GEN)], pGST-Sed5 [Bam HI-Eco RI PCR product encoding the cytoplasmic domain of Sed5p was inserted into pGEX2T (Pharmacia)], pGEXSar1 (full-length GST-Sar1p fusion from R. Schekman), pGEX-Sec22 [Bam HI-Eco RI PCR product encoding the cytoplasmic domain of Sec22 was inserted into pGEX2T (Pharmacia) from R. Schekman]. pNB166 (YPT1 URA3, CEN) and pNB167 (YPT1 URA3, 2 μm) were from S. Ferro-Novick. pYCP50-SLV1-20 (SLY1-20, URA3, CEN) was from H. D. Schmitt. pSLY1-20 (SLY1-20, URA3, 2 μm) was constructed {Ace I-Cla I fragment of SLY1-20 inserted into pRS426 [R. S. Sikorski and P. Hieter, Genetics 122, 19 (1989)]} in our laboratory by S. K. Sapperstein.
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1842277899
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note
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The ypt1-3 allele was sequenced and had a C-to-A nucleotide change at position 284 of YPT1 (GenBank number D50617, open reading frame YFL038C), which results in a serine-to-tyrosine change at residue 95 of Ypt1p.
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Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
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6, GST-Sec22p, GST-Sly1p, or GST-Ypt1p and affinity-purified by standard techniques [E. Harlow and D. Lane, Antibodies: A Laboratory Manual (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, 1988)]. Antibodies to Bet1p were from R. Schekman.
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Antibodies: A Laboratory Manual
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Harlow, E.1
Lane, D.2
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35
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1842352866
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note
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Cells were grown to mid-logarithmic phase at 23°C in either synthetic complete (SC) or SC-Ura media supplemented with 1% casamino acids, harvested by centrifugation (5000g, 5 min), converted to spheroplasts (10), regenerated during a 20-min incubation in YP media (1% yeast extract, 2% peptone) with 1% glucose and 0.8 M sorbitol at 23°C, and lysed (10). The lysate was centrifuged at 15,000g for 15 min at 4°C. A 0.5-mg amount of supernatant protein (usually about 100 μl) was diluted to 1 ml in IP buffer [150 mM NaCl, 1% Triton X-100, 15 mM tris-HCl, (pH 7.5)] and mixed gently for 14 hours at 4°C with 15 μl of protein A-Sepharose beads bearing covalently attached affinity-purified antibodies (28) as indicated in the figure legends. The beads were washed four times with 1 ml of IP butter at 23°C, and eluted with 40 μl of 2% SDS at 90°C. The eluates were resolved by SDS-polyacrylamide gel electrophoresis (SDS-PAGE) (12% gel), electro-transferred onto polyvinylidene difluoride membrane, and probed with the indicated antibodies (28). Bound antibodies were visualized with chemiluminescent detection (Renaissance, DuPont NEN).
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1842381818
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note
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RSY255 and RSY271 spheroplasts (29) were incubated for 20 min at 23° or 38°C. sedimented, transferred to ice, and lysed in 20 mM Hepes-KOH (pH 7.0) and 150 mM potassium acetate with protease inhibitors (10) by gentle pipetting for 10 min. One-half volume of freshly prepared 10 mM 3,3′-dithiobis(sulfosuccinimidylpropionate) was added, and the reaction was incubated for 1 hour at 4°C with gentle mixing. The reaction was terminated with 1/10 volume of 1 M tris-HCl (pH 7.4) and incubation for 10 min at 4°C. The samples were adjusted to 1% SDS, heated to 90°C for 5 min, and diluted with nine volumes of IP buffer (29). The samples were centrifuged for 10 min at 15,000g, and 0.5 mg of soluble material was incubated for 4 hours at 23°C with 15 μl of protein A-Sepharose beads bearing covalently attached antibodies (28) to Sed5p. The samples were washed four times with IP buffer and eluted with 40 μl of 2% SDS at 90°C. The eluates were separated from the beads, 10 μl of 0.5 M dithiothreitol was added, and the samples were incubated for 20 min at 23°C. Samples (15 μl) were separated by SDS-PAGE (12% gel) and immunoblotted with antibodies (28) to Sed5p or Sly1p.
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note
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We thank S. Ferro-Novick, J. Rothman, R. Schekman, and H. D. Schmitt for materials, D. Hasara and I. D. Pokrovskaya for technical assistance, and C. Barlow, F. Hughson, and members of the Waters laboratory for discussions. Supported by NIH (GM48753) and the Lucille P. Markey Charitable Trust. M.G.W. is a Lucille P. Markey Biomedical Scholar.
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