Taxonomic characterization of Ochrobactrum sp. isolates from soil samples and wheat roots, and description of Ochrobactrum tritici sp. nov. and Ochrobactrum grignonense sp. nov.

International Journal of Systematic and Evolutionary Microbiology

Volumn 50, Issue 6, 2000, Pages 2207-2223

  Lebuhn, M ^a   Achouak, W ^a   Schloter, M ^a   Berge, O ^a   Meier, H ^a   Barakat, M ^a   Hartmann, A ^a   Heulin, T ^a  

^a IRFM   (France)

Author keywords

Geno and phenotyping; Immunotrapping from bulk soil and wheat rhizoplane; Ochrobactrum; Polyphasic taxonomy; Repetitive extragenic palindromic DNA

Indexed keywords

BACTERIAL DNA; RIBOSOME DNA;

ARTICLE; DNA SEQUENCE; GENOTYPE; NONHUMAN; NUCLEOTIDE SEQUENCE; OCHROBACTRUM; OCHROBACTRUM ANTHROPI; OCHROBACTRUM GRIGNONENSE; OCHROBACTRUM TRITICI; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; SPECIES DIFFERENTIATION; WHEAT;

BACTERIA (MICROORGANISMS); LONCHOCARPUS GLAUCIFOLIUS; NEGIBACTERIA; OCHROBACTRUM; OCHROBACTRUM ANTHROPI; OCHROBACTRUM GRIGNONENSE; OCHROBACTRUM INTERMEDIUM; OCHROBACTRUM SP.; OCHROBACTRUM TRITICI; PROKARYOTA; TRITICUM AESTIVUM;

EID: 0034526348     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/00207713-50-6-2207     Document Type: Article

References (41)

1. Burkholderia caribensis sp. nov., an exopolysaccharide-producing bacterium isolated from vertisol microaggregates in Martinique
2. Bacterial symbionts of Steinernema scapterisci
3. Optimization of double-stranded DNA sequencing for polymerase chain reaction products
4. Rapid mineralization of the Striazine ring of atrazine in soils in relation to soil management
5. Antibiotic susceptibility testing by a standardized single disk method
6. Enrichment of soil bacteria with magnetic and nonmagnetic immunological methods and identification using Inter-LINE PCR and genomic fingerprinting
7. Escherichia vulneris: A new species of Enterobacteriaceae associated with human wounds
8. A rapid method for the base ratio determination of bacterial DNA
9. Use of a single-strand specific nuclease for analysis of bacterial and plasmid deoxyribonucleic acid homo- and hetero-duplexes
10. The proteobacteria: Ribosomal RNA cistron similarities and bacterial taxonomy
11. Ribosomal ribonucleic acid cistron similarities and taxonomic neighborhood of Brucella and CDC group Vd
12. Classification and characterisation of heterotrophic microbial communities on the basis of patterns of community-level sole-carbon-source utilization
13. Reproducibility and correlation study of three deoxyribonucleic acid hybridisation procedures
14. Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective
15. Ochrobactrum anthropi gen. nov., sp. nov. from human clinical specimens and previously known as group Vd
16. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
17. Unconventional genomic organisation in the alpha subgroup of the Proteobacteria
18. Assessing genetic diversity of microbes using repetitive sequence-based PCR (rep-PCR)
19. Novel bacterial taxa inhabiting internal tissues of sweet corn and cotton
20. Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA
21. Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography
22. Evolution of Brucella
23. In search of a bacterial species definition
24. The genus Brucella
25. Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences
26. The neighbor-joining method: A new method for reconstructing phylogenetic trees
27. Gram-negative bacterial flora on the root surface of wheat (Triticum aestivum) grown under different soil conditions
28. The use of immunological methods to detect and identify bacteria in the environment
29. Diversität von Ochrobactrum anthropi-Populationen in landwirtschaftlichen Böden
30. Evidence from Aeromonas for genetic crossing-over in ribosomal sequences
31. Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
32. Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies
33. The genera Phyllobacterium and Ochrobactrum
34. Polyphasic taxonomy, a consensus approach to bacterial systematics
35. Evaluation of the relatedness of Brucella spp. and Ochrobactrum anthropi and description of Ochrobactrum intermedium sp. nov., a new species with a closer relationship to Brucella spp
36. Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction
37. 16S ribosomal amplification for phylogenic study
38. Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequencer