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Volumn 264, Issue 5, 1996, Pages 863-877

Structural change in Rev responsive element RNA of HIV-1 on binding Rev peptide

Author keywords

G G base pair; NMR; Rev RRE interaction; RNA structure; Two dimensional NMR

Indexed keywords

OLIGONUCLEOTIDE; REV PROTEIN; VIRUS RNA;

EID: 0030596005     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1996.0683     Document Type: Article
Times cited : (78)

References (53)
  • 1
    • 0026045893 scopus 로고
    • HIV-1 Rev regulation involves recognition of non-Watson-Crick base-pairs in viral RNA
    • Bartel, D. P., Zapp, M. L., Green, M. R. & Szostak, J. W. (1991). HIV-1 Rev regulation involves recognition of non-Watson-Crick base-pairs in viral RNA. Cell, 67, 529-536.
    • (1991) Cell , vol.67 , pp. 529-536
    • Bartel, D.P.1    Zapp, M.L.2    Green, M.R.3    Szostak, J.W.4
  • 2
    • 0026744912 scopus 로고
    • Preparation of isotopically labeled ribonucleotides for multidimensional NMR spectroscopy of RNA
    • Batey, R. T., Inada, M., Kujawinski, E., Puglisi, J. D. & Williamson, J. R. (1992). Preparation of isotopically labeled ribonucleotides for multidimensional NMR spectroscopy of RNA. Nud. Acids Res. 20, 4515-4523.
    • (1992) Nucl. Acids Res. , vol.20 , pp. 4515-4523
    • Batey, R.T.1    Inada, M.2    Kujawinski, E.3    Puglisi, J.D.4    Williamson, J.R.5
  • 3
    • 0028268016 scopus 로고
    • Binding of an HIV Rev peptide to Rev responsive element RNA induces formation of purine-purine base-pairs
    • Battiste, J. L., Tan, R., Frankel, A. D. & Williamson, J. R. (1994). Binding of an HIV Rev peptide to Rev responsive element RNA induces formation of purine-purine base-pairs. Biochemistry, 33, 2741-2747.
    • (1994) Biochemistry , vol.33 , pp. 2741-2747
    • Battiste, J.L.1    Tan, R.2    Frankel, A.D.3    Williamson, J.R.4
  • 5
    • 5144233105 scopus 로고
    • MLEV-17-based two-dimensional homonuclear magnetization transfer spectroscopy
    • Bax, A. & Davis, D. G. (1985). MLEV-17-based two-dimensional homonuclear magnetization transfer spectroscopy. J. Magn. Reson. 65, 355-360.
    • (1985) J. Magn. Reson. , vol.65 , pp. 355-360
    • Bax, A.1    Davis, D.G.2
  • 7
    • 0000195671 scopus 로고
    • Natural abundance nitrogen-15 NMR by enhanced heteronuclear spectroscopy
    • Bodenhausen, G. & Ruben, D. (1980). Natural abundance nitrogen-15 NMR by enhanced heteronuclear spectroscopy. Chem. Phys. Letters, 69, 185-189.
    • (1980) Chem. Phys. Letters , vol.69 , pp. 185-189
    • Bodenhausen, G.1    Ruben, D.2
  • 8
    • 0344448273 scopus 로고
    • Coherence transfer by isotropic mixing: Application to proton correlation spectroscopy
    • Braunschweiler, L. & Ernst, R. R. (1983). Coherence transfer by isotropic mixing: application to proton correlation spectroscopy. J. Magn. Reson. 53, 521-528.
    • (1983) J. Magn. Reson. , vol.53 , pp. 521-528
    • Braunschweiler, L.1    Ernst, R.R.2
  • 10
    • 0024853361 scopus 로고
    • Regulation by HIV Rev depends upon recognition of splice sites
    • Chang, D. D. & Sharp, P. A. (1989). Regulation by HIV Rev depends upon recognition of splice sites. Cell, 59, 789-795.
    • (1989) Cell , vol.59 , pp. 789-795
    • Chang, D.D.1    Sharp, P.A.2
  • 11
    • 0025071240 scopus 로고
    • Solution structure of an unusually stable RNA hairpin, 5′GGAC(UUCG)GUCC
    • Cheong, C., Varani, G., & Tinoco, I., Jr (1990). Solution structure of an unusually stable RNA hairpin, 5′GGAC(UUCG)GUCC. Nature, 346, 680-682.
    • (1990) Nature , vol.346 , pp. 680-682
    • Cheong, C.1    Varani, G.2    Tinoco I., Jr.3
  • 12
    • 0025017326 scopus 로고
    • Specific interaction of the human immunodeficiency virus Rev protein with a structured region in the env mRNA
    • Cochrane, A. E., Chen, C.-H. & Rosen, C. A. (1990). Specific interaction of the human immunodeficiency virus Rev protein with a structured region in the env mRNA. Proc. Natl Acad. Sci. USA, 87, 1198-1202.
    • (1990) Proc. Natl Acad. Sci. USA , vol.87 , pp. 1198-1202
    • Cochrane, A.E.1    Chen, C.-H.2    Rosen, C.A.3
  • 13
    • 0024836618 scopus 로고
    • Specific binding of HIV-1 recombinant Rev protein to the Rev-responsive element in vitro
    • Daly, T. J., Cook, K. S., Gray, G. S., Malone, T. E. & Rusche, J. R. (1989). Specific binding of HIV-1 recombinant Rev protein to the Rev-responsive element in vitro. Nature, 342, 816-819.
    • (1989) Nature , vol.342 , pp. 816-819
    • Daly, T.J.1    Cook, K.S.2    Gray, G.S.3    Malone, T.E.4    Rusche, J.R.5
  • 14
    • 0029071516 scopus 로고
    • Protein-RNA recognition
    • Draper, D. E. (1995). Protein-RNA recognition. Annu. Rev. Biochem. 64, 593-620.
    • (1995) Annu. Rev. Biochem. , vol.64 , pp. 593-620
    • Draper, D.E.1
  • 15
    • 0024382763 scopus 로고
    • The rev gene product of the human immunodeficiency virus affects envelope-specific RNA localization
    • Emerman, M., Vazeux, R. & Peden, K. (1989). The rev gene product of the human immunodeficiency virus affects envelope-specific RNA localization. Cell, 57, 1155-1165.
    • (1989) Cell , vol.57 , pp. 1155-1165
    • Emerman, M.1    Vazeux, R.2    Peden, K.3
  • 16
    • 0022553463 scopus 로고
    • HTLV-III expression and production involve complex regulation at the level of splicing and translation of viral RNA
    • Feinberg, M. B., Jarrett, R. F., Aldovini, A., Gallo, R. C. & Wong-Staal, F. (1986). HTLV-III expression and production involve complex regulation at the level of splicing and translation of viral RNA. Cell, 46, 807-817.
    • (1986) Cell , vol.46 , pp. 807-817
    • Feinberg, M.B.1    Jarrett, R.F.2    Aldovini, A.3    Gallo, R.C.4    Wong-Staal, F.5
  • 17
  • 19
    • 0025882673 scopus 로고
    • Human immunodeficiency virus type 1 regulator of virion expression, rev, forms nucleoprotein filaments after binding to a purine-rich "bubble" located within the rev-responsive region of viral mRNAs
    • Heaphy, S., Finch, J. T., Gait, M. J., Karn, J. & Singh, M. (1991). Human immunodeficiency virus type 1 regulator of virion expression, rev, forms nucleoprotein filaments after binding to a purine-rich "bubble" located within the rev-responsive region of viral mRNAs. Proc. Natl Acad. Sci. USA, 88, 7366-7370.
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 7366-7370
    • Heaphy, S.1    Finch, J.T.2    Gait, M.J.3    Karn, J.4    Singh, M.5
  • 20
    • 0027104999 scopus 로고
    • Recognition of the high affinity binding site in rev-response element RNA by the human immunodeficiency virus type-1 rev protein
    • Iwai, S., Pritchard, C., Mann, D. M., Karn, J. & Gait, M. J. (1992). Recognition of the high affinity binding site in rev-response element RNA by the human immunodeficiency virus type-1 rev protein. Nucl. Acids Res. 20, 6465-6472.
    • (1992) Nucl. Acids Res. , vol.20 , pp. 6465-6472
    • Iwai, S.1    Pritchard, C.2    Mann, D.M.3    Karn, J.4    Gait, M.J.5
  • 21
    • 0025374145 scopus 로고
    • Proton-proton correlation via carbon-carbon couplings: A three-dimensional NMR approach for the assignment of aliphatic resonances in proteins labeled with carbon-13
    • Kay, L. E., Ikura, M. & Bax, A. (1990). Proton-proton correlation via carbon-carbon couplings: a three-dimensional NMR approach for the assignment of aliphatic resonances in proteins labeled with carbon-13. J. Am. Chem. Soc. 112, 888-889.
    • (1990) J. Am. Chem. Soc. , vol.112 , pp. 888-889
    • Kay, L.E.1    Ikura, M.2    Bax, A.3
  • 22
    • 0028247290 scopus 로고
    • Interaction with the Rev response element along an extended stem I duplex structure is required to complete human immunodeficiency virus type 1 rev-mediated transactivation in vivo
    • Kimura, T. & Ohyama, A. (1994). Interaction with the Rev response element along an extended stem I duplex structure is required to complete human immunodeficiency virus type 1 rev-mediated transactivation in vivo. J. Biochem. 115, 945-952.
    • (1994) J. Biochem. , vol.115 , pp. 945-952
    • Kimura, T.1    Ohyama, A.2
  • 23
    • 0026540537 scopus 로고
    • Specific binding of a basic peptide from HIV-1 rev
    • Kjems, J. R., Calnan, B. J., Frankel, A. D. & Sharp, P. (1992). Specific binding of a basic peptide from HIV-1 rev. EMBO J. 11, 1119-1129.
    • (1992) EMBO J. , vol.11 , pp. 1119-1129
    • Kjems, J.R.1    Calnan, B.J.2    Frankel, A.D.3    Sharp, P.4
  • 24
    • 0019327003 scopus 로고
    • A two-dimensional nuclear Overhauser enhancement (2D NOE) experiment for the elucidation of complete proton-proton cross-relaxation networks in biological macromolecules
    • Kumar, A., Ernst, R. R. & Wuthrich, K. (1980). A two-dimensional nuclear Overhauser enhancement (2D NOE) experiment for the elucidation of complete proton-proton cross-relaxation networks in biological macromolecules. Biochem. Biophys. Res. Commun. 95, 1-6.
    • (1980) Biochem. Biophys. Res. Commun. , vol.95 , pp. 1-6
    • Kumar, A.1    Ernst, R.R.2    Wuthrich, K.3
  • 25
    • 0025366681 scopus 로고
    • A highly conserved RNA folding region coincident with the Rev response element of primate immunodeficiency viruses
    • Le, S.-Y., Malim, M. H., Cullen, B. R. & Maizel, J. V. (1990). A highly conserved RNA folding region coincident with the Rev response element of primate immunodeficiency viruses. Nucl. Acids Res. 18, 1613-1623.
    • (1990) Nucl. Acids Res. , vol.18 , pp. 1613-1623
    • Le, S.-Y.1    Malim, M.H.2    Cullen, B.R.3    Maizel, J.V.4
  • 26
    • 0024518918 scopus 로고
    • The HIV-1 rev trans-activator acts through a structured target sequence to activate nuclear export of unspliced viral mRNA
    • Malim, M. H., Hauber, J., Le, S.-Y., Maizel, J. V. & Cullen, B. R. (1989). The HIV-1 rev trans-activator acts through a structured target sequence to activate nuclear export of unspliced viral mRNA. Nature, 388, 254-257.
    • (1989) Nature , vol.388 , pp. 254-257
    • Malim, M.H.1    Hauber, J.2    Le, S.-Y.3    Maizel, J.V.4    Cullen, B.R.5
  • 27
    • 0028108364 scopus 로고
    • A molecular rheostat. Co-operative rev binding to stem I of the rev-response element modulates human immunodeficiency virus type-1 late gene expression
    • Mann, D. A., Mikaélian, I., Zemmel, R. W., Green, S. M., Lowe, A. D., Kimura, T., Singh, M., Butler, G., Gait, M. & Karn, J. (1994). A molecular rheostat. Co-operative rev binding to stem I of the rev-response element modulates human immunodeficiency virus type-1 late gene expression. J. Mol. Biol. 241, 193-207.
    • (1994) J. Mol. Biol. , vol.241 , pp. 193-207
    • Mann, D.A.1    Mikaélian, I.2    Zemmel, R.W.3    Green, S.M.4    Lowe, A.D.5    Kimura, T.6    Singh, M.7    Butler, G.8    Gait, M.9    Karn, J.10
  • 28
    • 0000244937 scopus 로고
    • P.COSY, a sensitive alternative for double-quantum-filtered COSY
    • Marion, D. & Bax, A. (1988). P.COSY, a sensitive alternative for double-quantum-filtered COSY. J. Magn. Reson. 80, 528-533.
    • (1988) J. Magn. Reson. , vol.80 , pp. 528-533
    • Marion, D.1    Bax, A.2
  • 30
    • 0023651444 scopus 로고
    • Oligoribonucleotide synthesis using T7-RNA polymerase and synthetic DNA templates
    • Milligan, J. F., Groebe, D. R., Witherell, G. W. & Uhlenbeck, O. C. (1987). Oligoribonucleotide synthesis using T7-RNA polymerase and synthetic DNA templates. Nucl. Acids Res. 15, 8783-8798.
    • (1987) Nucl. Acids Res. , vol.15 , pp. 8783-8798
    • Milligan, J.F.1    Groebe, D.R.2    Witherell, G.W.3    Uhlenbeck, O.C.4
  • 31
    • 0026611261 scopus 로고
    • Preparation of C-13 and N-15 labelled RNAs for heteronuclear multidimensional NMR studies
    • Nikonowicz, E. P., Sirr, A., Legault, P., Jucker, F. M., Baer, L. M. & Pardi, A. (1992). Preparation of C-13 and N-15 labelled RNAs for heteronuclear multidimensional NMR studies. Nucl. Acids Res. 20, 4507-4513.
    • (1992) Nucl. Acids Res. , vol.20 , pp. 4507-4513
    • Nikonowicz, E.P.1    Sirr, A.2    Legault, P.3    Jucker, F.M.4    Baer, L.M.5    Pardi, A.6
  • 32
    • 44949286953 scopus 로고
    • Comparison of techniques for H-1-detected heteronuclear H-1-N-15 spectroscopy
    • Norwood, T. J., Boyd, J., Heritage, J. E., Soffe, N. & Campbell, I. D. (1990). Comparison of techniques for H-1-detected heteronuclear H-1-N-15 spectroscopy. J. Magn. Reson. 87, 488-501.
    • (1990) J. Magn. Reson. , vol.87 , pp. 488-501
    • Norwood, T.J.1    Boyd, J.2    Heritage, J.E.3    Soffe, N.4    Campbell, I.D.5
  • 33
    • 0028175778 scopus 로고
    • 1H NMR studies of the high-affinity Rev binding site of the Rev responsive element of HIV-1 mRNA: Base-pairing in the core binding element
    • Peterson, R. D., Bartel, D. P., Szostak, J. W., Horvath, S. J. & Feigon, J. (1994). 1H NMR studies of the high-affinity Rev binding site of the Rev responsive element of HIV-1 mRNA: base-pairing in the core binding element. Biochemistry, 33, 5357-5366.
    • (1994) Biochemistry , vol.33 , pp. 5357-5366
    • Peterson, R.D.1    Bartel, D.P.2    Szostak, J.W.3    Horvath, S.J.4    Feigon, J.5
  • 34
    • 0005963761 scopus 로고
    • Multiple quantum filters for elucidating NMR coupling networks
    • Piantini, U., Sørensen, O. W. & Ernst, R. R. (1982). Multiple quantum filters for elucidating NMR coupling networks. J. Am. Chem. Soc. 104, 6800-6801.
    • (1982) J. Am. Chem. Soc. , vol.104 , pp. 6800-6801
    • Piantini, U.1    Sørensen, O.W.2    Ernst, R.R.3
  • 35
    • 0028337047 scopus 로고
    • Methylphosphonate mapping of phosphate contacts critical for RNA recognition by the human immunodeficiency virus tat and rev proteins
    • Pritchard, C. E., Grasby, J. A., Hamy, F., Zacharek, A. M., Singh, M., Karn, J. & Gait, M. J. (1994). Methylphosphonate mapping of phosphate contacts critical for RNA recognition by the human immunodeficiency virus tat and rev proteins. Nucl. Acids Res. 22, 2592-2600.
    • (1994) Nucl. Acids Res. , vol.22 , pp. 2592-2600
    • Pritchard, C.E.1    Grasby, J.A.2    Hamy, F.3    Zacharek, A.M.4    Singh, M.5    Karn, J.6    Gait, M.J.7
  • 38
    • 44049118414 scopus 로고
    • A constant-time 2d overbodenhausen experiment for inverse correlation of isotopically enriched species
    • Santoro, J. & King, G. (1992). A constant-time 2d overbodenhausen experiment for inverse correlation of isotopically enriched species. J. Magn. Reson. 97, 202-207.
    • (1992) J. Magn. Reson. , vol.97 , pp. 202-207
    • Santoro, J.1    King, G.2
  • 39
    • 0000906068 scopus 로고
    • A new water suppression technique for generating pure-phase spectra with equal excitation over a wide bandwidth
    • Sklenář, V. & Bax, A. (1987). A new water suppression technique for generating pure-phase spectra with equal excitation over a wide bandwidth. J. Magn. Reson. 75, 378-383.
    • (1987) J. Magn. Reson. , vol.75 , pp. 378-383
    • Sklenář, V.1    Bax, A.2
  • 43
    • 0022444917 scopus 로고
    • A second post-transcriptional trans-activator gene required for HTLV-III replication
    • Sodroski, J., Goh, W. C., Rosen, C., Dayton, A., Terwilliger, E. & Haseltine, W. (1986). A second post-transcriptional trans-activator gene required for HTLV-III replication. Nature, 321, 412-417.
    • (1986) Nature , vol.321 , pp. 412-417
    • Sodroski, J.1    Goh, W.C.2    Rosen, C.3    Dayton, A.4    Terwilliger, E.5    Haseltine, W.6
  • 44
  • 45
    • 0027251792 scopus 로고
    • RNA recognition by an isolated alpha helix
    • Tan, R., Chen, L., Buettner, J. A., Hudson, D. & Frankel, A. D. (1993). RNA recognition by an isolated alpha helix. Cell, 73, 1031-1040.
    • (1993) Cell , vol.73 , pp. 1031-1040
    • Tan, R.1    Chen, L.2    Buettner, J.A.3    Hudson, D.4    Frankel, A.D.5
  • 46
    • 0026601935 scopus 로고
    • Identification of a high-affinity RNA-binding site for the human immunodeficiency virus type 1 Rev protein
    • Tiley, L. S., Malim, M. H., Tewary, H. K., Stockley, P. G. & Cullen, B. R. (1992). Identification of a high-affinity RNA-binding site for the human immunodeficiency virus type 1 Rev protein. Proc. Natl Acad. Sci. USA, 89, 758-762.
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 758-762
    • Tiley, L.S.1    Malim, M.H.2    Tewary, H.K.3    Stockley, P.G.4    Cullen, B.R.5
  • 47
    • 44049116280 scopus 로고
    • Optimization of constant-time evolution in multidimensional NMR experiment
    • van de Yen, F. J. M. & Philippens, M. E. P. (1992). Optimization of constant-time evolution in multidimensional NMR experiment. J. Magn. Reson. 97, 637-644.
    • (1992) J. Magn. Reson. , vol.97 , pp. 637-644
    • Van De Yen, F.J.M.1    Philippens, M.E.P.2
  • 48
    • 0026348081 scopus 로고
    • RNA structure and NMR spectroscopy
    • Varani, G. & Tinoco, I. (1991). RNA Structure and NMR spectroscopy. Quart. Rev. Biophys. 24, 479-532.
    • (1991) Quart. Rev. Biophys. , vol.24 , pp. 479-532
    • Varani, G.1    Tinoco, I.2
  • 49
    • 0001748180 scopus 로고
    • Resolution enhancement and spectral editing of uniformly C-13-enriched proteins by homonuclear broadband C-13 decoupling
    • Vuister, G. W. & Bax, A. (1992). Resolution enhancement and spectral editing of uniformly C-13-enriched proteins by homonuclear broadband C-13 decoupling. J. Magn. Reson. 98, 428-435.
    • (1992) J. Magn. Reson. , vol.98 , pp. 428-435
    • Vuister, G.W.1    Bax, A.2
  • 50
    • 0027439912 scopus 로고
    • The conformation of loop E of eukaryotic 5 S ribosomal RNA
    • Wimberly, B., Varani, G. & Tinoco, I., Jr (1993). The conformation of loop E of eukaryotic 5 S ribosomal RNA. Biochemistry, 32, 1078-1087.
    • (1993) Biochemistry , vol.32 , pp. 1078-1087
    • Wimberly, B.1    Varani, G.2    Tinoco I., Jr.3
  • 51
    • 0025748046 scopus 로고
    • Synthesis and purification of large amounts of RNA oligonucleotides
    • Wyatt, J. R., Chastain, M. & Puglisi, J. D. (1991). Synthesis and purification of large amounts of RNA oligonucleotides. Bio Techniques, 11, 764-769.
    • (1991) BioTechniques , vol.11 , pp. 764-769
    • Wyatt, J.R.1    Chastain, M.2    Puglisi, J.D.3
  • 52
    • 0024310483 scopus 로고
    • Sequence-specific RNA binding by the HIV-1 Rev protein
    • Zapp, M. L. & Green, M. R. (1989). Sequence-specific RNA binding by the HIV-1 Rev protein. Nature, 342, 714-716.
    • (1989) Nature , vol.342 , pp. 714-716
    • Zapp, M.L.1    Green, M.R.2
  • 53
    • 0025760054 scopus 로고
    • Rapid and simple purification of T7 RNA polymerase
    • Zawadzki, V. & Gross, H. J. (1991). Rapid and simple purification of T7 RNA polymerase. Nucl. Acids Res. 19, 1948.
    • (1991) Nucl. Acids Res. , vol.19 , pp. 1948
    • Zawadzki, V.1    Gross, H.J.2


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