메뉴 건너뛰기




Volumn 7, Issue 5, 2000, Pages 291-303

ATLN elements, LINEs from Arabidopsis thaliana: Identification and characterization

Author keywords

Arabidopsis thaliana; Non LTR retrotransposon (LINE); Target site duplication; Translational control

Indexed keywords

ANIMALIA; ARABIDOPSIS THALIANA;

EID: 0034739491     PISSN: 13402838     EISSN: None     Source Type: Journal    
DOI: 10.1093/dnares/7.5.291     Document Type: Article
Times cited : (18)

References (41)
  • 1
    • 0004224917 scopus 로고
    • American Society for Microbiology, Washington, DC
    • Berg, D. E. and Howe, M. M. 1989, Mobile DNA, American Society for Microbiology, Washington, DC.
    • (1989) Mobile DNA
    • Berg, D.E.1    Howe, M.M.2
  • 2
    • 0003151571 scopus 로고
    • Retrotransposon reverse transcription
    • Skalka, A. M., Goff, S. P. (eds) Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
    • Gabriel, A. and Boeke, J. D. 1993, Retrotransposon reverse transcription, In: Skalka, A. M., Goff, S. P. (eds) Reverse Transcriptase, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, pp. 275-328.
    • (1993) Reverse Transcriptase , pp. 275-328
    • Gabriel, A.1    Boeke, J.D.2
  • 3
    • 0002110973 scopus 로고
    • Lines and related retroposons: Long interspersed repeated sequences in the eucaryotic genome
    • Berg., D. E., Howe, M. M. (eds) American Society for Microbiology, Washington, DC
    • Hutchison, C A., Hardies, S. C., Loeb, D. D., Shehee, W. R., and Edgell, M. H. 1989, LINEs and related retroposons: long interspersed repeated sequences in the eucaryotic genome, In: Berg., D. E., Howe, M. M. (eds) Mobile DNA, American Society for Microbiology, Washington, DC, pp. 593-617.
    • (1989) Mobile DNA , pp. 593-617
    • Hutchison, C.A.1    Hardies, S.C.2    Loeb, D.D.3    Shehee, W.R.4    Edgell, M.H.5
  • 4
    • 0030903621 scopus 로고    scopus 로고
    • Many human L1 elements are capable of retrotransposition
    • Sassaman, D. M., Dombroski, B. A., Moran, J. V. et al. 1997, Many human L1 elements are capable of retrotransposition, Nature Genet., 16, 37-43.
    • (1997) Nature Genet. , vol.16 , pp. 37-43
    • Sassaman, D.M.1    Dombroski, B.A.2    Moran, J.V.3
  • 5
    • 0023351699 scopus 로고
    • The site-specific ribosomal insertion element type II of Bombyx mori (R2Bm) contains the coding sequence for a reverse transcriptase-like enzyme
    • Burke, W. D., Calalang, C. C., and Eickbush, T. H. 1987, The site-specific ribosomal insertion element type II of Bombyx mori (R2Bm) contains the coding sequence for a reverse transcriptase-like enzyme, Mol. Cell. Biol., 7, 2221-2230.
    • (1987) Mol. Cell. Biol. , vol.7 , pp. 2221-2230
    • Burke, W.D.1    Calalang, C.C.2    Eickbush, T.H.3
  • 6
    • 0023055867 scopus 로고
    • Amino acid sequence homology in gag region of reverse transcribing elements and the coat protein gene of cauliflower mosaic virus
    • Covey, S. N. 1986, Amino acid sequence homology in gag region of reverse transcribing elements and the coat protein gene of cauliflower mosaic virus. Nucl. Acids Res., 14, 623-633.
    • (1986) Nucl. Acids Res. , vol.14 , pp. 623-633
    • Covey, S.N.1
  • 7
    • 0002565136 scopus 로고
    • Involvement of nucleocapsids in reverse transcription: A general phenomenon?
    • Fuetterer, J. and Hohn, T. 1987, Involvement of nucleocapsids in reverse transcription: a general phenomenon? Trends Biochem. Sci., 12, 92-95.
    • (1987) Trends Biochem. Sci. , vol.12 , pp. 92-95
    • Fuetterer, J.1    Hohn, T.2
  • 8
    • 0030042251 scopus 로고    scopus 로고
    • Cytoplasmic ribonucleoprotein complexes containing human LINE-1 protein and RNA
    • Hohjoh, H. and Singer, M. F. 1996, Cytoplasmic ribonucleoprotein complexes containing human LINE-1 protein and RNA, EMBO J., 15, 630-639.
    • (1996) EMBO J. , vol.15 , pp. 630-639
    • Hohjoh, H.1    Singer, M.F.2
  • 9
    • 0030870342 scopus 로고    scopus 로고
    • Sequence-specific single-strand RNA binding protein encoded by the human LINE-1 retrotransposon
    • Hohjoh, H. and Singer, M. F. 1997, Sequence-specific single-strand RNA binding protein encoded by the human LINE-1 retrotransposon, EMBO J., 16, 6034-6043.
    • (1997) EMBO J. , vol.16 , pp. 6034-6043
    • Hohjoh, H.1    Singer, M.F.2
  • 10
    • 0031559596 scopus 로고    scopus 로고
    • Ribonuclease and high salt sensitivity of the ribonucleoprotein complex formed by the human LINE-1 retrotransposon
    • Hohjoh, H. and Singer, M. F. 1997, Ribonuclease and high salt sensitivity of the ribonucleoprotein complex formed by the human LINE-1 retrotransposon, J. Mol. Biol., 271, 7-12.
    • (1997) J. Mol. Biol. , vol.271 , pp. 7-12
    • Hohjoh, H.1    Singer, M.F.2
  • 11
    • 0009969062 scopus 로고    scopus 로고
    • Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition
    • Feng, Q., Moran, J. V., Kazazian, H. H., Jr., and Boeke, J. D. 1996, Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition, Cell, 87, 905-916.
    • (1996) Cell , vol.87 , pp. 905-916
    • Feng, Q.1    Moran, J.V.2    Kazazian H.H., Jr.3    Boeke, J.D.4
  • 12
    • 0026428975 scopus 로고
    • Reverse transcriptase encoded by a human transposable element
    • Mathias, S. L., Scott, A. F., Kazazian, H. H., Jr., Boeke, J. D., and Gabriel, A. 1991, Reverse transcriptase encoded by a human transposable element, Science, 254, 1808-1810.
    • (1991) Science , vol.254 , pp. 1808-1810
    • Mathias, S.L.1    Scott, A.F.2    Kazazian H.H., Jr.3    Boeke, J.D.4    Gabriel, A.5
  • 13
    • 0000554795 scopus 로고
    • Cin4, an insert altering the structure of the A1 gene in Zea mays, exhibits properties of nonviral retrotransposons
    • Schwarz-Sommer, Z., Leclercq, L., Göbel, E., and Saedler, H. 1987, Cin4, an insert altering the structure of the A1 gene in Zea mays, exhibits properties of nonviral retrotransposons, EMBO J., 6, 3873-3880.
    • (1987) EMBO J. , vol.6 , pp. 3873-3880
    • Schwarz-Sommer, Z.1    Leclercq, L.2    Göbel, E.3    Saedler, H.4
  • 14
    • 0026724644 scopus 로고
    • Identification of an internal cis-element essential for the human l1 transcription and a nuclear factor(s) binding to the element
    • Minakami, R., Kurose, K., Etoh, K., Furuhata, Y., Hattori, M., and Sakaki, Y. 1992, Identification of an internal cis-element essential for the human L1 transcription and a nuclear factor(s) binding to the element, Nucl. Acids Res., 20, 3039-3145.
    • (1992) Nucl. Acids Res. , vol.20 , pp. 3039-3145
    • Minakami, R.1    Kurose, K.2    Etoh, K.3    Furuhata, Y.4    Hattori, M.5    Sakaki, Y.6
  • 15
    • 0027525870 scopus 로고
    • The 5′ untranslated region of the I factor, a long interspersed nuclear element-like retrotransposon of drosophila melanogaster, contains an internal promoter and sequences that regulate expression
    • McLean, C., Bucheton, A., and Finnegan, D. J. 1993, The 5′ untranslated region of the I factor, a long interspersed nuclear element-like retrotransposon of Drosophila melanogaster, contains an internal promoter and sequences that regulate expression, Mol. Cell. Biol., 13, 1042-1050.
    • (1993) Mol. Cell. Biol. , vol.13 , pp. 1042-1050
    • McLean, C.1    Bucheton, A.2    Finnegan, D.J.3
  • 16
    • 0030985032 scopus 로고    scopus 로고
    • Asymmetric methylation in the hypermethylated CpG promoter region of the human L1 retrotransposon
    • Woodcock, D. M., Lawler, C. B., Linsenmeyer, M. E., Doherty, J. P., and Warren, W. 1997, Asymmetric methylation in the hypermethylated CpG promoter region of the human L1 retrotransposon, J. Biol. Chem., 272, 7810-7816.
    • (1997) J. Biol. Chem. , vol.272 , pp. 7810-7816
    • Woodcock, D.M.1    Lawler, C.B.2    Linsenmeyer, M.E.3    Doherty, J.P.4    Warren, W.5
  • 17
    • 0030940594 scopus 로고    scopus 로고
    • Identification of critical CpG sites for repression of L1 transcription by DNA methylation
    • Hata, K. and Sakaki, Y. 1997, Identification of critical CpG sites for repression of L1 transcription by DNA methylation, Gene, 189, 227-234.
    • (1997) Gene , vol.189 , pp. 227-234
    • Hata, K.1    Sakaki, Y.2
  • 18
    • 0027450385 scopus 로고
    • Reverse transcription of R2bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition
    • Luan, D. D., Korman, M. H., Jakubczak, J. L., and Eickbush, T. H. 1993, Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: A mechanism for non-LTR retrotransposition, Cell, 72, 595-605.
    • (1993) Cell , vol.72 , pp. 595-605
    • Luan, D.D.1    Korman, M.H.2    Jakubczak, J.L.3    Eickbush, T.H.4
  • 19
    • 17344370076 scopus 로고    scopus 로고
    • The impact of l1 retrotransposons on the human genome
    • Kazazian, H. H., Jr. and Moran, J. V. 1998, The impact of L1 retrotransposons on the human genome, Nature Genet., 19, 19-24.
    • (1998) Nature Genet. , vol.19 , pp. 19-24
    • Kazazian H.H., Jr.1    Moran, J.V.2
  • 20
    • 0027500625 scopus 로고
    • An abundant LINE-like element amplified in the genome of lilium speciosum
    • Leeton, P. R. J. and Smyth, D. R. 1993, An abundant LINE-like element amplified in the genome of Lilium speciosum, Mol. Gen. Genet., 237, 97-104.
    • (1993) Mol. Gen. Genet. , vol.237 , pp. 97-104
    • Leeton, P.R.J.1    Smyth, D.R.2
  • 21
    • 0030065451 scopus 로고    scopus 로고
    • Multiple non-LTR retrotransposons in the genome of Arabidopsis thaliana
    • Wright, D. A., Ke, N., Smalle, J., Hauge, B. M., Goodman, H. M., and Voytas, D. F. 1996, Multiple non-LTR retrotransposons in the genome of Arabidopsis thaliana, Genetics, 142, 569-578.
    • (1996) Genetics , vol.142 , pp. 569-578
    • Wright, D.A.1    Ke, N.2    Smalle, J.3    Hauge, B.M.4    Goodman, H.M.5    Voytas, D.F.6
  • 22
    • 0029982136 scopus 로고    scopus 로고
    • Sequence analysis of an 81 kb contig from Arabidopsis thaliana chromosome III
    • Quigley, F., Dao, P., Cottet, A., and Mache, R. 1996, Sequence analysis of an 81 kb contig from Arabidopsis thaliana chromosome III, Nucl. Acids Res., 24, 4313-4318.
    • (1996) Nucl. Acids Res. , vol.24 , pp. 4313-4318
    • Quigley, F.1    Dao, P.2    Cottet, A.3    Mache, R.4
  • 23
    • 0032055154 scopus 로고    scopus 로고
    • The genomic organization of non-LTR retrotransposons (LINEs) from three beta species and five other angiosperms
    • Kubis, S. E., Heslop-Harrison, J. S., Desel, C., and Schmidt, T. 1998, The genomic organization of non-LTR retrotransposons (LINEs) from three Beta species and five other angiosperms, Plant Mol. Biol., 36, 821-831.
    • (1998) Plant Mol. Biol. , vol.36 , pp. 821-831
    • Kubis, S.E.1    Heslop-Harrison, J.S.2    Desel, C.3    Schmidt, T.4
  • 24
    • 0032982180 scopus 로고    scopus 로고
    • Non-LTR retrotransposons (LINEs) as ubiquitous components of the plant genomes
    • Noma, K., Ohtsubo, E., and Ohtsubo, H. 1999, Non-LTR retrotransposons (LINEs) as ubiquitous components of the plant genomes, Mol. Gen. Genet., 261, 71-79.
    • (1999) Mol. Gen. Genet. , vol.261 , pp. 71-79
    • Noma, K.1    Ohtsubo, E.2    Ohtsubo, H.3
  • 25
    • 0023989064 scopus 로고
    • Improved tools for biological sequence comparison
    • Pearson, W. R. and Lipman, D. J. 1988, Improved tools for biological sequence comparison, Proc. Natl. Acad. Sci. USA, 85, 2444-2448.
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 2444-2448
    • Pearson, W.R.1    Lipman, D.J.2
  • 27
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith, T. F. and Waterman, M. 1981, Identification of common molecular subsequences, J. Mol. Biol., 147, 195-197.
    • (1981) J. Mol. Biol. , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.2
  • 28
    • 0027968068 scopus 로고
    • CLUSTAL w: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G., and Gibson, T. J. 1994, CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucl. Acids Res., 22, 4673-4680.
    • (1994) Nucl. Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 30
    • 0030771475 scopus 로고    scopus 로고
    • RIRE1, a retrotransposon from wild rice Oryza australiensis
    • Noma, K., Nakajima, R., Ohtsubo, H., and Ohtsubo, E. 1997, RIRE1, a retrotransposon from wild rice Oryza australiensis, Genes Genet. Syst., 72, 131-140.
    • (1997) Genes Genet. Syst. , vol.72 , pp. 131-140
    • Noma, K.1    Nakajima, R.2    Ohtsubo, H.3    Ohtsubo, E.4
  • 31
    • 0025949412 scopus 로고
    • Nuclear targeting sequences - A consensus?
    • Dingwall, C. and Laskey, R. A. 1991, Nuclear targeting sequences - a consensus? Trends Biochem. Sci., 16, 478-481.
    • (1991) Trends Biochem. Sci. , vol.16 , pp. 478-481
    • Dingwall, C.1    Laskey, R.A.2
  • 32
    • 0029984570 scopus 로고    scopus 로고
    • Nucleocytoplasmic transport
    • Görlich, D. and Mattaj, I. W. 1996, Nucleocytoplasmic transport, Science, 271, 1513-1518.
    • (1996) Science , vol.271 , pp. 1513-1518
    • Görlich, D.1    Mattaj, I.W.2
  • 33
    • 0025006614 scopus 로고
    • Origin and evolution of retroelements based upon their reverse transcriptase sequences
    • Xiong, Y. and Eickbush, T. H. 1990, Origin and evolution of retroelements based upon their reverse transcriptase sequences, EMBO J., 9, 3353-3362.
    • (1990) EMBO J. , vol.9 , pp. 3353-3362
    • Xiong, Y.1    Eickbush, T.H.2
  • 34
    • 0001322945 scopus 로고    scopus 로고
    • Translational initiation
    • Neidhardt, F. C. (eds) American Society for Microbiology, Washington, DC
    • Draper, D. E. 1996, Translational initiation. In: Neidhardt, F. C. (eds) Escherichia coli and Salmonella, American Society for Microbiology, Washington, DC, pp. 902-908
    • (1996) Escherichia Coli and Salmonella , pp. 902-908
    • Draper, D.E.1
  • 35
    • 0041388107 scopus 로고
    • Translational coupling of the maize chloroplast atpB and atpE genes
    • Gatenby, A. A., Rothstein, S. J., and Nomura, M. 1989, Translational coupling of the maize chloroplast atpB and atpE genes. Proc. Natl. Acad. Sci. USA, 86, 4066-4070.
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 4066-4070
    • Gatenby, A.A.1    Rothstein, S.J.2    Nomura, M.3
  • 36
    • 0029896020 scopus 로고    scopus 로고
    • Recoding: Dynamic reprogramming of translation
    • Gesteland, R. F. and Atkins, J. F. 1996, Recoding: dynamic reprogramming of translation, Annu. Rev. Biochem., 65, 741-768.
    • (1996) Annu. Rev. Biochem. , vol.65 , pp. 741-768
    • Gesteland, R.F.1    Atkins, J.F.2
  • 38
    • 0022904750 scopus 로고
    • Transposable elements controlling I-R hybrid dysgenesis in D. melanogaster are similar to mammalian LINEs
    • Fawcett, D. H., Lister, C. K., Kellett, E., and Finnegan, D. J. 1986, Transposable elements controlling I-R hybrid dysgenesis in D. melanogaster are similar to mammalian LINEs, Cell, 47, 1007-1015.
    • (1986) Cell , vol.47 , pp. 1007-1015
    • Fawcett, D.H.1    Lister, C.K.2    Kellett, E.3    Finnegan, D.J.4
  • 39
    • 0025346187 scopus 로고
    • Selective cloning and sequence analysis of the human L1 (LINE-1) sequences which transposed in the relatively recent past
    • Hohjoh, H., Minakami, R., and Sakaki, Y. 1990, Selective cloning and sequence analysis of the human L1 (LINE-1) sequences which transposed in the relatively recent past, Nucl. Acids Res., 18, 4099-4104.
    • (1990) Nucl. Acids Res. , vol.18 , pp. 4099-4104
    • Hohjoh, H.1    Minakami, R.2    Sakaki, Y.3
  • 40
    • 0022552305 scopus 로고
    • Major transcript of the frameshifted coxII gene from Trypanosome mitochondria contains four nucleotides that are not encoded in the DNA
    • Benne, R., Burg, J. V. D., Brakenhoff, J. P. J., Sloof, P., Boom, J. H. V., and Tromp, M. C. 1986, Major transcript of the frameshifted coxII gene from Trypanosome mitochondria contains four nucleotides that are not encoded in the DNA, Cell, 46, 819-826.
    • (1986) Cell , vol.46 , pp. 819-826
    • Benne, R.1    Burg, J.V.D.2    Brakenhoff, J.P.J.3    Sloof, P.4    Boom, J.H.V.5    Tromp, M.C.6
  • 41
    • 0029060749 scopus 로고
    • A place in the world for RNA editing
    • Scott, J. 1995, A place in the world for RNA editing, Cell, 81, 833-836.
    • (1995) Cell , vol.81 , pp. 833-836
    • Scott, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.