DNA photolyases and cryptochromes

Mutation Research - DNA Repair

Volumn 460, Issue 3-4, 2000, Pages 143-149

  Deisenhofer, Johann ^a  

^a HOWARD HUGHES MEDICAL INSTITUTE   (United States)

Author keywords

Cryptochrome; Photolyase; Three dimensional structure

Indexed keywords

DEOXYRIBODIPYRIMIDINE PHOTOLYASE;

DNA REPAIR; ENZYME ANALYSIS; ENZYME STRUCTURE; ENZYME SUBSTRATE; HUMAN; MULTIGENE FAMILY; NONHUMAN; PRIORITY JOURNAL; REVIEW; STRUCTURE ANALYSIS;

EID: 0034734382     PISSN: 09218777     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0921-8777(00)00023-9     Document Type: Article

References (35)

1. Friedberg E.C., Walker G.C., Siede W. DNA Repair and Mutagenesis. 1995;ASM Press, Washington, DC.
2. Kelner A. Effect of visible light on the recovery of Streptomyces griseus conidia from ultra-violet irradiation injury. Proc. Natl. Acad. Sci. U.S.A. 35:1949;73-79.
3. Dulbecco R. Reactivation of ultraviolet inactivated bacteriophage by visible light. Nature. 163:1949;949-950.
4. Wulff D.L., Rupert C.S. Disappearance of thymine photodimer in ultraviolet irradiated DNA upon treatment with a photoreactivating enzyme from baker's yeast. Biochem. Biophys. Res. Commun. 7:1962;237-240.
5. Sancar A., Rupert C.S. Cloning of the phr gene and amplification of photolyase in Escherichia coli. Gene. 4:1978;295-308.
6. Sancar A., Smith F.W., Sancar G.B. Purification of Escherichia coli DNA photolyase. J. Biol. Chem. 259:1984;6028-6032.
7. Sancar A., Sancar G.B. Escherichia coli DNA photolyase is a flavoprotein. J. Mol. Biol. 172:1984;223-227.
8. Kim S.-T., Sancar A. Photochemistry, photophysics and mechanism of pyrimidine dimer repair by DNA photolyase. Photochem. Photobiol. 57:1993;895-904.
9. Sancar A. Structure and function of DNA photolyase. Biochemistry. 33:1994;2-9.
10. -, the catalytically active form of the cofactor. Proc. Natl. Acad. Sci. U.S.A. 90:1993;8023-8027.
11. Aubert C., Mathis P., Eker A.P.M., Brettel K. Intraprotein electron transfer between tyrosine and tryptophan in DNA photolyase from Anacystis nidulans. Proc. Natl. Acad. Sci. U.S.A. 96:1999;5423-5427.
12. Aubert C., Brettel K., Mathis P., Eker A.P.M., Boussac A. EPR detection of the transient tyrosyl radical in DNA photolyase from Anacystis nidulans. J. Am. Chem. Soc. 121:1999;8659-8660.
13. Ahmad M., Cashmore A.R. HY4 gene of A. thaliana encodes a protein with characteristics of a blue-light photoreceptor. Nature. 366:1993;162-166.
14. Malhotra K., Kim S.-T., Batschauer A., Dawut L., Sancar A. Putative blue-light photoreceptors from Arabidopsis thaliana and Sinapis alba with a high degree of sequence homology to DNA photolyase contain the two photolyase cofactors but lack DNA repair activity. Biochemistry. 34:1995;6892-6899.
15. Ahmad M., Cashmore A.R. Seeing blue: the discovery of cryptochrome. Plant Mol. Biol. 30:1996;851-861.
16. Todo T., Takemori H., Ryo H., Ihara M., Matsunaga T., Nikaido O., Sato K., Nomura T. A new photoreactivating enzyme that specifically repairs ultraviolet light-induced (6-4) photoproducts. Nature. 361:1993;371-374.
17. Todo T., Ryo H., Yamamoto K., Toh H., Inui T., Ayaki H., Nomura T., Ikenaga M. Similarity among the Drosophila (6-4) photolyase, a human photolyase homolog, and the DNA photolyase-blue-light photoreceptor family. Science. 272:1996;109-112.
18. Hsu D.S., Zhao X.D., Zhao S.Y., Kazantsev A., Wang R.P., Todo T., Wei Y.F., Sancar A. Putative human blue-light photoreceptors hCRY1 and hCRY2 are flavoproteins. Biochemistry. 35:1996;13871-13877.
19. Cashmore A.R., Jarillo J.A., Wu Y.J., Liu D.M. Cryptochromes: blue light receptors for plants and animals. Science. 284:1999;760-765.
20. Todo T. Functional diversity of the DNA photolyase blue light receptor family. Mutat. Res. DNA Repair. 434:1999;89-97.
21. Kiener A., Husain I., Sancar A., Walsh C.T. Purification and properties of Methanobacterium thermoautotrophicum DNA photolyase. J. Biol. Chem. 264:1989;13880-13887.
22. Kleiner O., Butenandt L., Carell T., Batschauer A. Class II DNA photolyase from Arabidopsis thaliana contains FAD as a cofactor. Eur. J. Biochem. 264:1999;161-167.
23. Emery P., So W.V., Kaneko M., Hall J.C., Rosbash M. CRY, a Drosophila clock and light-regulated cryptochrome, is a major contributor to circadian rhythm resetting and photosensitivity. Cell. 95:1998;669-679.
24. Park H.-W., Sancar A., Deisenhofer J. Crystallization and preliminary crystallographic analysis of Escherichia coli DNA photolyase. J. Mol. Biol. 231:1993;1122-1125.
25. Park H.-W., Kim S.-T., Sancar A., Deisenhofer J. Crystal structure of DNA photolyase from Escherichia coli. Science. 268:1995;1866-1872.
26. Miki K., Tamada T., Nishida H., Inaka K., Yasui A., De Ruiter P.E., Eker A.P.M. Crystallization and preliminary X-ray diffraction studies of photolyase (photoreactivating enzyme) from the cyanobacterium Anacystis nidulans. J. Mol. Biol. 233:1993;167-169.
27. Tamada T., Kitadokoro K., Higuchi Y., Inaka K., Yasui A., De Ruiter P.E., Eker A.P.M., Miki K. Crystal Structure of DNA photolyase from Anacystis nidulans. Nat. Struct. Biol. 4:1997;887-891.
28. Jones T.A., Bergdoll M., Kjeldgaard M. O: a macromolecule modeling environment. Bugg C.E., Ealick S.E. Crystallographic and Modeling Methods in Molecular Design. 1990;189-199 Springer-Verlag, New York.
29. 306 to FADH. Biophys. J. 76:1999;1241-1249.
30. Langenbacher T., Zhao X.D., Bieser G., Heelis P.F., Sancar A., Michel-Beyerle M.E. Substrate and temperature dependence of DNA photolyase repair activity examined with ultrafast spectroscopy. J. Am. Chem. Soc. 119:1997;10532-10536.
31. Vande Berg B.J., Sancar G.B. Evidence for dinucleotide flipping by DNA photolyase. J. Biol. Chem. 273:1998;20276-20284.
32. Hahn J., Michel-Beyerle M.E., Rösch N. Binding of pyrimidine model dimers to the photolyase enzyme: a molecular dynamics study. J. Phys. Chem. B. 103:1999;2001-2007.
33. Sanders D.B., Wiest O. A model for the enzyme-substrate complex of DNA photolyase and photodamaged DNA. J. Am. Chem. Soc. 121:1999;5127-5134.
34. Van Noort J., Orsini F., Eker A., Wyman C., De Grooth B., Greve J. DNA bending by photolyase in specific and non-specific complexes studied by atomic force microscopy. Nucleic Acids Res. 27:1999;3875-3880.
35. Kraulis P.J. Molscript: a program to produce both detailed and schematic plots structures. J. Appl. Crystallogr. 24:1991;946-950.