DNA bending by photolyase in specific and non-specific complexes studied by atomic force microscopy

Nucleic Acids Research

Volumn 27, Issue 19, 1999, Pages 3875-3880

  Van Noort, John ^a   Orsini, Francesco ^a   Eker, Andre ^b   Wyman, Claire ^b   De Grooth, Bart ^a   Greve, Jan ^a  

^a UNIVERSITY OF TWENTE   (Netherlands)

^b ERASMUS MEDICAL CENTER   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

CURVED DNA; DEOXYRIBODIPYRIMIDINE PHOTOLYASE; DNA FRAGMENT;

ARTICLE; ATOMIC FORCE MICROSCOPY; DNA CONFORMATION; DNA DAMAGE; DNA PROTEIN COMPLEX; ENZYME SUBSTRATE; PRIORITY JOURNAL; RESTRICTION FRAGMENT; ULTRAVIOLET IRRADIATION;

DEOXYRIBODIPYRIMIDINE PHOTO-LYASE; DNA; DNA HELICASES; DNA-BINDING PROTEINS; HUMANS; MICROSCOPY, ATOMIC FORCE; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION;

EID: 0033215330     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/27.19.3875     Document Type: Article

References (27)

1. Schepartz, A. (1995) Science, 269, 989-990.
2. Bustamante, C. and Rivetti, C. (1996) Annu. Rev. Biophys. Biomol. Struct., 25, 395-429.
3. Sancar, A. (1994) Biochemistry, 33, 2-9.
4. Park, H.-W., Kim, S.-T., Sancar, A. and Deisenhofer, J. (1995) Science, 268, 1866-1872.
5. Weeda, G., Van Ham, R.C.A., Vermuelen, W., Bootsma, D., Van der Eb, A.J. and Hoeijmakers, J.H.J. (1990) Cell. 62, 777-791.
6. Eker, A.P.M., Kooiman, P., Hessels, J.K.C. and Yasui, A. (1990) J. Biol. Chem., 265, 809-815.
7. Van der Werf, K.O., Putman, C.A., de Grooth, B.G., Segerink, F.B., Schipper, E.H., van Hulst, N.F. and Greve, J. (1993) Rev. Sci. Instrum., 64, 2892-2897.
8. Rivetti, C., Guthold, M. and Bustamante, C. (1996) J. Mol. Biol., 264, 919-932.
9. Schulz, A., Mücke, N., Langowski, J. and Rippe, K. (1998) J. Mol. Biol., 283, 821-836.
10. Van Noort, S.J.T., van der Werf, K.O., de Grooth, B.G., van Hulst, N.F. and Greve, J. (1997) Ultramicroscopy, 69, 117-127.
11. Husain, I., Sancar, G.B., Holbrook, S.R. and Sancar, A. (1987) J. Biol. Chem., 262, 13188-13197.
12. Van de Berg, B.J. and Sancar, G.B. (1998) J. Biol. Chem., 273, 20276-20284.
13. Tamada, T., Kitadokoro, K., Higuchi, Y., Inaka, K., Yasui, A., de Ruiter, P.E., Eker, A.P.M. and Miki, K. (1997) Nature Stuct. Biol., 4, 887-891.
14. Sancar, G.B., Smith, F.W., Reid, R., Payne, G. Levy, M. and Sancar, A. (1987) J. Biol. Chem., 262, 478-485.
15. Eker, A.P.M., Hessels, J.K.C. and Dekker, R.H. (1986) Photochem. Photobiol., 44, 197-205.
16. Koradi, R., Billeter, M. and Wüthrich, K. (1996) J. Mol. Graph., 14, 51-55.
17. Sayle, R.A. and Milner-White, E.J. (1995) Trends Biochem. Sci., 20, 374.
18. Bear, M.E. and Sancar, G.B. (1993) J. Biol. Chem., 268, 16717-16724.
19. Li, Y.F. and Sancar, A. (1991) Biochemistry, 29, 5689-5705.
20. Dlakic, M. and Harrington, R.E. (1998) Bioinformatics, 14, 326-331.
21. Vakser, I.A. (1996) Biopolymers, 39, 455-464.
22. Erie, D.A., Yang, G., Schultz, H.C. and Bustamante, C. (1994) Science, 266, 1562-1566.
23. Van Noort, S.J.T., van der Werf, K.O., Eker, A.P.M., Wyman, C., de Grooth, B.G., van Hulst, N.F. and Greve, J. (1998) Biophys. J., 74, 2840-2849.
24. McAteer, K., Jing, Y., Kao, J., Taylor, J.-S. and Kennedy, M.A. (1998) J. Mol. Biol., 282, 1013-1032.
25. Lau, A.Y., Schärer, O.D., Samson, L., Verdine, G.L. and Ellenberger, T. (1998) Cell, 95, 249-258.
26. Vassylyev, D.G., Kashiwagi, T., Mikami, Y., Ariyoshi, M., Iwai, S., Ohtsuka, E. and Morikawa, K. (1995) Cell, 83, 773-782.
27. Rivetti, C., Walker, C. and Bustamante, C. (1998) J. Mol. Biol., 280, 41-59.