The anatomy of protein β-sheet topology

Journal of Molecular Biology

Volumn 299, Issue 4, 2000, Pages 1075-1089

  Zhang, Chao ^a   Kim, Sung Hou ^a  

^a LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

Author keywords

Common sheet motifs; Kinetics of protein folding; Protein fold anatomy and taxonomy; Structural genomics; Topological preference

Indexed keywords

POLYPEPTIDE;

ARTICLE; CHEMICAL REACTION KINETICS; DATA BASE; EVOLUTION; HYDROGEN BOND; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FOLDING; PROTEIN STRUCTURE; THERMODYNAMICS;

EID: 0034674168     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.2000.3678     Document Type: Article

References (42)

1. Matching theory and experiment in protein folding
2. Hydrogen bonding in globular proteins
3. The Protein Data Bank: A computer-based archival file for macromolecular structures
4. Funnels, pathways and the energy landscape of protein folding
5. Coiling of β-pleated sheets
6. The classification and origins of protein folding patterns
7. Structure of proteins: Tacking of α-helices and pleated sheets
8. Protein folds in the all-β and all-α classes
9. From Levinthal to pathways to funnels
10. The fundamentals of protein folding: Bringing together theory and experiment
11. Common structural motifs in small proteins and domains
12. Structural similarity between two-layer α/β and β-proteins
13. Structural genomics: Bioinformatics in the driver's seat
14. New Monte Carlo algorithms for protein folding
15. The Greek key motif: Extraction, classification and analysis
16. Dictionary of protein secondary structure: Pattern recognition of hydrogen bonded and geometrical features
17. Shining a light on structural genomics
18. Analysis of protein sheet topologies by graph theoretical methods
19. MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
20. Structural principles of α/β barrel proteins: The packing of the interior of the sheet
21. Structural patterns in globular proteins
22. SCOP: A structural classification of proteins database for the investigation of sequences and structures
23. Logical analysis of the machanism of protein folding IV: Super-secondary structures
24. Classification of protein folds
25. CORA-topological fingerprints for protein structural families
26. CATHA hierarchic classification of protein domain structures
27. Alpha plus beta folds revisited: Some favoured, motifs
28. Similarities of protein topologies: Evolutionary divergence, functional convergence or principles of folding?
29. Handedness of crossover connections in β-sheet
30. β-Sheet topology and the relatedness of proteins
31. The anatomy and taxonomy of protein structure
32. Marrying structure and genomics
33. Structural properties of protein β-sheets
34. 100,000 Protein structures for the biologist
35. On the conformation of proteins: The handedness of the β-strand-α-helix-β-strand unit
36. Hydrogen bonding in globular proteins
37. Class-directed structure determination: Foundation for a protein structure initiative
38. Protein structural topology: Automated analysis and diagrammatic representation
39. Nucleation, rapid folding, and globular intrachain regions in proteins
40. Extending molecular systematics to the third dimension
41. Structure-based assignment of the biochemical function of a hypothetical protein: A test case of structural genomics
42. Estimating the number of protein folds