Insertion of bacteriophage φFSW into the chromosome of Lactobacillus casei strain Shirota (S-1): Characterization of the attachment sites and the integrase gene

Gene

Volumn 249, Issue 1-2, 2000, Pages 127-134

  Shimizu Kadota, Mariko ^a   Kiwaki, Mayumi ^a   Sawaki, Saeko ^a   Shirasawa, Yukio ^a   Shibahara Sone, Harue ^a   Sako, Tomoyuki ^a  

^a YAKULT CENTRAL INSTITUTE FOR MICROBIOLOGICAL RESEARCH   (Japan)

Author keywords

Integration vector; Lactic acid bacteria; Lambda integrase family; Tyrosine recombinase

Indexed keywords

INTEGRASE; RECOMBINASE; TYROSINE; BACTERIOPHAGE RECEPTOR; RECOMBINANT DNA;

ARTICLE; BACTERIOPHAGE; CHROMOSOME INSERTION; DNA INTEGRATION; DNA SEQUENCE; GENE; LACTOBACILLUS CASEI; NONHUMAN; NUCLEOTIDE SEQUENCE; PLASMID; PRIORITY JOURNAL; PROPHAGE; SEQUENCE ANALYSIS; AMINO ACID SEQUENCE; BACTERIAL CHROMOSOME; GENETICS; LYSOGENIZATION; MOLECULAR GENETICS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; VIROLOGY; VIRUS DNA CELL DNA INTERACTION; VIRUS GENOME;

LACTOBACILLUS CASEI;

AMINO ACID SEQUENCE; ATTACHMENT SITES, MICROBIOLOGICAL; BACTERIOPHAGES; BASE SEQUENCE; CHROMOSOMES, BACTERIAL; DNA, RECOMBINANT; GENOME, VIRAL; INTEGRASES; LACTOBACILLUS CASEI; LYSOGENY; MOLECULAR SEQUENCE DATA; PLASMIDS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; VIRUS INTEGRATION;

EID: 0034673858     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(00)00154-2     Document Type: Article

References (24)

1. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215:1990;403-410.
2. Alvarez M.A., Herrero M., Suárez J.E. The site-specific recombination system of the Lactobacillus species bacteriophage A2 integrates in Gram-positive and Gram-negative bacteria. Virology. 250:1998;185-193.
3. Auvray F., Coddeville M., Ritzenthaler P., Dupont L. Plasmid integration in a wide range of bacteria mediated by the integrase of Lactobacillus delbrueckii bacteriophage mv4. J. Bacteriol. 179:1997;1837-1845.
4. Campbell A.M. Episomes. 1969;Harper and Row, New York.
5. Campbell A.M. Chromosomal insertion sites for phages and plasmids. J. Bacteriol. 174:1992;7495-7499.
6. Carroll D., Kehoe M.A., Cavanagh D., Coleman D.C. Novel organization of the site-specific integration and excision recombination functions of the Staphylococcus aureus serotype F virulence-converting phage φ13 and φ42. Mol. Microbiol. 16:1995;877-893.
7. Dupont L., Boizet-Bonhoure B., Coddeville M., Auvray F., Ritzenthaler P. Characterization of genetic elements required for site-specific integration of Lactobacillus delbrueckii subsp. bulgaricus bacteriophage mv4 and construction of an integration proficient vector for Lactobacillus plantarum. J. Bacteriol. 177:1995;586-595.
8. Horinouchi S., Weisblum B. Nucleotide sequence and functional map of pC194, a plasmid that specifies inducible chloramphenicol resistance. J. Bacteriol. 150:1982;815-825.
9. Isegawa Y., Sheng J., Sokawa Y., Yamanishi K., Nakagomi O., Ueda S. Selective amplification of cDNA sequence from total RNA by cassette-ligation mediated polymerase chain reaction (PCR): Application to sequencing 6.5 kb genome segment of hantavirus strain B-1. Mol. Cell. Probes. 6:1992;467-475.
10. Kwon H.J., Tirumalai R., Landy A., Ellenberger T. Flexibility in DNA recombination: Structure of the Lambda integrase catalytic core. Science. 276:1997;126-131.
11. Landy A. Dynamic, structural and regulatory aspects of λ site-specific recombination. Annu. Rev. Biochem. 58:1989;913-949.
12. McShan W.M., Tang Y.F., Ferretti J.J. Bacteriophage T12 of Streptococcus pyogenes integrate into the gene encoding a serine tRNA. Mol. Microbiol. 23:1997;719-728.
13. Nunes-Düby S.E., Kwon H.J., Tirumalai R.S., Ellenberger T., Landy A. Similarities and differences among 105 members of the Int family of site-specific recombinases. Nucleic Acids Res. 26:1998;391-406.
14. Parreira R., São-José C., Isidro A., Domingues S., Vieira G., Santos M.A. Gene organization in a central DNA fragment of Oenococcus oeni bacteriophage fOg44 encoding lytic, integrative and non-essential functions. Gene. 226:1999;83-93.
15. Pearson W.R., Lipman D.J. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA. 85:1988;2444-2448.
16. Pouwels P., Leer R.J. Genetics of lactobacilli: plasmids and gene expression. Antonie van Leeuwenhoek. 64:1993;85-107.
17. Raya R.R., Fremaux C., DeAntoni G.L., Klaenhammer T.R. Site-specific integration of the temperate bacteriophage φadh into the Lactobacillus gasseri chromosome and molecular characterization of the phage (attP) and bacterial (attB) attachment sites. J. Bacteriol. 174:1992;5584-5592.
18. Shimizu-Kadota M., Sakurai T. Prophage curing in Lactobacillus casei by isolation of a thermoinducible mutant. Appl. Environ. Microbiol. 43:1982;1284-1287.
19. Shimizu-Kadota M., Sakurai T., Tsuchida N. Prophage origin of a virulent phage appearing on fermentations of Lactobacillus casei S-1. Appl. Environ. Microbiol. 45:1983;669-674.
20. Shimizu-Kadota M., Tsuchida N. Physical mapping of the virion and the prophage DNAs of a temperate Lactobacillus phage φFSW. J. Gen. Microbiol. 130:1984;423-430.
21. Shimizu-Kadota M. Properties of lactose plasmid pLY101 in Lactobacillus casei. Appl. Environ. Microbiol. 53:1987;2987-2991.
22. Shimizu-Kadota M., Shibahara-Sone H., Ishiwa H. Shuttle plasmid vectors for Lactobacillus casei and Escherichia coli with a minus origin. Appl. Environ. Microbiol. 57:1991;3292-3300.
23. Tao W., Wang L., Shen R., Sheng Z. Complete nucleotide sequences of two phosphoglucoisomerase isozymes from Bacillus stearothermophilus. Nucleic Acids Res. 17:1989;10107.
24. Yokokura T., Watanuki M., Gohgi T., Tanaka R., Ohwaki M., Tohyama K., Ozaki H., Yasutake N. Lactobacillus casei Strain Shirota; Intestinal Flora and Human Health. 1999;Yakult Honsha, Tokyo.