Gene organization in a central DNA fragment of Oenococcus oeni bacteriophage fOg44 encoding lytic, integrative and non-essential functions

Gene

Volumn 226, Issue 1, 1999, Pages 83-93

  Parreira, Ricardo ^a   São José, Carlos ^a,b   Isidro, Anabela ^a   Domingues, Susana ^a,b   Vieira, Graça ^a,b   Santos, Mário A ^a,c  

^a UNIVERSITY OF LISBON   (Portugal)

^b UNIVERSITY OF LISBON   (Portugal)

^c INSTITUTO DE TECNOLOGIA QUÍMICA E BIOLÓGICA   (Portugal)

Author keywords

Deletion; Holin; Integrase; Lysin; Oenophages; Superinfection immunity

Indexed keywords

VIRUS DNA;

ARTICLE; BACTERIOPHAGE; GENE STRUCTURE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; PROMOTER REGION; VIRUS DNA CELL DNA INTERACTION; VIRUS GENOME;

AMINO ACID SEQUENCE; BACTERIOPHAGES; BASE SEQUENCE; DEOXYRIBONUCLEASE ECORI; GENE DELETION; GENES, VIRAL; GRAM-POSITIVE COCCI; INTEGRASES; LACTOBACILLACEAE; LEUCONOSTOC; LYSOGENY; MEMBRANE PROTEINS; MOLECULAR SEQUENCE DATA; RECOMBINANT PROTEINS; SEQUENCE ANALYSIS, DNA; VIRAL PROTEINS;

EID: 0344958845     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(98)00554-X     Document Type: Article

References (35)

1. Alonso J.C., Lüder G., Stiege A.C., Chai S., Weise F., Trautner T.A. The complete nucleotide sequence and functional organization of Bacillus subtilis bacteriophage SPP1. Gene. 204:1997;201-212.
2. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215:1990;403-410.
3. Arendt E.K., Daly C., Fitzgerald G.F., van de Guchte M. Molecular characterization of lactococcal bacteriophage Tuc2009 and identification and analysis of genes encoding lysin, a putative holin, and two structural proteins. Appl. Environ. Microbiol. 60:1994;1875-1883.
4. Arendt E.K., Neve H., Hammes W.P. Characterization of phage isolates from a phage-carrying culture of Leuconostoc oenos 58N. Appl. Microbiol. Biotechnol. 34:1991;220-224.
5. Barksdale L., Arden S.B. Persisting bacteriophage infections, lysogeny and phage conversions. Annu. Rev. Microbiol. 28:1974;265-284.
6. Boizet B., Lahib-Mansais Y., Dupont L., Ritzenthaler P., Mata M. Cloning, expression and sequence analysis of an endolysin-encoding gene of Lactobacillus bulgaricus bacteriophage mv1. Gene. 94:1990;60-67.
7. Bruttin A., Desiere F., Lucchini S., Foley S., Brüssow H. Characterization of the lysogeny DNA module from the temperate Streptococcus thermophilus bacteriophage φSfi21. Virology. 233:1997;136-148.
8. Carroll D., Kehoe M.A., Cavanagh D., Coleman D.C. Novel organization of the site-specific integration and excision recombination functions of the Staphylococcus aureus serotype F virulence-converting phages φ13 and φ42. Mol. Microbiol. 16:1995;877-893.
9. Dupont L., Boizet-Bonhoure B., Codeville M., Auvray F., Ritzenthaler P. Characterization of genetic elements required for site-specific integration of Lactobacillus delbrueckii subsp. bulgaricus bacteriophage mv4 and construction of an integration-proficient vector for Lactobacillus plantarum. J. Bacteriol. 177:1995;586-595.
10. Esposito D., Scocca J.J. The integrase family of tyrosine recombinases: evolution of a conserved active site domain. Nucleic Acids Res. 25:1997;3605-3614.
11. Ford M.E., Sarkis G.F., Belanger A.E., Hendrix R.W., Hatfull G.F. Genome structure of mycobacteriophage D29: implications for phage evolution. J. Mol. Biol. 279:1998;143-164.
12. García P., García J.L., García E., Sánchez-Puelles J.M., López R. Modular organization of the lytic enzymes of Streptococcus pneumoniae and its bacteriophages. Gene. 86:1990;81-88.
13. Gindreau E., Turlois S., Lonvaud-Funel A. Identification and sequence analysis of the region encoding the site-specific integration system from Leuconostoc oenos (Oenococcus oeni) temperate bacteriophage φ10MC. FEMS Microbiol. Lett. 147:1997;279-285.
14. Henick-Kling T., Lee T.H., Nicholas D.J.D. Inhibition of bacterial growth and malolactic fermentation in wine by bacteriophage. J. Appl. Bacteriol. 61:1986;287-293.
15. Laemmly U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature (London). 227:1970;680-685.
16. Landy A. Dynamic, structural, and regulatory aspects of λ site-specific recombination. Annu. Rev. Biochem. 58:1989;913-949.
17. Lawrence R.C., Thomas T.D., Terzaghi B.E. Reviews of the progress of dairy science: cheese starters. J. Dairy Res. 43:1976;141-193.
18. Lillehaug D., Birkeland N.-K. Characterization of genetic elements required for site-specific integration of the temperate lactococcal bacteriophage φLC3 and construction of φLC3 integration-negative mutants. J. Bacteriol. 175:1993;1745-1755.
19. Lillehaug D., Nes I.F., Birkeland N.-K. A highly efficient and stable system for site-specific integration of genes and plasmids into the phage φLC3 attachment site (attB) of the Lactococcus lactis chromosome. Gene. 188:1997;129-136.
20. Loewen R.R., Miller R.C. Jr., Warren R.A.J. Mixed bacteriophage infection of Escherichia coli: exclusion of superinfecting T4 by T7. Can. J. Microbiol. 25:1979;867-873.
21. Lu M., Henning U. The immunity (imm) gene of Escherichia coli: bacteriophage T4. J. Virol. 63:1989;3472-3478.
22. Oki M., Kakikawa M., Nakamura S., Yamamura E.-T., Watanabe K., Sasamoto M., Taketo A., Kodaira K.-I. Functional and structural features of the holin HOL protein of the Lactobacillus plantarum φg1e: analysis in Escherichia coli system. Gene. 197:1997;137-145.
23. Pearson W.R., Lipman D.J. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA. 85:1988;2444-2448.
24. Sambrook, F., Fritsch, E.F., Maniatis, T., 1989. Molecular Cloning: A Laboratory Manual, 2nd ed. Cold Spring Harbour Laboratory, Cold Spring Harbour, NY.
25. Sanger F., Coulson A.R., Hong G.F., Hill D.F., Petersen G.B. Nucleotide sequence of bacteriophage λ DNA. J. Mol. Biol. 162:1982;729-773.
26. Santos R., São-José C., Vieira G., Paveia H., Santos M.A. Genome diversity in temperate bacteriophages of Oenococcus oeni. Arch. Virol. 143:1998;523-536.
27. Santos R., Vieira G., Santos M.A., Paveia H. Characterization of temperate bacteriophages of Leuconostoc oenos and evidence for two prophage attachment sites in the genome of starter strain PSU-1. J. Appl. Bacteriol. 81:1996;383-392.
28. Shearman C.A., Jury K., Gasson M.J. Controlled expression and structural organization of a Lactococcus lactis bacteriophage lysin encoded by two overlapping genes. Appl. Environ. Microbiol. 60:1994;3063-3073.
29. Siegers K., Entian K.D. Genes involved in immunity to the lantibiotic nisin produced by Lactococcus lactis 6F3. Appl. Environ. Microbiol. 61:1995;1082-1089.
30. Sozzi T., Maret R., Poulin J.M. Mise en évidence de bactériophages dans le vin. Experientia. 32:1976;568-569.
31. Studier F.W. Use of bacteriophage T7 lysozyme to improve an inducible T7 expression system. J. Mol. Biol. 219:1991;37-44.
32. Tinoco I., Borer P.N., Dengler B., Levine M.D., Uhlenbeck O.C., Crothers D.M., Gralla J. Improved estimation of secondary structure in ribonucleic acids. Nature (London) New Biology. 246:1973;40-41.
33. Williams, J.G., Mason, P.J., 1990. Nucleic Acids Hybridization: A Practical Approach. IRL Press, Oxford.
34. Young R. Bacteriophage lysis: mechanisms and regulation. Mol. Microbiol. 56:1992;430-481.
35. Zavaleta A.I., Martinez-Murcia A.J., Rodriguez-Valera F. 16S-23S rDNA intergenic sequences indicate that Leuconostoc oenos is phylogenetically homogeneous. Microbiology. 142:1996;2105-2114.