The site-specific recombination system of the Lactobacillus species bacteriophage A2 integrates in gram-positive and gram-negative bacteria

Virology

Volumn 250, Issue 1, 1998, Pages 185-193

  Alvarez, Miguel A ^a   Herrero, Mónica ^a   Suárez, Juan E ^a  

^a UNIVERSITY OF OVIEDO   (Spain)

Author keywords

Integrative vectors; Lactic acid bacteria; Site specific integration

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENETICS; BACTERIOPHAGE; DNA RECOMBINATION; GENE STRUCTURE; GENETIC RECOMBINATION; LACTOBACILLUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; VIRUS DNA CELL DNA INTERACTION;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; LACTOBACILLUS; LACTOCOCCUS LACTIS; NEGIBACTERIA; POSIBACTERIA; UNIDENTIFIED BACTERIOPHAGE;

EID: 0032505633     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.1998.9353     Document Type: Article

References (58)

1. Abremskii K. E., Hoess R. H. Evidence for a second conserved arginine residue in the integrase family of recombination proteins. Prot. Eng. 5:1992;87-91.
2. Accolas J. P., Peigney C., Linsowtin G. K. Y., Cluzel P. J., Sechaud L. Lutte contre les bactériophages dans l'industrie laitière. Bactéries Lactiques. 1994;Lorica, Uriage. p. 473-492.
3. Argos P., Landy A., Abremski K., Egan J. B., Haggard-Ljungquist E., Hoess R. H., Kahn M. L., Kalionis B., Narayana S. V. L., Pierson L. S., Sternberg N., Leong J. M. The integrase family of site-specific recombinases: regional similarities and global diversity. EMBO J. 5:1986;433-440.
4. Auvray F., Coddeville M., Ritzenthaler P., Dupont L. Plasmid integration in a wide range of bacteria mediated by the integrase ofLactobacillus delbrueckii. J. Bacteriol. 179:1997;1837-1845.
5. Blattner F. R., Plunkett G. III, Bloch C. A., Perna N. T., Burland V., Riley M., Collado-Vides J., Glasner J. D., Rode C. K., Mayhew G. F., Gregor J., Davis N. W., Kirkpatrick H. A., Goeden M. A., Rose D. J., Mau B., Shao Y. The complete genome sequence ofEscherichia coli. Science. 277:1997;1453-1474.
6. Boccard F., Smokvina T., Pernodet J., Friedmann A., Guérineau M. The integrated conjugative plasmid pSAM2 ofStreptomyces ambofaciens. EMBO J. 8:1989;973-980.
7. Bruttin A., Foley S., Brüssow H. The site-specific integration system of the temperateStreptococcus thermophilus. Virology. 237:1997;148-158.
8. Bullock W. O., Fernández J. M., Short J. M. XL1-Blue: a high efficiency plasmid transformingrecA Escherichia coli. BioTechniques. 5:1987;376-378.
9. Campbell A. Episomes. Adv. Genet. 11:1962;101-145.
10. Campbell A. M. Chromosomal insertion sites for phages and plasmids. J. Bacteriol. 174:1992;7495-7499.
11. Carroll D., Kehoe M. A., Cavanagh D., Coleman D. C. Novel organization of the site-specific integration and excision recombination functions of theStaphylococcus aureus. Mol. Microbiol. 16:1995;877-893.
12. Chopin M. C., Chopin A. Interactions phages-bactéries lactiques. de Roissart H., Luquet F. M. Bactéries Lactiques. 1994;445-456 Lorica, Uriage.
13. Chopin A., Chopin M. C., Maillo-Batt A., Langella P. Two plasmid-determined restriction and modification systems inStreptococcus lactis. Plasmid. 11:1984;260-263.
14. Christiansen B., Johnsen M. G., Stenby E., Vogensen F. K., Hammer K. Characterization of the lactococcal temperate phage TP901-1 and its site-specific integration. J. Bacteriol. 176:1994;1069-1076.
15. David E., van der Rest M. E., Driessen A. J. M., Simons G., de Vos W. M. Nucleotide sequence and expression inEscherichia coliLactococcus lactis. J. Bacteriol. 172:1990;5789-5794.
16. Deutscher M. P. Ribonucleases, tRNA nucleotidyltransferase, and the 3′ processing of tRNA. Prog. Nucleic Acids Res. Mol. Biol. 39:1990;209-240.
17. Devereux J., Haeberli P., Smithies O. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12:1984;387-395.
18. Díaz E., López R., García J. L. EJ-1, a temperate bacteriophage ofStreptococcus pneumoniaeMyoviridae. J. Bacteriol. 174:1992;5516-5525.
19. Dodd I. B., Kalionis B., Egan J. B. Control of gene expression in the P2-related temperate coliphage 186: VIII control of lysis and lysogeny by transcriptional switch. J. Mol. Biol. 214:1990;27-37.
20. Dupont L., Boizet-Bonhoure B., Coddeville M., Auvray F., Ritzenthaler P. Characterization of genetic elements required for site-specific integration ofLactobacillus delbrueckiibulgaricusL. plantarum. J. Bacteriol. 177:1995;586-595.
21. Esposito D., Scocca J. J. Identification of an HP1 phage protein required for site-specific excision. Mol. Microbiol. 13:1994;685-695.
22. Fremaux C., De Antoni G., Raya R., Klaenhammer T. R. Genetic organization and sequence of the region encoding integrative functions fromLactobacillus gasseri. Gene. 126:1993;61-66.
23. Garcia P., Alonso J. C., Suárez J. E. Molecular analysis of thecosLactobacillus caseicos. Mol. Microbiol. 23:1997;505-514.
24. Green C. J., Vold B. S. Staphylococcus aureus. J. Bacteriol. 175:1993;5091-5096.
25. Hagerman P. J. Sequence directed curvature of DNA. Annu. Rev. Biochem. 59:1990;755-781.
26. Hayashi T., Matsumoto H., Makoto O., Terawaki Y. Molecular analysis of a cytotoxin-converting phage, φCTX, ofPseudomonas aeruginosathe attP-cos-ctx. Mol. Microbiol. 7:1993;657-667.
27. Herrero M., de los Reyes-Gavilán C. G., Caso J. L., Suárez J. E. Characterization of φ393-A2, a bacteriophage that infectsLactobacillus casei. Microbiology. 140:1994;2585-2590.
28. Hill C. P., Garvey P., Fitzgerald G. F. Bacteriophage-host interactions and resistance mechanisms, analysis of the conjugative bacteriophage resistance plasmid pNP40. Lait. 76:1996;67-79.
29. Hopwood D. A., Bibb M. J., Chater K. F., Kieser T., Bruton C. J., Kieser H. M., Lydiate D. J., Smith C. P., Ward J. M., Schrempf H. S. Genetic Manipulation ofStreptomyces: 1985;The John Innes FoundationJohn Innes Institute, Norwich.
30. Janssen G. R., Bibb M. J. Derivatives of pUC18 that haveBglEscherichia coli. Gene. 124:1993;133-134.
31. Klaenhammer T. R., Fitzgerald F. G. Bacteriophages and bacteriophage resistance. Gasson M. J., M de Vos W. Genetics and Biotechnology of Lactic Acid Bacteria. 1994;106-168 Blackie, Glasgow.
32. Kok J. Genetics of the proteolytic system of lactic acid bacteria. FEMS Microbiol. Rev. 87:1990;15-41.
33. Komine Y., Adachi T., Inokuchi H., Ozeki H. Genomic organization and physical mapping of the transfer RNA genes inEscherichia coli. J. Mol. Biol. 212:1990;579-598.
34. Ladero V., García P., Bascarán V., Herrero M., Alvarez M. A., Suárez J. E. Identification of the repressor-encoding gene of theLactobacillus. J. Bacteriol. 180:1998;3474-3476.
35. Landy A. Dynamic, structural and regulatory aspects of lambda site-specific recombination. Annu. Rev. Biochem. 58:1989;913-949.
36. Lee C. Y., Buranen S. L. Extent of DNA sequence required in integration of staphylococcal bacteriophage L54a. J. Bacteriol. 171:1989;1653-1657.
37. Lee, M. H. Pascopella, L. Jacobs, W. R. Hatfull, G. H. 1991, Site-specific integration of mycobacteriophage L5: integration-proficient vectors forMycobacterium smegmatis, Mycobacterium tuberculosis, Proc. Natl. Acad. Sci, USA, 88, 3111, 3115.
38. Leenhouts K. J., Kok J., Venema G. Campbell-like integration of heterologous plasmids into the chromosome ofLactococcus lactis. lactis. Appl. Environ. Microbiol. 55:1989;394-400.
39. Leenhouts K. J., Kok J., Venema G. Stability of integrated plasmids in the chromosome ofLactococcus lactis. Appl. Environ. Microbiol. 56:1990;2726-2735.
40. Lillehaug D., Birkeland N. K. Characterization of genetic elements required for site-specific integration of the temperate lactococcal bacteriophage φLC3 and construction of integration-negative φLC3 mutants. J. Bacteriol. 175:1993;1745-1755.
41. Maguin E., Duwat P., Hege T., Erlich D., Gruss A. New thermosensitive plasmid from Gram-positive bacteria. J. Bacteriol. 174:1992;5633-5638.
42. Mayo B., Gonzalez B., Arca P., Suárez J. E. Cloning and expression of the plasmid encoded β-DLactobacillus plantarum. FEMS Microbiol Lett. 122:1994;145-152.
43. Messing J., Crea R., Seeburg P. H. A system for shotgun DNA sequencing. Nucleic Acids Res. 9:1981;3309-3321.
44. Novel G. Génétique moléculaire et génie génétique des bactéries lactiques. de Roissart H., Luquet F. M. Bactéries Lactiques. 1994;403-428 Lorica, Uriage.
45. Pargellis C. A., Nunes-Duby S. E., Moitoso de Vargas L., Landy A. Suicide recombination substrates yield covalent lambda Int-DNA complexes and lead to the identification of the active site tyrosine. J. Biol. Chem. 263:1988;7678-7685.
46. Piersons L. S., Kahn M. L. Integration of satellite bacteriophage P4 inEscherichia coli. J. Mol. Biol. 196:1987;487-496.
47. Rauch P. J. G., de Vos W. M. Identification and characterization of genes involved in excision of theLactococcus lactis5276. J. Bacteriol. 176:1994;2165-2171.
48. Raya R. R., Fremaux C., De Antoni G. L., Klaenhammer T. R. Site-specific integration of the temperate bacteriophage φadh intoLactobacillus gasseriattPattB. J. Bacteriol. 174:1992;5584-5592.
49. Saha S., Haggard-Ljungquist E., Nordstrum K. The Cox protein of bacteriophage P2 inhibits the formation of the repressor protein and autoregulates the early operon. EMBO J. 6:1987;3139-3199.
50. Sambrook J., Fritsch E. F., Maniatis T. Molecular Cloning: A Laboratory Manual. 1989;Cold Spring Harbor Press, Cold Spring Harbor.
51. Sanger F., Hicklen S., Coulson A. R. DNA sequencing with chain terminating inhibitors. Proc. Natl. Acad. Sci. USA. 74:1977;5463-5467.
52. Sterkenburg A., Van Leeuwen P., Wouters J. T. M. Loss of phage resistance encoded by plasmid pSK112 in chemostat cultures ofLactococcus lactiscremoris. Biochimie (Paris). 70:1988;451-456.
53. Studier W. F. A strategy for high-volume sequencing of cosmid DNAs: random and directed priming with a library of oligonucleotides. Proc. Natl. Acad. Sci. USA. 86:1989;6917-6921.
54. Suárez J. E., Chater K. F. Development of a DNA cloning system inStreptomyces. Ciencia Biol. 6:1981;99-110.
55. van de Guchte M., Daly C., Fitzgerald G. F., Arendt E. Identification ofintattPLactococcus lactis. Appl. Environ. Microbiol. 60:1994;2324-2329.
56. Vold B. S., Green C. J., Narasimhan N., Strem M., Hansen J. N. Transcriptional analysis ofBacillus subtilis. J. Biol. Chem. 263:1988;14485-14490.
57. Wei M. Q., Rush C. M., Nonma J. M., Hafner L. M., Epping R. J., Timmus P. An improved method for the transformation ofLactobacillus. J. Microbiol. Methods. 21:1995;97-109.
58. Ye Z.-H., Buranen S. L., Lee C. Y. Sequence analysis and comparison ofintxis. J. Bacteriol. 172:1990;2568-2575.