Marcus rate theory applied to enzymatic proton transfer

Biochimica et Biophysica Acta - Bioenergetics

Volumn 1458, Issue 1, 2000, Pages 88-103

  Silverman, David N ^a  

^a UNIVERSITY OF FLORIDA COLLEGE OF MEDICINE   (United States)

Author keywords

Carbon dioxide; Carbonic anhydrase; Enzyme kinetics; Marcus theory; Proton transfer

Indexed keywords

CARBON DIOXIDE; CARBONATE DEHYDRATASE;

CATALYSIS; ELECTRON TRANSPORT; ENZYME ACTIVITY; ENZYME STRUCTURE; HYDRATION; PRIORITY JOURNAL; PROTON TRANSPORT; REVIEW; THEORY;

ANIMALS; BINDING SITES; CARBONIC ANHYDRASES; ENZYMES; HUMANS; ISOENZYMES; KINETICS; MODELS, THEORETICAL; MOLECULAR STRUCTURE; PROTON-MOTIVE FORCE; PROTONS; THERMODYNAMICS; WATER;

EID: 0034640335     PISSN: 00052728     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0005-2728(00)00061-X     Document Type: Review

References (88)

1. Marcus R.A. Ann. Rev. Phys. Chem. 15:1964;155-196.
2. Winkler J.R., Gray H.B. Chem. Rev. 92:1992;369-379.
3. Rees D.C., Farrelly D. Enzymes. 19:1990;37-97.
4. McLendon G. Acc. Chem. Res. 21:1988;160-167.
5. Luecke H., Richter H.-T., Lanyi J.K. Science. 280:1998;1934-1937.
6. Yoshikawa S., et al. Science. 280:1998;1723-1729.
7. Stowell M.H.B., McPhillips T.M., Rees D.C., Soltis S.M., Abresch E., Feher G. Science. 276:1997;812-816.
8. R.P. Bell, The Proton in Chemistry, Cornell University Press, Ithaca, New York, 1973.
9. E.F. Caldin and V. Gold, Proton Transfer Reactions, J. Wiley and Sons, New York, 1975.
10. Brønsted J.N., Pederson K. Z. Phys. Chem. 108:1924;185-235.
11. A.J. Kresge, in: E. Caldin and V. Gold (Eds.), Proton-Transfer Reactions, J. Wiley and Sons, New York, 1974, pp. 179-199.
12. Toney M.D., Kirsch J.D. Science. 243:1989;1485-1488.
13. Rowlett R.S., Silverman D.N. J. Am. Chem. Soc. 101:1982;6734-6741.
14. Y. Pocker, N. Janjic and C.H. Miao, in: I. Bertini, C. Luchinat, W. Maret and M. Zeppezauer (Eds.), Zinc Enzymes, Birkhauser, Boston, MA, 1986, pp. 341-356.
15. Eigen M. Angew. Chem. Int. Edn. 3:1964;1-72.
16. Marcus R.A. J. Chem. Phys. 24:1956;966-978.
17. Marcus R.A. J. Phys. Chem. 72:1968;891-899.
18. Murdoch J.R. J. Am. Chem. Soc. 94:1972;4410-4418.
19. G.W. Koepple and A.J. Kresge, J. Chem. Soc. Chem. Comm. (1973) 371-373.
20. German E.D., Dogonadze R.R., Kuznetsov A.M., Levich V.G., Kharkats Y.I. J. Res. Inst. Catal. Hokkaido Univ. 19:1971;99-115.
21. Kresge A.J. Acc. Chem. Res. 8:1975;354-360.
22. Linskog S. Pharmacol. Ther. 74:1997;1-20.
23. Christianson D.W., Fierke C.A. Acc. Chem. Res. 29:1996;331-339.
24. Hewett-Emmett D., Tashian R.E. Mol. Phylogen. Evol. 5:1996;50-77.
25. Silverman D.N., Lindskog S. Acc. Chem. Res. 21:1988;30-36.
26. S.J. Dodgson, R.E. Tashian, G. Gros and N.D. Carter, The Carbonic Anhydrases, Plenum Press, New York, 1991.
27. Maren T.H. Physiol. Rev. 47:1967;595-781.
28. Kresge A.J., Silverman D.N. Methods Enzymol. 308:1999;276-297.
29. Silverman D.N. Methods Enzymol. 249:1995;479-503.
30. Steiner H., Jonsson B.-H., Lindskog S. Eur. J. Biochem. 59:1975;253-259.
31. Simonsson I., Jonsson B.-H., Lindskog S. Eur. J. Biochem. 93:1979;409-417.
32. Silverman D.N., Tu C.K., Lindskog S., Wynns G.C. J. Am. Chem. Soc. 101:1979;6734-6739.
33. Tu C.K., Silverman D.N., Forsman C., Jonsson B.-H., Lindskog S. Biochemistry. 28:1989;7913-7918.
34. Håkansson K., Carlsson M., Svensson L.A., Liljas A. J. Mol. Biol. 227:1992;1192-1204.
35. Nair S.K., Christianson D.W. J. Am. Chem. Soc. 113:1991;9455-9458.
36. Eriksson E.A., Jones T.A., Liljas A. Proteins Struct. Funct. Genet. 4:1988;274-282.
37. Lu D., Voth G.A. Proteins Struct. Funct. Genet. 33:1998;119-134.
38. Krebs J.F., Fierke C.A., Alexander R.S., Christianson D.W. Biochemistry. 30:1991;9153-9160.
39. Scolnick L.R., Christianson D.W. Biochemistry. 35:1996;16429-16434.
40. E. Grunwald and D. Eustace, in: E. Caldin and V. Gold (Eds.), Proton-Transfer Reactions, J. Wiley and Sons, New York, 1974, pp. 103-120.
41. Ray W.J. Biochemistry. 22:1983;4625-4637.
42. Rowlett R.S. J. Prot. Chem. 3:1984;369-393.
43. Khalifah R.G. J. Biol. Chem. 246:1971;2561-2573.
44. Silverman D.N. Methods Enzymol. 87:1982;732-752.
45. Silverman D.N., Tu C.K., Chen X., Tanhauser S.M., Kresge A.J., Laipis P.J. Biochemistry. 32:1993;10757-10762.
46. Koenig S.H., Brown R.D. Biophys. J. 35:1981;59-78.
47. Earnhardt J.N., Tu C.K., Silverman D.N. Can. J. Chem. 77:1999;726-732.
48. Ren X., Tu C.K., Laipis P.J., Silverman D.N. Biochemistry. 34:1995;8492-8498.
49. Campbell I.D., Lindskog S., White A.I. J. Mol. Biol. 98:1975;597-614.
50. LoGrasso P.V., Tu C.K., Chen X., Taoka S., Laipis P.J., Silverman D.N. Biochemistry. 32:1993;5786-5791.
51. Eriksson A.E., Liljas A. Proteins Struct. Funct. Genet. 16:1993;29-42.
52. Carter P.J., Winter G., Wilkinson A.J., Fersht A.R. Cell. 38:1984;835-840.
53. Tu C.K., Chen X., Ren X., LoGrasso P.V., Jewell D.A., Laipis P.J., Silverman D.N. J. Biol. Chem. 269:1994;23002-23006.
54. Jewell D.A., Tu C.K., Paranawithana S.R., Tanhauser S.M., LoGrasso P.V., Laipis P.J., Silverman D.N. Biochemistry. 30:1991;1484-1490.
55. Tu C.K., Paranawithana S.R., Jewell D.A., Tanhauser S.M., LoGrasso P.V., Wynns G.C., Laipis P.J., Silverman D.N. Biochemistry. 29:1990;6400-6405.
56. Liang Z., Jonsson B.-H., Lindskog S. Biochim. Biophys. Acta. 1203:1993;142-146.
57. Qian M., Tu C.K., Earnhardt J.N., Laipis P.J., Silverman D.N. Biochemistry. 36:1997;15758-15764.
58. Tu C.K., Qian M.Z., Earnhardt J.N., Laipis P.J., Silverman D.N. Biophys. J. 74:1998;3182-3189.
59. Earnhardt J.N., Qian M.Z., Tu C.K., Laipis P.J., Silverman D.N. Biochemistry. 37:1998;7649-7655.
60. L. Melander, Isotope Effects on Reaction Rates, Ronald Press, New York, 1960, p. 24.
61. Westheimer F.H. Chem. Rev. 61:1961;265-273.
62. Bergman N.-A., Chiang Y., Kresge A.J. J. Am. Chem. Soc. 100:1978;5954-5956.
63. Cox M.M., Jencks W.P. J. Am. Chem. Soc. 100:1978;5956-5957.
64. Kresge A.J., Sagatys D.S., Chem H.L. J. Am. Chem. Soc. 99:1977;7228-7233.
65. Kreevoy M.M., Oh S. J. Am. Chem. Soc. 95:1973;4805-4810.
66. Taoka S., Tu C.K., Kistler K.A., Silverman D.N. J. Biol. Chem. 269:1994;17988-17992.
67. Pines E., Magnes B.-Z., Lang M.J., Fleming G.R. Chem. Phys. Lett. 281:1997;413-420.
68. Closs G.L., Calcaterra L.T., Green N.J., Penfield K.W., Miller J.R. J. Phys. Chem. 90:1986;3673-3683.
69. K. Ando, A. Staib and J.T. Hynes, in: A. Tramer (Ed.), Fast Elementary Processes in Chemical and Biological Systems, American Instiute of Physics, pp. 326-322.
70. Bernasconi C.F. Acc. Chem. Res. 25:1992;9-16.
71. Thrane K., Jacobsen R.H., Jepsen P.U., Keiding S.R. Chem. Phys. Lett. 240:1995;330-333.
72. Scheiner S., Yi M. J. Phys. Chem. 100:1996;9235-9241.
73. Lu D., Voth G.A. J. Am. Chem. Soc. 120:1998;4006-4014.
74. Guthrie J.P. Can. J. Chem. 68:1990;1643-1652.
75. Guthrie J.P. J. Am. Chem. Soc. 118:1996;12886-12890.
76. Hine J. J. Am. Chem. Soc. 94:1972;5766-5771.
77. Agmon N. Chem. Phys. Lett. 244:1995;456-462.
78. Schmitt U.W., Voth G.A. J. Phys. Chem. 102:1998;5547-5551.
79. Nagle J.F., Morowitz H.J. Proc. Natl. Acad. Sci. USA. 75:1978;298-302.
80. Pomès R., Roux B. Biophys. J. 71:1996;19-39.
81. Briganti F., Mangani S., Orioli P., Scozzafava A., Vernaglione G., Supuran C.T. Biochemistry. 36:1997;10384-10392.
82. Kim Y., Truhlar D.G., Kreevoy M.M. J. Am. Chem. Soc. 113:1991;7837-7847.
83. Åqvist J., Warshel A. J. Mol. Biol. 244:1992;7-14.
84. Ghannam A.F., Tsen W., Rowlett R.S. J. Biol. Chem. 261:1986;1164-1169.
85. Jackman J.E., Merz K.M., Fierke C.A. Biochemistry. 35:1996;16421-16428.
86. Warshel A., Hwang J.K., Åqvist J. Faraday Discuss. 93:1992;225-238.
87. Earnhardt J.N., Wright S.K., Qian M.Z., Tu C.K., Laipis P.J., Viola R.E., Silverman D.N. Arch. Biochem. Biophys. 361:1999;264-270.
88. Peters K.S., Cashin A., Timbers P. J. Am. Chem. Soc. 122:2000;107-113.