-
1
-
-
0025345415
-
Intermediates in the folding reactions of small proteins
-
Kim, P.S., Baldwin, R.L. Intermediates in the folding reactions of small proteins. Annu. Rev. Biochem. 59:631-660, 1991.
-
(1991)
Annu. Rev. Biochem.
, vol.59
, pp. 631-660
-
-
Kim, P.S.1
Baldwin, R.L.2
-
2
-
-
0027313673
-
Pathways of protein folding
-
Matthews, C.R. Pathways of protein folding. Annu. Rev. Biochem. 62:653-683, 1993.
-
(1993)
Annu. Rev. Biochem.
, vol.62
, pp. 653-683
-
-
Matthews, C.R.1
-
3
-
-
0028227065
-
Kinetic and equilibrium intermediates in protein folding
-
Ptitsyn, O.B. Kinetic and equilibrium intermediates in protein folding. Protein Eng. 7:593-596, 1994.
-
(1994)
Protein Eng.
, vol.7
, pp. 593-596
-
-
Ptitsyn, O.B.1
-
4
-
-
0029090502
-
Ultrafast thermally induced unfolding of RNase A
-
Phillips, C.M., Mizutani, Y., Hochstrasser, R.M. Ultrafast thermally induced unfolding of RNase A. Proc. Natl. Acad. Sci. U.S.A. 92:7292-7296, 1995.
-
(1995)
Proc. Natl. Acad. Sci. U.S.A.
, vol.92
, pp. 7292-7296
-
-
Phillips, C.M.1
Mizutani, Y.2
Hochstrasser, R.M.3
-
5
-
-
0030046906
-
Fast events in protein folding: Helix melting and formation in a small peptide
-
Williams, S., Causgrove, T.P., Gilmanshin, R., Fang, K.S., Callender, R.H., Woodruff, W.H., Dyer, R.B. Fast events in protein folding: Helix melting and formation in a small peptide. Biochemistry 35:691-697, 1996.
-
(1996)
Biochemistry
, vol.35
, pp. 691-697
-
-
Williams, S.1
Causgrove, T.P.2
Gilmanshin, R.3
Fang, K.S.4
Callender, R.H.5
Woodruff, W.H.6
Dyer, R.B.7
-
6
-
-
0029973119
-
Direct observation of fast protein folding: The initial collapse of apomyoglobin
-
Ballew, R.M., Sabelko, J., Gruebele, M. Direct observation of fast protein folding: The initial collapse of apomyoglobin. Proc. Natl. Acad. Sci. U.S.A. 93:5759-5764, 1996.
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 5759-5764
-
-
Ballew, R.M.1
Sabelko, J.2
Gruebele, M.3
-
7
-
-
0024278572
-
Folding of immunogenic peptide fragments of proteins in water solutions. II. The nascent helix
-
Dyson, H.J., Rance, M., Houghten, R.A., Wright, P.E., Lerner, R.A. Folding of immunogenic peptide fragments of proteins in water solutions. II. The nascent helix. J. Mol. Biol. 201:201-217, 1988.
-
(1988)
J. Mol. Biol.
, vol.201
, pp. 201-217
-
-
Dyson, H.J.1
Rance, M.2
Houghten, R.A.3
Wright, P.E.4
Lerner, R.A.5
-
8
-
-
0026768829
-
Folding of peptide fragments comprising the complete sequence of proteins. Models for the initiation of protein folding I. Myohemerythrin
-
Dyson, J.H., Merutka, G., Waltho, J.P., Lerner, R.A., Wright, P.E. Folding of peptide fragments comprising the complete sequence of proteins. Models for the initiation of protein folding I. Myohemerythrin. J. Mol. Biol. 226:795-817, 1992.
-
(1992)
J. Mol. Biol.
, vol.226
, pp. 795-817
-
-
Dyson, J.H.1
Merutka, G.2
Waltho, J.P.3
Lerner, R.A.4
Wright, P.E.5
-
9
-
-
0025904730
-
Defining solution conformations of small linear peptides
-
Dyson, J.H., Wright, P.E. Defining solution conformations of small linear peptides. Annu. Rev. Biophys. Chem. 20:519-538, 1991.
-
(1991)
Annu. Rev. Biophys. Chem.
, vol.20
, pp. 519-538
-
-
Dyson, J.H.1
Wright, P.E.2
-
10
-
-
0027364930
-
Dissecting the structure of a partially folded protein: Circular dichroism and nuclear magnetic resonance studies of peptides from ubiquitin
-
Cox, J.P.L., Evans, P.A., Packman, L.C., Williams, D.H., Woolfson, D.N. Dissecting the structure of a partially folded protein: Circular dichroism and nuclear magnetic resonance studies of peptides from ubiquitin. J. Mol. Biol. 234:483-492, 1993.
-
(1993)
J. Mol. Biol.
, vol.234
, pp. 483-492
-
-
Cox, J.P.L.1
Evans, P.A.2
Packman, L.C.3
Williams, D.H.4
Woolfson, D.N.5
-
11
-
-
0000349003
-
NMR evidence of a short linear peptide that folds into a β-hairpin in aqueous solution
-
Blanco, F.J., Jiménez, M.A., Herranz, J., Rico, M., Santoro, J., Nieto, J.L. NMR evidence of a short linear peptide that folds into a β-hairpin in aqueous solution. J. Am. Chem. Soc. 115:5887-5888, 1993.
-
(1993)
J. Am. Chem. Soc.
, vol.115
, pp. 5887-5888
-
-
Blanco, F.J.1
Jiménez, M.A.2
Herranz, J.3
Rico, M.4
Santoro, J.5
Nieto, J.L.6
-
13
-
-
0028500779
-
A short linear peptide that folds into a native stable β-hairpin in aqueous solution
-
Blanco, F.J., Rivas, G., Serrano, L. A short linear peptide that folds into a native stable β-hairpin in aqueous solution. Nature Struct. Biol. 1:584-590, 1994.
-
(1994)
Nature Struct. Biol.
, vol.1
, pp. 584-590
-
-
Blanco, F.J.1
Rivas, G.2
Serrano, L.3
-
14
-
-
0028865129
-
A short linear peptide derived from the N-terminal sequence of ubiquitin folds into a water stable non-native β-hairpin
-
Searle, M.S., Williams, D.H., Packman, L.C. A short linear peptide derived from the N-terminal sequence of ubiquitin folds into a water stable non-native β-hairpin. Nature Struct. Biol. 2:999-1006, 1995.
-
(1995)
Nature Struct. Biol.
, vol.2
, pp. 999-1006
-
-
Searle, M.S.1
Williams, D.H.2
Packman, L.C.3
-
15
-
-
0030002295
-
Native-like β-hairpin structure in an isolated fragment from ferrodoxin: NMR and CD studies of solvent effects on the N-terminal 20 residues
-
Searle, M.S., Zerella, R., Williams, D.H., Packman, L.C. Native-like β-hairpin structure in an isolated fragment from ferrodoxin: NMR and CD studies of solvent effects on the N-terminal 20 residues. Protein Eng. 9:559-565, 1996.
-
(1996)
Protein Eng.
, vol.9
, pp. 559-565
-
-
Searle, M.S.1
Zerella, R.2
Williams, D.H.3
Packman, L.C.4
-
16
-
-
0029891313
-
De novo design and structural analysis of a model β-hairpin peptide system
-
Ramirez-Alvarado, M., Blanco, F.J., Serrano, L. De novo design and structural analysis of a model β-hairpin peptide system. Nature Struct. Biol. 3:604-611, 1996.
-
(1996)
Nature Struct. Biol.
, vol.3
, pp. 604-611
-
-
Ramirez-Alvarado, M.1
Blanco, F.J.2
Serrano, L.3
-
17
-
-
0030334822
-
Conformational investigation of designed short linear peptides able to fold into β-hairpin structures in aqueous solution
-
de Alba, E., Jiménez, M.A., Rico, M., Nieto, J.L. Conformational investigation of designed short linear peptides able to fold into β-hairpin structures in aqueous solution. Fold Design 1:133-144, 1996.
-
(1996)
Fold Design
, vol.1
, pp. 133-144
-
-
De Alba, E.1
Jiménez, M.A.2
Rico, M.3
Nieto, J.L.4
-
18
-
-
0030068825
-
Interactions contributing to the formation of a β-hairpin-like structure in a small peptide
-
Sieber, V., Moe, G.R. Interactions contributing to the formation of a β-hairpin-like structure in a small peptide. Biochemistry 35:181-188, 1996.
-
(1996)
Biochemistry
, vol.35
, pp. 181-188
-
-
Sieber, V.1
Moe, G.R.2
-
19
-
-
0026563495
-
The folding of an enzyme VI. The folding pathway of barnase: Comparison with theoretical models
-
Serrano, L., Matouschek, A., Fersht, A.R. The folding of an enzyme VI. The folding pathway of barnase: Comparison with theoretical models. J. Mol. Biol. 224:847-859, 1992.
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 847-859
-
-
Serrano, L.1
Matouschek, A.2
Fersht, A.R.3
-
20
-
-
0028806684
-
A comparison of the pH, urea and temperature-denatured states of barnase by heteronuclear NMR: Implications for the initiation of protein folding
-
Arcus. V.L., Vuilleumier, S., Freund, S.M.V., Bycroft, M., Fersht, A.R. A comparison of the pH, urea and temperature-denatured states of barnase by heteronuclear NMR: Implications for the initiation of protein folding. J. Mol. Biol. 254:305-321, 1995.
-
(1995)
J. Mol. Biol.
, vol.254
, pp. 305-321
-
-
Arcus, V.L.1
Vuilleumier, S.2
Freund, S.M.V.3
Bycroft, M.4
Fersht, A.R.5
-
21
-
-
0030342726
-
An NMR study on the β-hairpin region of barnase
-
Neira, J.L., Fersht, A.R. An NMR study on the β-hairpin region of barnase. Fold Design 1:231-241, 1996.
-
(1996)
Fold Design
, vol.1
, pp. 231-241
-
-
Neira, J.L.1
Fersht, A.R.2
-
22
-
-
0030020571
-
Are turns required for the folding of ribonuclease T1?
-
Garrett, J.B., Mullins, L.S., Raushel, F.M. Are turns required for the folding of ribonuclease T1? Protein Sci. 5:204-211, 1996.
-
(1996)
Protein Sci.
, vol.5
, pp. 204-211
-
-
Garrett, J.B.1
Mullins, L.S.2
Raushel, F.M.3
-
23
-
-
0027405357
-
Cooperativity in protein-folding kinetics
-
Dill, K.A., Fiebig, K.M., Chan, H.S. Cooperativity in protein-folding kinetics. Proc. Natl. Acad. Sci. U.S.A. 90:1942-1946, 1993.
-
(1993)
Proc. Natl. Acad. Sci. U.S.A.
, vol.90
, pp. 1942-1946
-
-
Dill, K.A.1
Fiebig, K.M.2
Chan, H.S.3
-
24
-
-
0001193711
-
The effects of internal constraints on the configurations of chain molecules
-
Chan, H.S., Dill, K.A. The effects of internal constraints on the configurations of chain molecules. J. Chem. Phys. 92:3118-3135, 1990.
-
(1990)
J. Chem. Phys.
, vol.92
, pp. 3118-3135
-
-
Chan, H.S.1
Dill, K.A.2
-
26
-
-
0027190613
-
Kinetics of protein folding of the all-β sheet protein interleukin-1β
-
Varley, P., Gronenborn, A., Christensen, H., Wingfield, P.T., Pain, R.H., Clore, G.M. Kinetics of protein folding of the all-β sheet protein interleukin-1β. Science 260:1110-1113, 1993.
-
(1993)
Science
, vol.260
, pp. 1110-1113
-
-
Varley, P.1
Gronenborn, A.2
Christensen, H.3
Wingfield, P.T.4
Pain, R.H.5
Clore, G.M.6
-
27
-
-
0001842441
-
Adding backbone to protein folding: Why proteins are polypeptides
-
Honig, B., Cohen, F.E. Adding backbone to protein folding: Why proteins are polypeptides. Fold Design 1:r17-r20, 1996.
-
(1996)
Fold Design
, vol.1
-
-
Honig, B.1
Cohen, F.E.2
-
28
-
-
0026305716
-
Protein folding: Effect of packing density on chain conformation
-
Gregoret, L.M., Cohen, F.E. Protein folding: Effect of packing density on chain conformation. J. Mol. Biol. 219: 109-122, 1991.
-
(1991)
J. Mol. Biol.
, vol.219
, pp. 109-122
-
-
Gregoret, L.M.1
Cohen, F.E.2
-
29
-
-
0029001090
-
Direct NMR evidence for an intermediate preceding the rate-limiting step in the unfolding of ribonuclease A
-
Kiefhaber, T., Labhardt, A.M., Baldwin, R.L. Direct NMR evidence for an intermediate preceding the rate-limiting step in the unfolding of ribonuclease A. Nature 375:513-515, 1995.
-
(1995)
Nature
, vol.375
, pp. 513-515
-
-
Kiefhaber, T.1
Labhardt, A.M.2
Baldwin, R.L.3
-
30
-
-
0027992140
-
The origins of protein secondary structure: Effects of packing density and hydrogen bonding studied by a fast conformational search
-
Hunt, N.G., Gregoret, L.M., Cohen, F.E. The origins of protein secondary structure: Effects of packing density and hydrogen bonding studied by a fast conformational search. J. Mol. Biol. 241:214-225, 1994.
-
(1994)
J. Mol. Biol.
, vol.241
, pp. 214-225
-
-
Hunt, N.G.1
Gregoret, L.M.2
Cohen, F.E.3
-
31
-
-
0029150955
-
Free energy determinants of secondary structure formation: II. Antiparallel β-sheets
-
Yang, A-S, Honig, B. Free energy determinants of secondary structure formation: II. Antiparallel β-sheets. J. Mol. Biol. 252:366-376, 1995.
-
(1995)
J. Mol. Biol.
, vol.252
, pp. 366-376
-
-
Yang, A.-S.1
Honig, B.2
-
32
-
-
84986512474
-
CHARMM: A program for macromolecular energy minimization and molecular dynamics
-
Brooks, B.R., Bruccoleri, R.E., Olafsson, D., States, D., Swaminathan, S., Karplus, M. CHARMM: A program for macromolecular energy minimization and molecular dynamics. J. Comp. Chem. 4:187-217, 1983.
-
(1983)
J. Comp. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafsson, D.3
States, D.4
Swaminathan, S.5
Karplus, M.6
-
33
-
-
33646940952
-
Numerical integration of the cartesian equation of motion of a system with constraints: Molecular dynamics of n-alkanes
-
Ryckaert, J.P., Cicotti, G., Berendsen, H.J. Numerical integration of the cartesian equation of motion of a system with constraints: Molecular dynamics of n-alkanes. J. Comp. Phys. 23:327-341, 1977.
-
(1977)
J. Comp. Phys.
, vol.23
, pp. 327-341
-
-
Ryckaert, J.P.1
Cicotti, G.2
Berendsen, H.J.3
-
34
-
-
0019944172
-
Molecular structure of a new family of ribonucleases
-
Mauguen, Y., Hartley, R.W., Dodson, G.G., Dodson, E.J., Bricogne, G., Chothia, C., Jack, A. Molecular structure of a new family of ribonucleases. Nature 297:162-164, 1982.
-
(1982)
Nature
, vol.297
, pp. 162-164
-
-
Mauguen, Y.1
Hartley, R.W.2
Dodson, G.G.3
Dodson, E.J.4
Bricogne, G.5
Chothia, C.6
Jack, A.7
-
35
-
-
0029084123
-
Unfolding simulations of the 85-102 β-hairpin of barnase
-
Pugliese, L., Prévost, M., Wodak, S.J. Unfolding simulations of the 85-102 β-hairpin of barnase. J. Mol. Biol. 251:432-447, 1995.
-
(1995)
J. Mol. Biol.
, vol.251
, pp. 432-447
-
-
Pugliese, L.1
Prévost, M.2
Wodak, S.J.3
-
36
-
-
0018350099
-
Three-fold structural pattern in the soybean trypsin inhibitor (Kunitz)
-
McLachlan, A.D. Three-fold structural pattern in the soybean trypsin inhibitor (Kunitz). J. Mol. Biol. 128:49-79, 1979.
-
(1979)
J. Mol. Biol.
, vol.128
, pp. 49-79
-
-
McLachlan, A.D.1
-
38
-
-
0001661947
-
Analysis of data from computer simulations on macromolecules using the CERAM package
-
Delhaise, P., Van Belle, D., Bardiaux, M., Alard, P., Hamers, P., Van Cutsem, E., Wodak, S.J. Analysis of data from computer simulations on macromolecules using the CERAM package. J. Mol. Graph. 3:116-119, 1985.
-
(1985)
J. Mol. Graph.
, vol.3
, pp. 116-119
-
-
Delhaise, P.1
Van Belle, D.2
Bardiaux, M.3
Alard, P.4
Hamers, P.5
Van Cutsem, E.6
Wodak, S.J.7
-
39
-
-
0020997912
-
Dictionary of protein secondary structure, pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch, W., Sander, C. Dictionary of protein secondary structure, pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22:2577-2637, 1983.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
40
-
-
0029863769
-
Automatic classification and analysis of αα-turn motifs in proteins
-
Wintjens, R.T., Rooman, M.J., Wodak, S.J. Automatic classification and analysis of αα-turn motifs in proteins. J. Mol. Biol. 255:235-253, 1996.
-
(1996)
J. Mol. Biol.
, vol.255
, pp. 235-253
-
-
Wintjens, R.T.1
Rooman, M.J.2
Wodak, S.J.3
-
41
-
-
0025113022
-
β-Turns and their distortions: A proposed new nomenclature
-
Wilmot, C.M., Thornton, J.M. β-Turns and their distortions: A proposed new nomenclature. Protein Eng. 3:479-493, 1990.
-
(1990)
Protein Eng.
, vol.3
, pp. 479-493
-
-
Wilmot, C.M.1
Thornton, J.M.2
-
42
-
-
0028883794
-
Determination of the conformation of folding initiation sites in proteins by computer simulation
-
Avblej, F., Moult, J. Determination of the conformation of folding initiation sites in proteins by computer simulation. Proteins 23:129-141, 1995.
-
(1995)
Proteins
, vol.23
, pp. 129-141
-
-
Avblej, F.1
Moult, J.2
-
44
-
-
0030067976
-
Importance of two buried salt bridges in the stability and folding pathway of barnase
-
Tissot, A.C., Vuilleumier, S., Fersht, A.R. Importance of two buried salt bridges in the stability and folding pathway of barnase. Biochemistry 35:6786-6794, 1996.
-
(1996)
Biochemistry
, vol.35
, pp. 6786-6794
-
-
Tissot, A.C.1
Vuilleumier, S.2
Fersht, A.R.3
-
45
-
-
0027411181
-
Thermodynamic β-sheet propensities measured using a zinc-finger host peptide
-
Kim, C.A., Berg, J.M. Thermodynamic β-sheet propensities measured using a zinc-finger host peptide. Nature 362:267-270, 1993.
-
(1993)
Nature
, vol.362
, pp. 267-270
-
-
Kim, C.A.1
Berg, J.M.2
-
46
-
-
0028176595
-
Measurement of the β-sheet-forming propensities of amino acids
-
Minor, D.L., Kim, P.S. Measurement of the β-sheet-forming propensities of amino acids. Nature 367:660-663, 1994.
-
(1994)
Nature
, vol.367
, pp. 660-663
-
-
Minor, D.L.1
Kim, P.S.2
-
47
-
-
0028175780
-
A thermodynamic scale for the β-sheet forming tendencies of the amino acids
-
Smith, C.K., Withka, J.M., Regan, L. A thermodynamic scale for the β-sheet forming tendencies of the amino acids. Biochemistry 33:5510-5517, 1994.
-
(1994)
Biochemistry
, vol.33
, pp. 5510-5517
-
-
Smith, C.K.1
Withka, J.M.2
Regan, L.3
-
48
-
-
0022394507
-
The immunodominant site of a synthetic immunogen has a conformational preference in water for a type-II reverse turn
-
Dyson, J.H., Cross, K.J., Houghten, R.A., Wilson, I.A., Wright, P.E., Lerner, R.A. The immunodominant site of a synthetic immunogen has a conformational preference in water for a type-II reverse turn. Nature 318:480-483, 1985.
-
(1985)
Nature
, vol.318
, pp. 480-483
-
-
Dyson, J.H.1
Cross, K.J.2
Houghten, R.A.3
Wilson, I.A.4
Wright, P.E.5
Lerner, R.A.6
-
49
-
-
0024556397
-
Transfer of a β-turn structure to a new protein context
-
Hynes, T.R., Kautz, R.A., Goodman, M.A., Gill, J.F., Fox, R.O. Transfer of a β-turn structure to a new protein context. Nature 339:73-76, 1989.
-
(1989)
Nature
, vol.339
, pp. 73-76
-
-
Hynes, T.R.1
Kautz, R.A.2
Goodman, M.A.3
Gill, J.F.4
Fox, R.O.5
-
50
-
-
0023626273
-
Protein folding: Hypotheses and experiments
-
Ptitsyn, O.B. Protein folding: Hypotheses and experiments. J. Protein Chem. 6:273-293, 1987.
-
(1987)
J. Protein Chem.
, vol.6
, pp. 273-293
-
-
Ptitsyn, O.B.1
-
51
-
-
0026244229
-
MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures
-
Kraulis, P.J. MOLSCRIPT: A program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallogr. 24:946-950, 1991.
-
(1991)
J. Appl. Crystallogr.
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
|