Updated map of duplicated regions in the yeast genome

Gene

Volumn 238, Issue 1, 1999, Pages 253-261

  Seoighe, Cathal ^a   Wolfe, Kenneth H ^a  

^a TRINITY COLLEGE DUBLIN   (Ireland)

Author keywords

Gene duplication; Gene order; Kluyveromyces lactis; Molecular evolution; Polyploidy; Saccharomyces cerevisiae

Indexed keywords

ARTICLE; CONTROLLED STUDY; GENE; GENE DUPLICATION; GENE ORDER; GENOME; KLUYVEROMYCES; MOLECULAR EVOLUTION; NONHUMAN; POLYPLOIDY; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; YEAST;

CHROMOSOMES, FUNGAL; GENE DUPLICATION; GENOME, FUNGAL; KLUYVEROMYCES; SACCHAROMYCES CEREVISIAE;

FUNGI; KLUYVEROMYCES; KLUYVEROMYCES LACTIS; MYXOGASTRIA; SACCHAROMYCES CEREVISIAE;

EID: 0032834867     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(99)00319-4     Document Type: Article

References (31)

1. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215:1990;403-410.
2. Banfield, D.K., 1998. DNA sequence of the SFT1 gene from Kluyveromyces lactis, GenBank/EMBL/DDBJ database accession number AF072674.
3. Coissac E., Maillier E., Netter P. A comparative study of duplications in bacteria and eukaryotes: the importance of telomeres. Mol. Biol. Evol. 14:1997;1062-1074.
4. Dietrich F.S., Voegeli S., Gaffney T., Mohr C., Rebischung C., Wing R., Choi S., Goff S., Philippsen P. Gene map of chromosome I of Ashbya gossypii. Curr. Genet. 35:1999;233.
5. Goffeau A., Barrell B.G., Bussey H., Davis R.W., Dujon B., et al. Life with 6000 genes. Science. 274:1996;546-547.
6. Henikoff S., Henikoff J.G. Amino acid substitution matrices from protein blocks. Proc. Natl. Acad. Sci. USA. 89:1992;10915-10919.
7. Hikkel I., Gbelska Y., Subik J. Identification and functional analysis of a Kluyveromyces lactis homologue of the SPT4 gene of Saccharomyces cerevisiae. Curr. Genet. 34:1998;375-378.
8. Hughes J.M., Konings D.A., Cesareni G. The yeast homologue of U3 snRNA. EMBO J. 6:1987;2145-2155.
9. James S.A., Cai J., Roberts I.N., Collins M.D. A phylogenetic analysis of the genus Saccharomyces based on 18S rRNA gene sequences: description of Saccharomyces kunashirensis sp. nov. and Saccharomyces martiniae sp. nov. Int. J. Syst. Bacteriol. 47:1997;453-460.
10. Johnston M., Hillier L., Riles L., Albermann K., Andre B., et al. The nucleotide sequence of Saccharomyces cerevisiae chromosome XII. Nature. 387:(Suppl.):1997;87-90.
11. Keogh R.S., Seoighe C., Wolfe K.H. Evolution of gene order and chromosome number in Saccharomyces, Kluyveromyces and related fungi. Yeast. 14:1998;443-457.
12. Kurtzman C.P., Robnett C.J. Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences. Antonie Van Leeuwenhoek. 73:1998;331-371.
13. Lalo D., Stettler S., Mariotte S., Slonimski P.P., Thuriaux P. Une duplication fossile entre les régions centromériques de deux chromosomes chez la levure. C.R. Acad. Sci. Paris. 316:1993;367-373.
14. Lee, J.M., Greenleaf, A.L., 1995. Kluyveromyces lactis CTD kinase largest subunit (CTK1) gene, GenBank/EMBL/DDBJ database accession number U24219.
15. Lodi T., Goffrini P., Bolondi I., Ferrero I. Transcriptional regulation of the KlDLD gene, encoding the mitochondrial enzyme D-lactate ferricytochrome c oxidoreductase in Kluyveromyces lactis: effect of Klhap2 and fog mutations. Curr. Genet. 34:1998;12-20.
16. McCullough M.J., Clemons K.V., McCusker J.H., Stevens D.A. Intergenic transcribed spacer PCR ribotyping for differentiation of Saccharomyces species and interspecific hybrids. J. Clin. Microbiol. 36:1998;1035-1038.
17. Melnick L., Sherman F. The gene clusters ARC and COR on chromosomes 5 and 10, respectively, of Saccharomyces cerevisiae share a common ancestry. J. Mol. Biol. 233:1993;372-388.
18. Mewes H.W., Albermann K., Bähr M., Frishman D., Gleissner A., et al. Overview of the yeast genome. Nature. 387:(Suppl.):1997;7-65.
19. Ozier-Kalogeropoulos O., Malpertuy A., Boyer J., Tekaia F., Dujon B. Random exploration of the Kluyveromyces lactis genome and comparison with that of Saccharomyces cerevisiae. Nucleic Acids Res. 26:1998;5511-5524.
20. Pearson W.R., Lipman D.J. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA. 85:1988;2444-2448.
21. Philippsen P., Kleine K., Pohlmann R., Dusterhoft A., Hamberg K., et al. The nucleotide sequence of Saccharomyces cerevisiae chromosome XIV and its evolutionary implications. Nature. 387:(Suppl.):1997;93-98.
22. Ramil E., Freire-Picos M.A., Cerdan M.E. Characterization of promoter regions involved in high expression of KlCYC1. Eur. J. Biochem. 256:1998;67-74.
23. Rodriguez-Belmonte E., Gonzalez-Siso I., Cerdan E. The Kluyveromyces lactis gene KLGSK-3 combines functions which in Saccharomyces cerevisiae are performed by MCK1 and MSD1. Curr. Genet. 33:1998;262-267.
24. Seoighe C., Wolfe K.H. Extent of genomic rearrangement after genome duplication in yeast. Proc. Natl. Acad. Sci. USA. 95:1998;4447-4452.
25. Shpaer E.G., Robinson M., Yee D., Candlin J.D., Mines R., Hunkapiller T. Sensitivity and selectivity in protein similarity searches: a comparison of Smith-Waterman in hardware to BLAST and FASTA. Genomics. 38:1996;179-191.
26. Skrabanek L., Wolfe K.H. Eukaryote genome duplication - where's the evidence? Curr. Opin. Genet. Devel. 8:1998;694-700.
27. Smith T.F., Waterman M.S. Identification of common molecular subsequences. J. Mol. Biol. 147:1981;195-197.
28. Winkler, A., Goedegebure, R., Zonneveld, B.J.M., Steensma, H.Y., Hooykaas, P.J.J., 1997. Kluyveromyces lactis SKP1 can complement a mutation in CTF13, a gene coding for a centromeric protein of Saccharomyces cerevisiae, GenBank/EMBL/DDBJ database accession number AF012338.
29. Wolfe K.H., Shields D.C. Molecular evidence for an ancient duplication of the entire yeast genome. Nature. 387:1997;708-713.
30. Wootton J.C., Federhen S. Analysis of compositionally biased regions in sequence databases. Methods Enzymol. 266:1996;554-571.
31. Yuan Y.P., Eulenstein O., Vingron M., Bork P. Towards detection of orthologues in sequence databases. Bioinformatics. 14:1998;285-289.