-
1
-
-
0025946109
-
Two components of Saccharomyces cerevisiae transcription factor IIIB (TFIIIB) are stereospecifically located upstream of a tRNA gene and interact with the second-largest subunit of TFIIIC
-
Bartholomew B., Kassavetis G. A., Braun B. R., Geiduschek E. P. Two components of Saccharomyces cerevisiae transcription factor IIIB (TFIIIB) are stereospecifically located upstream of a tRNA gene and interact with the second-largest subunit of TFIIIC. Mol. Cell. Biol. 11:1991;5181-5189.
-
(1991)
Mol. Cell. Biol.
, vol.11
, pp. 5181-5189
-
-
Bartholomew, B.1
Kassavetis, G.A.2
Braun, B.R.3
Geiduschek, E.P.4
-
3
-
-
0037525078
-
Multiple states of protein-DNA interaction in the assembly of transcription complexes on Saccharomyces cerevisiae 5 S ribosomal RNA genes
-
Braun B. R., Riggs D. R., Kassavetis G. A., Geiduschek E. P. Multiple states of protein-DNA interaction in the assembly of transcription complexes on Saccharomyces cerevisiae 5 S ribosomal RNA genes. Proc. Natl Acad. Sci. USA. 86:1989;2530-2534.
-
(1989)
Proc. Natl Acad. Sci. USA
, vol.86
, pp. 2530-2534
-
-
Braun, B.R.1
Riggs, D.R.2
Kassavetis, G.A.3
Geiduschek, E.P.4
-
4
-
-
0026540237
-
Bending of the Saccharomyces cerevisiae 5 S rRNA gene in transcription factor complexes
-
Braun B. R., Kassavetis G. A., Geiduschek E. P. Bending of the Saccharomyces cerevisiae 5 S rRNA gene in transcription factor complexes. J. Biol. Chem. 267:1992;22562-22569.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 22562-22569
-
-
Braun, B.R.1
Kassavetis, G.A.2
Geiduschek, E.P.3
-
5
-
-
0020385863
-
Mechanics of sequence-dependent stacking of bases in B -DNA
-
Calladine C. R. Mechanics of sequence-dependent stacking of bases in B -DNA. J. Mol. Biol. 161:1982;343-352.
-
(1982)
J. Mol. Biol.
, vol.161
, pp. 343-352
-
-
Calladine, C.R.1
-
7
-
-
0031952187
-
Architecture of protein and DNA contacts within the TFIIIB-DNA complex
-
Colbert T., Lee S., Schimmack G., Hahn S. Architecture of protein and DNA contacts within the TFIIIB-DNA complex. Mol. Cell. Biol. 18:1998;1682-1691.
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 1682-1691
-
-
Colbert, T.1
Lee, S.2
Schimmack, G.3
Hahn, S.4
-
8
-
-
0001824401
-
Sequence-dependent B-DNA conformation in crystals and in protein complexes
-
R. H. Sarma, & M. H. Sarma. Schenectady: Adenine Press
-
Dickerson R. E. Sequence-dependent B-DNA conformation in crystals and in protein complexes. Sarma R. H., Sarma M. H. Structure, Motion, Interaction and Expression of Biological Macromolecules. 1998;17-36 Adenine Press, Schenectady.
-
(1998)
Structure, Motion, Interaction and Expression of Biological Macromolecules
, pp. 17-36
-
-
Dickerson, R.E.1
-
9
-
-
0026335587
-
Hydroxyl radical footprinting
-
Dixon W. J., Hayes J. J., Levin J. R., Weidner M. F., Dombroski B. A., Tullius T. D. Hydroxyl radical footprinting. Methods Enzymol. 208:1991;380-413.
-
(1991)
Methods Enzymol.
, vol.208
, pp. 380-413
-
-
Dixon, W.J.1
Hayes, J.J.2
Levin, J.R.3
Weidner, M.F.4
Dombroski, B.A.5
Tullius, T.D.6
-
10
-
-
0028838080
-
TFIIIB placement on a yeast U6 RNA gene in vivo is directed primarily by TFIIIC rather than by sequence specific DNA contacts
-
Gerlach V. L., Whitehall S. K., Geiduschek E. P., Brow D. A. TFIIIB placement on a yeast U6 RNA gene in vivo is directed primarily by TFIIIC rather than by sequence specific DNA contacts. Mol. Cell. Biol. 15:1995;1455-1466.
-
(1995)
Mol. Cell. Biol.
, vol.15
, pp. 1455-1466
-
-
Gerlach, V.L.1
Whitehall, S.K.2
Geiduschek, E.P.3
Brow, D.A.4
-
11
-
-
0027536101
-
Crystal structure of C-A-T-G-G-C-C-A-T-G and its implications for A-tract bending models
-
Goodsell D. S., Kopka M. L., Cascio D., Dickerson R. E. Crystal structure of C-A-T-G-G-C-C-A-T-G and its implications for A-tract bending models. Proc. Natl Acad. Sci. USA. 90:1993;2930-2934.
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 2930-2934
-
-
Goodsell, D.S.1
Kopka, M.L.2
Cascio, D.3
Dickerson, R.E.4
-
12
-
-
0028225644
-
The crystal structure of C-C-A-T-T-A-A-T-G-G: Implications for bending of B -DNA at T-A steps
-
Goodsell D. S., Kaczor-Grzeskowiak M., Dickerson R. E. The crystal structure of C-C-A-T-T-A-A-T-G-G: implications for bending of B -DNA at T-A steps. J. Mol. Biol. 239:1994;79-96.
-
(1994)
J. Mol. Biol.
, vol.239
, pp. 79-96
-
-
Goodsell, D.S.1
Kaczor-Grzeskowiak, M.2
Dickerson, R.E.3
-
13
-
-
0032475962
-
Affinity, stability and polarity of binding of the TATA binding protein governed by flexure at the TATA box
-
Grove A., Galeone A., Yu E., Mayol L., Geiduschek E. P. Affinity, stability and polarity of binding of the TATA binding protein governed by flexure at the TATA box. J. Mol. Biol. 282:1998;731-739.
-
(1998)
J. Mol. Biol.
, vol.282
, pp. 731-739
-
-
Grove, A.1
Galeone, A.2
Yu, E.3
Mayol, L.4
Geiduschek, E.P.5
-
14
-
-
0023663356
-
Interactions of T7 RNA polymerase with T7 late promoters measured by footprinting with methidiumpropyl-EDTA-iron(II)
-
Gunderson S. I., Chapman K. A., Burgess R. R. Interactions of T7 RNA polymerase with T7 late promoters measured by footprinting with methidiumpropyl-EDTA-iron(II). Biochemistry. 26:1987;1539-1546.
-
(1987)
Biochemistry
, vol.26
, pp. 1539-1546
-
-
Gunderson, S.I.1
Chapman, K.A.2
Burgess, R.R.3
-
15
-
-
0024366475
-
The missing nucleoside experiment: A new technique to study recognition of DNA by protein
-
Hayes J. J., Tullius T. D. The missing nucleoside experiment: a new technique to study recognition of DNA by protein. Biochemistry. 28:1989;9521-9527.
-
(1989)
Biochemistry
, vol.28
, pp. 9521-9527
-
-
Hayes, J.J.1
Tullius, T.D.2
-
16
-
-
0028230457
-
Identical components of yeast transcription factor IIIB are required and sufficient for transcription of TATA box-containing and TATA-less genes
-
Joazeiro C. A. P., Kassavetis G. A., Geiduschek E. P. Identical components of yeast transcription factor IIIB are required and sufficient for transcription of TATA box-containing and TATA-less genes. Mol. Cell. Biol. 14:1994;2798-2808.
-
(1994)
Mol. Cell. Biol.
, vol.14
, pp. 2798-2808
-
-
Joazeiro, C.A.P.1
Kassavetis, G.A.2
Geiduschek, E.P.3
-
17
-
-
0029912151
-
Alternative outcomes in assembly of promoter complexes: The roles of TBP and a flexible linker in placing TFIIIB on tRNA genes
-
Joazeiro C. A. P., Kassavetis G. A., Geiduschek E. P. Alternative outcomes in assembly of promoter complexes: the roles of TBP and a flexible linker in placing TFIIIB on tRNA genes. Genes Dev. 10:1996;725-739.
-
(1996)
Genes Dev.
, vol.10
, pp. 725-739
-
-
Joazeiro, C.A.P.1
Kassavetis, G.A.2
Geiduschek, E.P.3
-
18
-
-
0030590260
-
How proteins recognize the TATA box
-
Juo Z. S., Chieu T. K., Leiberman P. M., Baikalov I., Berk A., Dickerson R. E. How proteins recognize the TATA box. J. Mol. Biol. 261:1996;239-254.
-
(1996)
J. Mol. Biol.
, vol.261
, pp. 239-254
-
-
Juo, Z.S.1
Chieu, T.K.2
Leiberman, P.M.3
Baikalov, I.4
Berk, A.5
Dickerson, R.E.6
-
19
-
-
0028289189
-
Detection of localized DNA flexibility
-
Kahn J. D., Yun E., Crothers D. M. Detection of localized DNA flexibility. Nature. 368:1994;163-166.
-
(1994)
Nature
, vol.368
, pp. 163-166
-
-
Kahn, J.D.1
Yun, E.2
Crothers, D.M.3
-
20
-
-
0024360443
-
Transcription factor IIIB generates extended DNA interactions in RNA polymerase III transcription complexes on tRNA genes
-
Kassavetis G. A., Riggs D. L., Negri R., Nguyen L. H., Geiduschek E. P. Transcription factor IIIB generates extended DNA interactions in RNA polymerase III transcription complexes on tRNA genes. Mol. Cell. Biol. 9:1989;2551-2566.
-
(1989)
Mol. Cell. Biol.
, vol.9
, pp. 2551-2566
-
-
Kassavetis, G.A.1
Riggs, D.L.2
Negri, R.3
Nguyen, L.H.4
Geiduschek, E.P.5
-
21
-
-
0025055216
-
S. cerevisiae TFIIIB is the transcription initiation factor proper of RNA polymerase III, while TFIIIA and TFIIIC are assembly factors
-
Kassavetis G. A., Braun B. R., Nguyen L. H., Geiduschek E. P. S. cerevisiae TFIIIB is the transcription initiation factor proper of RNA polymerase III, while TFIIIA and TFIIIC are assembly factors. Cell. 60:1990;235-245.
-
(1990)
Cell
, vol.60
, pp. 235-245
-
-
Kassavetis, G.A.1
Braun, B.R.2
Nguyen, L.H.3
Geiduschek, E.P.4
-
22
-
-
0026465666
-
The role of the TATA-binding protein in the assembly and function of the multisubunit yeast RNA polymerase III transcription factor TFIIIB
-
Kassavetis G. A., Joazeiro C. A. P., Pisano M., Geiduschek E. P., Colbert T., Hahn S., Blanco J. A. The role of the TATA-binding protein in the assembly and function of the multisubunit yeast RNA polymerase III transcription factor TFIIIB. Cell. 71:1992;1055-1064.
-
(1992)
Cell
, vol.71
, pp. 1055-1064
-
-
Kassavetis, G.A.1
Joazeiro, C.A.P.2
Pisano, M.3
Geiduschek, E.P.4
Colbert, T.5
Hahn, S.6
Blanco, J.A.7
-
23
-
-
0030837530
-
Domains of the Brf component of RNA polymerase III transcription factor IIIB (TFIIIB): Functions in assembly of TFIIIB-DNA complexes and recruitment of RNA polymerase to the promoter
-
Kassavetis G. A., Bardeleben C., Kumar A., Ramirez E., Geiduschek E. P. Domains of the Brf component of RNA polymerase III transcription factor IIIB (TFIIIB): functions in assembly of TFIIIB-DNA complexes and recruitment of RNA polymerase to the promoter. Mol. Cell. Biol. 17:1997;5299-5306.
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 5299-5306
-
-
Kassavetis, G.A.1
Bardeleben, C.2
Kumar, A.3
Ramirez, E.4
Geiduschek, E.P.5
-
24
-
-
0031866196
-
Functional and structural organization of the RNA polymerase III transcription initiation complex
-
Kassavetis G. A., Kumar A., Ramirez E., Geiduschek E. P. Functional and structural organization of the RNA polymerase III transcription initiation complex. Mol. Cell. Biol. 18:1998;5587-5599.
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 5587-5599
-
-
Kassavetis, G.A.1
Kumar, A.2
Ramirez, E.3
Geiduschek, E.P.4
-
25
-
-
0028073409
-
Conserved functional domains of the RNA polymerase III general transcription factor BRF
-
Khoo B., Brophy B., Jackson S. P. Conserved functional domains of the RNA polymerase III general transcription factor BRF. Genes Dev. 8:1994;2879-2890.
-
(1994)
Genes Dev.
, vol.8
, pp. 2879-2890
-
-
Khoo, B.1
Brophy, B.2
Jackson, S.P.3
-
26
-
-
0027483012
-
Co-crystal structure of TBP recognizing the minor groove of a TATA element
-
Kim J. L., Nikolov D. B., Burley S. K. Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature. 365:1993;520-527.
-
(1993)
Nature
, vol.365
, pp. 520-527
-
-
Kim, J.L.1
Nikolov, D.B.2
Burley, S.K.3
-
27
-
-
0027504913
-
Crystal structure of a yeast TBP/TATA-box complex
-
Kim Y., Geiger J. H., Hahn S., Sigler P. B. Crystal structure of a yeast TBP/TATA-box complex. Nature. 365:1993;512-520.
-
(1993)
Nature
, vol.365
, pp. 512-520
-
-
Kim, Y.1
Geiger, J.H.2
Hahn, S.3
Sigler, P.B.4
-
28
-
-
0029094283
-
Chemical probe and missing nucleoside analysis of Flp recombinase bound to the recombination target sequence
-
Kimball A. S., Kimball M. L., Jayaram M., Tullius T. D. Chemical probe and missing nucleoside analysis of Flp recombinase bound to the recombination target sequence. Nucl. Acids Res. 23:1995;3009-3017.
-
(1995)
Nucl. Acids Res.
, vol.23
, pp. 3009-3017
-
-
Kimball, A.S.1
Kimball, M.L.2
Jayaram, M.3
Tullius, T.D.4
-
29
-
-
0020418288
-
Specific transcription of homologous class III genes in yeast-soluble cell-free extracts
-
Klekamp M. S., Weil P. A. Specific transcription of homologous class III genes in yeast-soluble cell-free extracts. J. Biol. Chem. 257:1982;8432-8441.
-
(1982)
J. Biol. Chem.
, vol.257
, pp. 8432-8441
-
-
Klekamp, M.S.1
Weil, P.A.2
-
30
-
-
0030899809
-
Functional dissection of the B″ component of RNA polymerase III transcription factor (TF)IIIB: A scaffolding protein with multiple roles in assembly and initiation of transcription
-
Kumar A., Kassavetis G. A., Geiduschek E. P., Hambalko M., Brent C. J. Functional dissection of the B″ component of RNA polymerase III transcription factor (TF)IIIB: a scaffolding protein with multiple roles in assembly and initiation of transcription. Mol. Cell. Biol. 17:1997;1868-1880.
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 1868-1880
-
-
Kumar, A.1
Kassavetis, G.A.2
Geiduschek, E.P.3
Hambalko, M.4
Brent, C.J.5
-
31
-
-
0032459564
-
Transcription factor IIIB: The architecture of its DNA complex, and its roles in initiation of transcription by RNA polymerase III
-
Cold Spring Harbor: Cold Spring Harbor Laboratory Press
-
Kumar A., Grove A., Kassavetis G. A., Geiduschek E. P. Transcription factor IIIB: the architecture of its DNA complex, and its roles in initiation of transcription by RNA polymerase III. 63rd Cold Spring Harbor Symposium on Quantitative Biology: Mechanisms of Transcription. 1999;Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
-
(1999)
63rd Cold Spring Harbor Symposium on Quantitative Biology: Mechanisms of Transcription
-
-
Kumar, A.1
Grove, A.2
Kassavetis, G.A.3
Geiduschek, E.P.4
-
32
-
-
0021022011
-
Transcription of class III genes: Formation of preinitiation complexes
-
Lassar A. B., Martin P. L., Roeder R. G. Transcription of class III genes: formation of preinitiation complexes. Science. 222:1983;740-748.
-
(1983)
Science
, vol.222
, pp. 740-748
-
-
Lassar, A.B.1
Martin, P.L.2
Roeder, R.G.3
-
34
-
-
0030699094
-
A tetratricopeptide repeat mutation in yeast transcription factor IIIC131 (TFIIIC131) facilitates recruitment of TFIIB-related factor TFIIIB70
-
Moir R. D., Sethy-Coraci I., Puglia K., Librizzi M. D., Willis I. M. A tetratricopeptide repeat mutation in yeast transcription factor IIIC131 (TFIIIC131) facilitates recruitment of TFIIB-related factor TFIIIB70. Mol. Cell. Biol. 17:1997;7119-7125.
-
(1997)
Mol. Cell. Biol.
, vol.17
, pp. 7119-7125
-
-
Moir, R.D.1
Sethy-Coraci, I.2
Puglia, K.3
Librizzi, M.D.4
Willis, I.M.5
-
35
-
-
16944363563
-
Mapping the contacts of yeast TFIIIB and RNA polymerase III at various distances from the major groove of DNA by DNA photoaffinity labeling
-
Persinger J., Bartholomew B. Mapping the contacts of yeast TFIIIB and RNA polymerase III at various distances from the major groove of DNA by DNA photoaffinity labeling. J. Biol. Chem. 271:1996;33039-33046.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 33039-33046
-
-
Persinger, J.1
Bartholomew, B.2
-
36
-
-
0021912311
-
Effects of temperature and single-stranded DNA on the interaction of an RNA polymerase III transcription factor with a tRNA gene
-
Stillman D. J., Caspers P., Geiduschek E. P. Effects of temperature and single-stranded DNA on the interaction of an RNA polymerase III transcription factor with a tRNA gene. Cell. 40:1985;311-317.
-
(1985)
Cell
, vol.40
, pp. 311-317
-
-
Stillman, D.J.1
Caspers, P.2
Geiduschek, E.P.3
-
37
-
-
0026566106
-
Yeast and human TFIID with altered DNA-binding specificity for TATA elements
-
Strubin M., Struhl K. Yeast and human TFIID with altered DNA-binding specificity for TATA elements. Cell. 68:1992;721-730.
-
(1992)
Cell
, vol.68
, pp. 721-730
-
-
Strubin, M.1
Struhl, K.2
-
38
-
-
0021956129
-
Characterization of factors and DNA sequences required for accurate transcription of the Saccharomyces cerevisiae 5 S RNA gene
-
Taylor M. J., Segall J. Characterization of factors and DNA sequences required for accurate transcription of the Saccharomyces cerevisiae 5 S RNA gene. J. Biol. Chem. 260:1985;4531-4540.
-
(1985)
J. Biol. Chem.
, vol.260
, pp. 4531-4540
-
-
Taylor, M.J.1
Segall, J.2
-
39
-
-
0002524447
-
Bending of DNA in nucleoprotein complexes
-
N. R. Cozzarelli, & J. C. Wang. Cold Spring Harbor: Cold Spring Harbor Laboratory Press
-
Travers A. A., Klug A. Bending of DNA in nucleoprotein complexes. Cozzarelli N. R., Wang J. C. DNA Topology and its Biological Effects. 1990;57-106 Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
-
(1990)
DNA Topology and Its Biological Effects
, pp. 57-106
-
-
Travers, A.A.1
Klug, A.2
-
40
-
-
0025826571
-
Flexibility of the DNA enhances promoter affinity of Escherichia coli RNA polymerase
-
Werel W., Schickor P., Heumann H. Flexibility of the DNA enhances promoter affinity of Escherichia coli RNA polymerase. EMBO J. 10:1991;2589-2594.
-
(1991)
EMBO J.
, vol.10
, pp. 2589-2594
-
-
Werel, W.1
Schickor, P.2
Heumann, H.3
-
41
-
-
0028825536
-
The symmetry of the yeast U6 RNA gene's TATA box and the orientation of the TATA-binding protein in yeast TFIIIB
-
Whitehall S. K., Kassavetis G. A., Geiduschek E. P. The symmetry of the yeast U6 RNA gene's TATA box and the orientation of the TATA-binding protein in yeast TFIIIB. Genes Dev. 9:1995;2974-2985.
-
(1995)
Genes Dev.
, vol.9
, pp. 2974-2985
-
-
Whitehall, S.K.1
Kassavetis, G.A.2
Geiduschek, E.P.3
-
42
-
-
0025309524
-
Yeast and human TATA-binding proteins have nearly identical DNA sequence requirements for transcription in vitro
-
Wobbe R. C., Struhl K. Yeast and human TATA-binding proteins have nearly identical DNA sequence requirements for transcription in vitro. Mol. Cell. Biol. 8:1990;3859-3867.
-
(1990)
Mol. Cell. Biol.
, vol.8
, pp. 3859-3867
-
-
Wobbe, R.C.1
Struhl, K.2
-
43
-
-
0028365899
-
TBP-DNA interactions in the minor groove discriminate between A:T and T:A base pairs
-
Wong J. M., Bateman E. TBP-DNA interactions in the minor groove discriminate between A:T and T:A base pairs. Nucl. Acids Res. 22:1994;1890-1896.
-
(1994)
Nucl. Acids Res.
, vol.22
, pp. 1890-1896
-
-
Wong, J.M.1
Bateman, E.2
-
44
-
-
0018447932
-
Anisotropic flexibility of DNA and the nucleosomal structure
-
Zhurkin V. B., Lysov Y. P., Ivanov V. I. Anisotropic flexibility of DNA and the nucleosomal structure. Nucl. Acids Res. 6:1979;1081-1096.
-
(1979)
Nucl. Acids Res.
, vol.6
, pp. 1081-1096
-
-
Zhurkin, V.B.1
Lysov, Y.P.2
Ivanov, V.I.3
|