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Volumn 285, Issue 4, 1999, Pages 1429-1440

The RNA polymerase III-recruiting factor TFIIIB induces a DNA bend between the TATA box and the transcriptional start site

Author keywords

DNA flexibility; Missing nucleoside interference; RNA polymerase III; TBP; TFIIIB

Indexed keywords

CHICKEN OVALBUMIN UPSTREAM PROMOTER TRANSCRIPTION FACTOR; CURVED DNA; DNA DIRECTED RNA POLYMERASE III;

EID: 0033613810     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1998.2347     Document Type: Article
Times cited : (30)

References (44)
  • 1
    • 0025946109 scopus 로고
    • Two components of Saccharomyces cerevisiae transcription factor IIIB (TFIIIB) are stereospecifically located upstream of a tRNA gene and interact with the second-largest subunit of TFIIIC
    • Bartholomew B., Kassavetis G. A., Braun B. R., Geiduschek E. P. Two components of Saccharomyces cerevisiae transcription factor IIIB (TFIIIB) are stereospecifically located upstream of a tRNA gene and interact with the second-largest subunit of TFIIIC. Mol. Cell. Biol. 11:1991;5181-5189.
    • (1991) Mol. Cell. Biol. , vol.11 , pp. 5181-5189
    • Bartholomew, B.1    Kassavetis, G.A.2    Braun, B.R.3    Geiduschek, E.P.4
  • 3
    • 0037525078 scopus 로고
    • Multiple states of protein-DNA interaction in the assembly of transcription complexes on Saccharomyces cerevisiae 5 S ribosomal RNA genes
    • Braun B. R., Riggs D. R., Kassavetis G. A., Geiduschek E. P. Multiple states of protein-DNA interaction in the assembly of transcription complexes on Saccharomyces cerevisiae 5 S ribosomal RNA genes. Proc. Natl Acad. Sci. USA. 86:1989;2530-2534.
    • (1989) Proc. Natl Acad. Sci. USA , vol.86 , pp. 2530-2534
    • Braun, B.R.1    Riggs, D.R.2    Kassavetis, G.A.3    Geiduschek, E.P.4
  • 4
    • 0026540237 scopus 로고
    • Bending of the Saccharomyces cerevisiae 5 S rRNA gene in transcription factor complexes
    • Braun B. R., Kassavetis G. A., Geiduschek E. P. Bending of the Saccharomyces cerevisiae 5 S rRNA gene in transcription factor complexes. J. Biol. Chem. 267:1992;22562-22569.
    • (1992) J. Biol. Chem. , vol.267 , pp. 22562-22569
    • Braun, B.R.1    Kassavetis, G.A.2    Geiduschek, E.P.3
  • 5
    • 0020385863 scopus 로고
    • Mechanics of sequence-dependent stacking of bases in B -DNA
    • Calladine C. R. Mechanics of sequence-dependent stacking of bases in B -DNA. J. Mol. Biol. 161:1982;343-352.
    • (1982) J. Mol. Biol. , vol.161 , pp. 343-352
    • Calladine, C.R.1
  • 7
    • 0031952187 scopus 로고    scopus 로고
    • Architecture of protein and DNA contacts within the TFIIIB-DNA complex
    • Colbert T., Lee S., Schimmack G., Hahn S. Architecture of protein and DNA contacts within the TFIIIB-DNA complex. Mol. Cell. Biol. 18:1998;1682-1691.
    • (1998) Mol. Cell. Biol. , vol.18 , pp. 1682-1691
    • Colbert, T.1    Lee, S.2    Schimmack, G.3    Hahn, S.4
  • 8
    • 0001824401 scopus 로고    scopus 로고
    • Sequence-dependent B-DNA conformation in crystals and in protein complexes
    • R. H. Sarma, & M. H. Sarma. Schenectady: Adenine Press
    • Dickerson R. E. Sequence-dependent B-DNA conformation in crystals and in protein complexes. Sarma R. H., Sarma M. H. Structure, Motion, Interaction and Expression of Biological Macromolecules. 1998;17-36 Adenine Press, Schenectady.
    • (1998) Structure, Motion, Interaction and Expression of Biological Macromolecules , pp. 17-36
    • Dickerson, R.E.1
  • 10
    • 0028838080 scopus 로고
    • TFIIIB placement on a yeast U6 RNA gene in vivo is directed primarily by TFIIIC rather than by sequence specific DNA contacts
    • Gerlach V. L., Whitehall S. K., Geiduschek E. P., Brow D. A. TFIIIB placement on a yeast U6 RNA gene in vivo is directed primarily by TFIIIC rather than by sequence specific DNA contacts. Mol. Cell. Biol. 15:1995;1455-1466.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 1455-1466
    • Gerlach, V.L.1    Whitehall, S.K.2    Geiduschek, E.P.3    Brow, D.A.4
  • 11
    • 0027536101 scopus 로고
    • Crystal structure of C-A-T-G-G-C-C-A-T-G and its implications for A-tract bending models
    • Goodsell D. S., Kopka M. L., Cascio D., Dickerson R. E. Crystal structure of C-A-T-G-G-C-C-A-T-G and its implications for A-tract bending models. Proc. Natl Acad. Sci. USA. 90:1993;2930-2934.
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 2930-2934
    • Goodsell, D.S.1    Kopka, M.L.2    Cascio, D.3    Dickerson, R.E.4
  • 12
    • 0028225644 scopus 로고
    • The crystal structure of C-C-A-T-T-A-A-T-G-G: Implications for bending of B -DNA at T-A steps
    • Goodsell D. S., Kaczor-Grzeskowiak M., Dickerson R. E. The crystal structure of C-C-A-T-T-A-A-T-G-G: implications for bending of B -DNA at T-A steps. J. Mol. Biol. 239:1994;79-96.
    • (1994) J. Mol. Biol. , vol.239 , pp. 79-96
    • Goodsell, D.S.1    Kaczor-Grzeskowiak, M.2    Dickerson, R.E.3
  • 13
    • 0032475962 scopus 로고    scopus 로고
    • Affinity, stability and polarity of binding of the TATA binding protein governed by flexure at the TATA box
    • Grove A., Galeone A., Yu E., Mayol L., Geiduschek E. P. Affinity, stability and polarity of binding of the TATA binding protein governed by flexure at the TATA box. J. Mol. Biol. 282:1998;731-739.
    • (1998) J. Mol. Biol. , vol.282 , pp. 731-739
    • Grove, A.1    Galeone, A.2    Yu, E.3    Mayol, L.4    Geiduschek, E.P.5
  • 14
    • 0023663356 scopus 로고
    • Interactions of T7 RNA polymerase with T7 late promoters measured by footprinting with methidiumpropyl-EDTA-iron(II)
    • Gunderson S. I., Chapman K. A., Burgess R. R. Interactions of T7 RNA polymerase with T7 late promoters measured by footprinting with methidiumpropyl-EDTA-iron(II). Biochemistry. 26:1987;1539-1546.
    • (1987) Biochemistry , vol.26 , pp. 1539-1546
    • Gunderson, S.I.1    Chapman, K.A.2    Burgess, R.R.3
  • 15
    • 0024366475 scopus 로고
    • The missing nucleoside experiment: A new technique to study recognition of DNA by protein
    • Hayes J. J., Tullius T. D. The missing nucleoside experiment: a new technique to study recognition of DNA by protein. Biochemistry. 28:1989;9521-9527.
    • (1989) Biochemistry , vol.28 , pp. 9521-9527
    • Hayes, J.J.1    Tullius, T.D.2
  • 16
    • 0028230457 scopus 로고
    • Identical components of yeast transcription factor IIIB are required and sufficient for transcription of TATA box-containing and TATA-less genes
    • Joazeiro C. A. P., Kassavetis G. A., Geiduschek E. P. Identical components of yeast transcription factor IIIB are required and sufficient for transcription of TATA box-containing and TATA-less genes. Mol. Cell. Biol. 14:1994;2798-2808.
    • (1994) Mol. Cell. Biol. , vol.14 , pp. 2798-2808
    • Joazeiro, C.A.P.1    Kassavetis, G.A.2    Geiduschek, E.P.3
  • 17
    • 0029912151 scopus 로고    scopus 로고
    • Alternative outcomes in assembly of promoter complexes: The roles of TBP and a flexible linker in placing TFIIIB on tRNA genes
    • Joazeiro C. A. P., Kassavetis G. A., Geiduschek E. P. Alternative outcomes in assembly of promoter complexes: the roles of TBP and a flexible linker in placing TFIIIB on tRNA genes. Genes Dev. 10:1996;725-739.
    • (1996) Genes Dev. , vol.10 , pp. 725-739
    • Joazeiro, C.A.P.1    Kassavetis, G.A.2    Geiduschek, E.P.3
  • 19
    • 0028289189 scopus 로고
    • Detection of localized DNA flexibility
    • Kahn J. D., Yun E., Crothers D. M. Detection of localized DNA flexibility. Nature. 368:1994;163-166.
    • (1994) Nature , vol.368 , pp. 163-166
    • Kahn, J.D.1    Yun, E.2    Crothers, D.M.3
  • 20
    • 0024360443 scopus 로고
    • Transcription factor IIIB generates extended DNA interactions in RNA polymerase III transcription complexes on tRNA genes
    • Kassavetis G. A., Riggs D. L., Negri R., Nguyen L. H., Geiduschek E. P. Transcription factor IIIB generates extended DNA interactions in RNA polymerase III transcription complexes on tRNA genes. Mol. Cell. Biol. 9:1989;2551-2566.
    • (1989) Mol. Cell. Biol. , vol.9 , pp. 2551-2566
    • Kassavetis, G.A.1    Riggs, D.L.2    Negri, R.3    Nguyen, L.H.4    Geiduschek, E.P.5
  • 21
    • 0025055216 scopus 로고
    • S. cerevisiae TFIIIB is the transcription initiation factor proper of RNA polymerase III, while TFIIIA and TFIIIC are assembly factors
    • Kassavetis G. A., Braun B. R., Nguyen L. H., Geiduschek E. P. S. cerevisiae TFIIIB is the transcription initiation factor proper of RNA polymerase III, while TFIIIA and TFIIIC are assembly factors. Cell. 60:1990;235-245.
    • (1990) Cell , vol.60 , pp. 235-245
    • Kassavetis, G.A.1    Braun, B.R.2    Nguyen, L.H.3    Geiduschek, E.P.4
  • 22
    • 0026465666 scopus 로고
    • The role of the TATA-binding protein in the assembly and function of the multisubunit yeast RNA polymerase III transcription factor TFIIIB
    • Kassavetis G. A., Joazeiro C. A. P., Pisano M., Geiduschek E. P., Colbert T., Hahn S., Blanco J. A. The role of the TATA-binding protein in the assembly and function of the multisubunit yeast RNA polymerase III transcription factor TFIIIB. Cell. 71:1992;1055-1064.
    • (1992) Cell , vol.71 , pp. 1055-1064
    • Kassavetis, G.A.1    Joazeiro, C.A.P.2    Pisano, M.3    Geiduschek, E.P.4    Colbert, T.5    Hahn, S.6    Blanco, J.A.7
  • 23
    • 0030837530 scopus 로고    scopus 로고
    • Domains of the Brf component of RNA polymerase III transcription factor IIIB (TFIIIB): Functions in assembly of TFIIIB-DNA complexes and recruitment of RNA polymerase to the promoter
    • Kassavetis G. A., Bardeleben C., Kumar A., Ramirez E., Geiduschek E. P. Domains of the Brf component of RNA polymerase III transcription factor IIIB (TFIIIB): functions in assembly of TFIIIB-DNA complexes and recruitment of RNA polymerase to the promoter. Mol. Cell. Biol. 17:1997;5299-5306.
    • (1997) Mol. Cell. Biol. , vol.17 , pp. 5299-5306
    • Kassavetis, G.A.1    Bardeleben, C.2    Kumar, A.3    Ramirez, E.4    Geiduschek, E.P.5
  • 24
    • 0031866196 scopus 로고    scopus 로고
    • Functional and structural organization of the RNA polymerase III transcription initiation complex
    • Kassavetis G. A., Kumar A., Ramirez E., Geiduschek E. P. Functional and structural organization of the RNA polymerase III transcription initiation complex. Mol. Cell. Biol. 18:1998;5587-5599.
    • (1998) Mol. Cell. Biol. , vol.18 , pp. 5587-5599
    • Kassavetis, G.A.1    Kumar, A.2    Ramirez, E.3    Geiduschek, E.P.4
  • 25
    • 0028073409 scopus 로고
    • Conserved functional domains of the RNA polymerase III general transcription factor BRF
    • Khoo B., Brophy B., Jackson S. P. Conserved functional domains of the RNA polymerase III general transcription factor BRF. Genes Dev. 8:1994;2879-2890.
    • (1994) Genes Dev. , vol.8 , pp. 2879-2890
    • Khoo, B.1    Brophy, B.2    Jackson, S.P.3
  • 26
    • 0027483012 scopus 로고
    • Co-crystal structure of TBP recognizing the minor groove of a TATA element
    • Kim J. L., Nikolov D. B., Burley S. K. Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature. 365:1993;520-527.
    • (1993) Nature , vol.365 , pp. 520-527
    • Kim, J.L.1    Nikolov, D.B.2    Burley, S.K.3
  • 27
    • 0027504913 scopus 로고
    • Crystal structure of a yeast TBP/TATA-box complex
    • Kim Y., Geiger J. H., Hahn S., Sigler P. B. Crystal structure of a yeast TBP/TATA-box complex. Nature. 365:1993;512-520.
    • (1993) Nature , vol.365 , pp. 512-520
    • Kim, Y.1    Geiger, J.H.2    Hahn, S.3    Sigler, P.B.4
  • 28
    • 0029094283 scopus 로고
    • Chemical probe and missing nucleoside analysis of Flp recombinase bound to the recombination target sequence
    • Kimball A. S., Kimball M. L., Jayaram M., Tullius T. D. Chemical probe and missing nucleoside analysis of Flp recombinase bound to the recombination target sequence. Nucl. Acids Res. 23:1995;3009-3017.
    • (1995) Nucl. Acids Res. , vol.23 , pp. 3009-3017
    • Kimball, A.S.1    Kimball, M.L.2    Jayaram, M.3    Tullius, T.D.4
  • 29
    • 0020418288 scopus 로고
    • Specific transcription of homologous class III genes in yeast-soluble cell-free extracts
    • Klekamp M. S., Weil P. A. Specific transcription of homologous class III genes in yeast-soluble cell-free extracts. J. Biol. Chem. 257:1982;8432-8441.
    • (1982) J. Biol. Chem. , vol.257 , pp. 8432-8441
    • Klekamp, M.S.1    Weil, P.A.2
  • 30
    • 0030899809 scopus 로고    scopus 로고
    • Functional dissection of the B″ component of RNA polymerase III transcription factor (TF)IIIB: A scaffolding protein with multiple roles in assembly and initiation of transcription
    • Kumar A., Kassavetis G. A., Geiduschek E. P., Hambalko M., Brent C. J. Functional dissection of the B″ component of RNA polymerase III transcription factor (TF)IIIB: a scaffolding protein with multiple roles in assembly and initiation of transcription. Mol. Cell. Biol. 17:1997;1868-1880.
    • (1997) Mol. Cell. Biol. , vol.17 , pp. 1868-1880
    • Kumar, A.1    Kassavetis, G.A.2    Geiduschek, E.P.3    Hambalko, M.4    Brent, C.J.5
  • 31
  • 32
    • 0021022011 scopus 로고
    • Transcription of class III genes: Formation of preinitiation complexes
    • Lassar A. B., Martin P. L., Roeder R. G. Transcription of class III genes: formation of preinitiation complexes. Science. 222:1983;740-748.
    • (1983) Science , vol.222 , pp. 740-748
    • Lassar, A.B.1    Martin, P.L.2    Roeder, R.G.3
  • 34
    • 0030699094 scopus 로고    scopus 로고
    • A tetratricopeptide repeat mutation in yeast transcription factor IIIC131 (TFIIIC131) facilitates recruitment of TFIIB-related factor TFIIIB70
    • Moir R. D., Sethy-Coraci I., Puglia K., Librizzi M. D., Willis I. M. A tetratricopeptide repeat mutation in yeast transcription factor IIIC131 (TFIIIC131) facilitates recruitment of TFIIB-related factor TFIIIB70. Mol. Cell. Biol. 17:1997;7119-7125.
    • (1997) Mol. Cell. Biol. , vol.17 , pp. 7119-7125
    • Moir, R.D.1    Sethy-Coraci, I.2    Puglia, K.3    Librizzi, M.D.4    Willis, I.M.5
  • 35
    • 16944363563 scopus 로고    scopus 로고
    • Mapping the contacts of yeast TFIIIB and RNA polymerase III at various distances from the major groove of DNA by DNA photoaffinity labeling
    • Persinger J., Bartholomew B. Mapping the contacts of yeast TFIIIB and RNA polymerase III at various distances from the major groove of DNA by DNA photoaffinity labeling. J. Biol. Chem. 271:1996;33039-33046.
    • (1996) J. Biol. Chem. , vol.271 , pp. 33039-33046
    • Persinger, J.1    Bartholomew, B.2
  • 36
    • 0021912311 scopus 로고
    • Effects of temperature and single-stranded DNA on the interaction of an RNA polymerase III transcription factor with a tRNA gene
    • Stillman D. J., Caspers P., Geiduschek E. P. Effects of temperature and single-stranded DNA on the interaction of an RNA polymerase III transcription factor with a tRNA gene. Cell. 40:1985;311-317.
    • (1985) Cell , vol.40 , pp. 311-317
    • Stillman, D.J.1    Caspers, P.2    Geiduschek, E.P.3
  • 37
    • 0026566106 scopus 로고
    • Yeast and human TFIID with altered DNA-binding specificity for TATA elements
    • Strubin M., Struhl K. Yeast and human TFIID with altered DNA-binding specificity for TATA elements. Cell. 68:1992;721-730.
    • (1992) Cell , vol.68 , pp. 721-730
    • Strubin, M.1    Struhl, K.2
  • 38
    • 0021956129 scopus 로고
    • Characterization of factors and DNA sequences required for accurate transcription of the Saccharomyces cerevisiae 5 S RNA gene
    • Taylor M. J., Segall J. Characterization of factors and DNA sequences required for accurate transcription of the Saccharomyces cerevisiae 5 S RNA gene. J. Biol. Chem. 260:1985;4531-4540.
    • (1985) J. Biol. Chem. , vol.260 , pp. 4531-4540
    • Taylor, M.J.1    Segall, J.2
  • 39
    • 0002524447 scopus 로고
    • Bending of DNA in nucleoprotein complexes
    • N. R. Cozzarelli, & J. C. Wang. Cold Spring Harbor: Cold Spring Harbor Laboratory Press
    • Travers A. A., Klug A. Bending of DNA in nucleoprotein complexes. Cozzarelli N. R., Wang J. C. DNA Topology and its Biological Effects. 1990;57-106 Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
    • (1990) DNA Topology and Its Biological Effects , pp. 57-106
    • Travers, A.A.1    Klug, A.2
  • 40
    • 0025826571 scopus 로고
    • Flexibility of the DNA enhances promoter affinity of Escherichia coli RNA polymerase
    • Werel W., Schickor P., Heumann H. Flexibility of the DNA enhances promoter affinity of Escherichia coli RNA polymerase. EMBO J. 10:1991;2589-2594.
    • (1991) EMBO J. , vol.10 , pp. 2589-2594
    • Werel, W.1    Schickor, P.2    Heumann, H.3
  • 41
    • 0028825536 scopus 로고
    • The symmetry of the yeast U6 RNA gene's TATA box and the orientation of the TATA-binding protein in yeast TFIIIB
    • Whitehall S. K., Kassavetis G. A., Geiduschek E. P. The symmetry of the yeast U6 RNA gene's TATA box and the orientation of the TATA-binding protein in yeast TFIIIB. Genes Dev. 9:1995;2974-2985.
    • (1995) Genes Dev. , vol.9 , pp. 2974-2985
    • Whitehall, S.K.1    Kassavetis, G.A.2    Geiduschek, E.P.3
  • 42
    • 0025309524 scopus 로고
    • Yeast and human TATA-binding proteins have nearly identical DNA sequence requirements for transcription in vitro
    • Wobbe R. C., Struhl K. Yeast and human TATA-binding proteins have nearly identical DNA sequence requirements for transcription in vitro. Mol. Cell. Biol. 8:1990;3859-3867.
    • (1990) Mol. Cell. Biol. , vol.8 , pp. 3859-3867
    • Wobbe, R.C.1    Struhl, K.2
  • 43
    • 0028365899 scopus 로고
    • TBP-DNA interactions in the minor groove discriminate between A:T and T:A base pairs
    • Wong J. M., Bateman E. TBP-DNA interactions in the minor groove discriminate between A:T and T:A base pairs. Nucl. Acids Res. 22:1994;1890-1896.
    • (1994) Nucl. Acids Res. , vol.22 , pp. 1890-1896
    • Wong, J.M.1    Bateman, E.2
  • 44
    • 0018447932 scopus 로고
    • Anisotropic flexibility of DNA and the nucleosomal structure
    • Zhurkin V. B., Lysov Y. P., Ivanov V. I. Anisotropic flexibility of DNA and the nucleosomal structure. Nucl. Acids Res. 6:1979;1081-1096.
    • (1979) Nucl. Acids Res. , vol.6 , pp. 1081-1096
    • Zhurkin, V.B.1    Lysov, Y.P.2    Ivanov, V.I.3


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