Multivariate analysis of a data matrix containing A-DNA and B-DNA dinucleoside monophosphate steps: Multidimensional ramachandran plots for nucleic acids

Journal of Computational Chemistry

Volumn 19, Issue 7, 1998, Pages 695-715

  Beckers, M L M ^a   Buydens, L M C ^a  

^a RADBOUD UNIVERSITY NIJMEGEN   (Netherlands)

Author keywords

Multivariate analysis; Nucleic acid; Ramachandran plots

Indexed keywords

EID: 0001425230     PISSN: 01928651     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1096-987X(199805)19:7<695::AID-JCC2>3.0.CO;2-L     Document Type: Article

References (23)

1. R. E. Dickerson et al., J. Mol. Biol., 205, 787 (1989).
2. A. A. Gorin, V. B. Zhurkin, and W. K. Olson, J. Mol. Biol., 247, 34 (1995).
3. M. A. El Hassan and C. R. Calladine, J. Mol. Biol. 259, 95 (1996).
4. G. N. Ramachandran, C. Ramakrishan, and V. Sasisekharan, J. Mol. Biol., 7, 95 (1963).
5. M. W. M. Mooren, On Nucleic Acid Structure Analysis by NMR, Thesis, University of Nijmegen, Nijmegen, The Netherlands, 1993.
6. M. Sundaralingam, Biopolymers, 7, 821 (1969).
7. W. K. Olson and P. J. Flory, Biopolymers, 11, 1 (1972).
8. W. K. Olson, Biopolymers, 15, 859 (1976).
9. N. Yathindra and M. Sundaralingan, Nucl. Acids Res., 3, 729 (1976).
10. C. Altona and M. Sundaralingam, J. Am. Chem. Soc., 94, 8205 (1972).
11. A. V. Fratini, M. L. Kopka, H. R. Drew, and R. E. Dickerson, J. Mol. Chem. 247, 14686 (1982).
12. B. N. Conner, C. Yoon, J. L. Dickerson, and R. E. Dickerson, J. Mol. Biol., 174, 663 (1984).
13. B. Schneider, S. Neidle, and H. M. Berman, Biopolymers, 42, 113 (1997).
14. D. A. Pearlman and S.-H. Kim, J. Biomol. Struct. Dynam., 4, 49 (1986).
15. G. G. Privé, U. Heinemann, S. Chandrasegaran, L. S. Kan, M. L. Kopja, and R. E. Dickerson, Science, 238, 498 (1987).
16. H. M. Berman, W. K. Olson, D. L. Beveridge, J. Westbrook, A. Gelbin, T. Demeny, S. Hsiek, A. R. Srinivasan, and B. Schneider, Biophys. J., 63, 751 (1992). Internet: http://ndb-server.rutgers.edu/
17. E. J. Jackson, A User's Guide to Principle Component Analysis, John Wiley & Sons, New York, 1990.
18. K. R. Gabriel and C. L. Odoroff, The Biplot for Exploration and Diagnosis: Examples and Software, Department of Statistical Reporting #86/03, University of Rochester, Rochester, NY. 1986.
19. P. J. Lewi, Arzneim, Forsch, (Drug. Res.), 26, 1295 (1976).
20. P. J. Lewi. Chem. Intell. Lab. Syst., 5, 105 (1989).
21. R. D. Catell, Mutivariate Behavioral Research, 1, 245 (1966).
22. E. R. Malinowski, J. Chemometrics, 1, 33 (1987).
23. W. Saenger, Principles of Nucleic Acid Structure, Springer-Verlag, New York, 1984.