Mitochondrial protein phosphorylation: Lessons from yeasts

Gene

Volumn 255, Issue 1, 2000, Pages 59-64

  Tomaska, Lubomir ^a  

^a Physics and Informatics   (Slovakia)

Author keywords

Endosymbiosis; Evolution; Protein kinase; Protein phosphatase

Indexed keywords

CELL PROTEIN; PROTEIN KINASE;

ARTICLE; ENZYME REGULATION; GENOME; MITOCHONDRIAL MEMBRANE; NONHUMAN; PRIORITY JOURNAL; PROTEIN FAMILY; PROTEIN LOCALIZATION; PROTEIN PHOSPHORYLATION; PROTEIN TARGETING; SACCHAROMYCES CEREVISIAE; SIGNAL TRANSDUCTION;

DATABASES, FACTUAL; EVOLUTION, MOLECULAR; FUNGAL PROTEINS; MITOCHONDRIA; PHOSPHORIC MONOESTER HYDROLASES; PHOSPHORYLATION; PROTEIN KINASES; SACCHAROMYCES CEREVISIAE;

EID: 0034609448     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(00)00315-2     Document Type: Article

References (34)

1. Andersson S.G., Zomorodipour A., Andersson J.O., Sicheritz-Ponten T., Alsmark U.C., Podowski R.M., Näslund A.K., Eriksson A.S., Winkler H.H., Kurland C.G. The genome sequence of Rickettsia prowazekii and the origin of mitochondria. Nature. 396:1998;133-140.
2. Barral Y., Parra M., Bidlingmaier S., Snyder M. Nim1-related kinases coordinate cell cycle progression with the organization of the peripheral cytoskeleton in yeast. Genes Dev. 13:1999;176-187.
3. Blattner F.R., Plunkett G. 3rd, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y. The complete genome sequence of Escherichia coli K-12. Science. 277:1997;1453-1474.
4. Claros M.G., Vincens P. Computational method to predict mitochondrially imported proteins and their targeting sequences. Eur. J. Biochem. 241:1996;779-786.
5. 2-terminal extension of protein phosphatase PPZ1 has an essential functional role. J. Biol. Chem. 271:1996;26349-26355.
6. Entian K.D., et al. Functional analysis of 150 deletion mutants in Saccharomyces cerevisiae by a systematic approach. Mol. Gen. Genet. 262:1999;683-702.
7. +-ATPase by casein kinase I. J. Biol. Chem. 271:1996;32064-32072.
8. Francisco L., Wang W., Chan C.S. Type 1 protein phosphatase acts in opposition to Ipl1 protein kinase in regulating yeast chromosome segregation. Mol. Cell. Biol. 14:1994;4731-4740.
9. Graack H.R., Wittmann-Liebold B. Mitochondrial ribosomal proteins (MRPs) of yeast. Biochem. J. 329:1998;433-448.
10. Hanks S.K., Quinn A.M. Protein kinase catalytic domain sequence database: identification of conserved features of primary structure and classification of family members. Meth. Enzymol. 200:1991;38-62.
11. Harada H., Becknell B., Wilm M., Mann M., Huang L.J., Taylor S.S., Scott J.D., Korsmeyer S.J. Phosphorylation and inactivation of BAD by mitochondria-anchored protein kinase A. Mol. Cell. 3:1999;413-422.
12. 2-Terminal targeting motifs direct dual specificity A-kinase-anchoring protein 1 (D-AKAP1) to either mitochondria or endoplasmic reticulum. J. Cell Biol. 145:1999;951-959.
13. Hunter T. Protein kinases and phosphatases: the yin and yang of protein phosphorylation and signaling. Cell. 80:1995;225-236.
14. Hunter T., Plowman G.D. The protein kinases of budding yeast: six score and more. Trends Biochem. Sci. 22:1997;18-22.
15. Kakinuma Y., Maruyama T., Nozaki T., Wada Y., Ohsumi Y., Igarashi K. Cloning of the gene encoding a putative serine/threonine protein kinase which enhances spermine uptake in Saccharomyces cerevisiae. Biochem. Biophys. Res. Commun. 216:1995;985-992.
16. Koehler C.M., Merchant S., Schatz G. How membrane proteins travel across the mitochondrial intermembrane space. Trends Biochem. Sci. 24:1999;428-432.
17. Kunst F., et al. The complete genome sequence of the gram-positive bacterium Bacillus subtilis. Nature. 390:1997;249-256.
18. Lee C.M., Sedman J., Neupert W., Stuart R.A. The DNA helicase, Hmi1p, is transported into mitochondria by a C-terminal cleavable targeting signal. J. Biol. Chem. 274:1999;20937-20942.
19. Linn T.C., Pettit F.H., Reed L.J. Alpha-keto acid dehydrogenase complexes. X. Regulation of the activity of the pyruvate dehydrogenase complex from beef kidney mitochondria by phosphorylation and dephosphorylation. Proc. Natl. Acad. Sci. USA. 62:1969;234-241.
20. Lisowsky T., Michaelis G. A nuclear gene essential for mitochondrial replication suppresses a defect of mitochondrial transcription in Saccharomyces cerevisiae. Mol. Gen. Genet. 214:1988;218-223.
21. Madhani H.D., Fink G.R. The riddle of MAP kinase signaling specificity. Trends Genet. 14:1998;151-155.
22. Martin W.F., Müller M. The hydrogen hypothesis for the first eukaryote. Nature. 392:1998;37-41.
23. Mizuno T. Compilation of all genes encoding two-component phosphotransfer signal transducers in the genome of Escherichia coli. DNA Res. 4:1997;161-168.
24. Müller G., Bandlow W. Protein phosphorylation in yeast mitochondria: cAMP-dependence, submitochondrial localization and substrates of mitochondrial protein kinases. Yeast. 3:1987;161-174.
25. Nakai K., Kanehisa M. A knowledge base for predicting protein localization sites in eukaryotic cells. Genomics. 14:1992;897-911.
26. Papa S., Sardanelli A.M., Scacco S., Technikova-Dobrova Z. cAMP-dependent protein kinase and phosphoproteins in mammalian mitochondria. An extension of the cAMP-mediated intracellular signal transduction. FEBS Lett. 444:1999;245-249.
27. Popov K.M., Zhao Y., Shimomura Y., Kuntz M.J., Harris R.A. Branched-chain alpha-ketoacid dehydrogenase kinase. Molecular cloning, expression, and sequence similarity with histidine protein kinases. J. Biol. Chem. 267:1992;13127-13130.
28. Robinson L.C., Bradley C., Bryan J.D., Jerome A., Kweon Y., Panek H.R. The Yck2 yeast casein kinase 1 isoform shows cell cycle-specific localization to sites of polarized growth and is required for proper septin organization. Mol. Biol. Cell. 10:1999;1077-1092.
29. Sekito T., Thornton J., Butow R.A. Mitochondria-to-nuclear signaling is regulated by the subcellular localization of the transcription factors Rtg1p and Rtg3p. Mol. Biol. Cell. 11:2000;103-115.
30. Shu Y., Hallberg R.L. SCS1, a multicopy suppressor of hsp60-ts mutant alleles, does not encode a mitochondrially targeted protein. Mol. Cell. Biol. 15:1995;5618-5626.
31. Sidrauski C., Walter P. The transmembrane kinase Ire1p is a site-specific endonuclease that initiates mRNA splicing in the unfolded protein response. Cell. 90:1997;1031-1039.
32. Stephens R.S., Kalman S., Lammel C., Fan J., Marathe R., Aravind L., Mitchell W., Olinger L., Tatusov R.L., Zhao Q. Genome sequence of an obligate intracellular pathogen of humans: Chlamydia trachomatis. Science. 282:1998;754-759.
33. Sterner D.E., Lee J.M., Hardin S.E., Greenleaf A.L. The yeast carboxyl-terminal repeat domain kinase CTDK-I is a divergent cyclin-dependent kinase complex. Mol. Cell. Biol. 15:1995;5716-5724.
34. Yoshida S., Ohya Y., Hirose R., Nakano A., Anraku Y. STT10, a novel class-D VPS yeast gene required for osmotic integrity related to the PKC1/STT1 protein kinase pathway. Gene. 160:1995;117-122.