Specific molecular recognition of mixed nucleic acid sequences: An aromatic dication that binds in the DNA minor groove as a dimer

Proceedings of the National Academy of Sciences of the United States of America

Volumn 97, Issue 1, 2000, Pages 12-16

  Wang, Lei ^a   Bailly, Christian ^b   Kumar, Arvind ^a   Ding, Daoyuan ^a   Bajic, Miroslav ^a   Boykin, David W ^a   Wilson, W David ^a  

^a GEORGIA STATE UNIVERSITY   (United States)

^b Institut de Recherche sur le Cancer de Lille   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ANILIDE; BENZIMIDAZOLE DERIVATIVE; FURAN DERIVATIVE; NUCLEIC ACID; NUCLEOTIDE; PIBENZIMOL;

ARTICLE; DNA FOOTPRINTING; MOLECULAR RECOGNITION; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SURFACE PLASMON RESONANCE;

AMIDINES; BASE SEQUENCE; BISBENZIMIDE; DIMERIZATION; DNA; DNA FOOTPRINTING; MAGNETIC RESONANCE SPECTROSCOPY; MOLECULAR SEQUENCE DATA; MOLECULAR STRUCTURE; NETROPSIN; SURFACE PLASMON RESONANCE;

EID: 0034602772     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.97.1.12     Document Type: Article

References (30)

1. Bailly, C., (1998) in Advances in DNA Sequence-Specific Agents, ed. Hurley, L. H. (Jai, Greenwich, CT), Vol. 3. 97-156.
2. Mountzouris, J. A. & Hurley, L. H. (1996) in Bioorganic Chemistry: Nucleic Acids, ed. Hecht, S. M. (Oxford Univ. Press, New York), pp. 288-323.
3. Del Poeta, M., Schell, W., Dykstra, C. C., Jones, S., Tidwell, R. R., Czarny, A., Bajic, M., Kumar, A. & Boykin, D. W. (1998) Antimicrob. Agents Chemother. 42, 2495-2510.
4. Hopkins, K., Kumar, A., Bajic, M., Wilson, W. D., Bender, B. K., McCurdy, D. R., Hall, J. E., Tidwell, R. R. & Boykin, D. W. (1998) J. Med. Chem. 41, 3872-3878.
5. Neidle, S., Kelland, L. R., Trent, J. O., Simpson, I. J., Boykin, D. W., Kumar, A. & Wilson, W. D. (1997) Bioorg. Med. Chem. 7, 1403-1408.
6. Zimmer, C. & Wahnert, U. (1986) Prog. Biophys. Mol. Biol. 47, 31-112.
7. Geierstanger, B. H. & Wemmer, D. E. (1995) Annu. Rev. Biophys. Biomol. Struct. 24, 463-493.
8. Wilson, W. D., (1996) in Nucleic Acids in Chemistry and Biology, eds. Blackburn, G. M. & Gait, M. J. (IRL, Oxford), pp. 329-374.
9. Kopka, M. L., Yoon, C., Goodsell, D., Pjura, P. & Dickerson, R. E. (1985) Proc. Natl. Acad. Sci. USA 82, 1376-1380.
10. Lown, J. W., Krowicki, K., Bhat, U., Skorohogaty, A. Ward, B. & Dabrowiak, J. C. (1986) Biochemistry 25, 7408-7416.
11. Kopka, M. L. & Larsen, T. A. (1992) in Nucleic Acid Targeted Drug Design, eds. Probst, C. L. & Perun, T. J. (Dekker, New York), pp. 303-374.
12. Kopka M. L., Goodsell D., Han G., Chiu T., Lown J. W. & Dickerson R. E. (1997) Structure (London) 5, 1033-1046.
13. Pelton, J. G. & Wemmer, D. E. (1989) Proc. Natl. Acad. Sci. USA 86, 5723-5727.
14. Pelton, J. G. & Wemmer, D. E. (1990) J. Am. Chem. Soc. 112, 1393-1399.
15. Kielkopf, C. L., Baird, E. E., Dervan, P. B. & Rees, D. C. (1998) Nat. Struct. Biol. 5, 104-109.
16. White, S. Szewezyk, J. W., Turner, J. M., Baird, E. E. & Dervan, P. B. (1998) Nature (London) 391, 468-471.
17. Swalley, S. E., Baird, E. E. & Dervan, P. B. (1999) J. Am. Chem. Soc. 121, 1113-1120.
18. Herman, D. M., Turner, J. M., Baird, E. E. & Dervan, P. B. (1999) J. Am. Chem. Soc. 121, 1121-1127.
19. Seifert, J. L., Connor, R. E., Kushon, S. A., Wang, M. & Armitage, B. A. (1999) J. Am. Chem. Soc. 121, 2987-2995.
20. Chen, X., Mitra, S. N., Rao, S. T., Sekar, K. & Sundaralingam, M. (1998) Nucleic Acids Res. 26, 5464-5547.
21. Haq, I., Ladbury, J. E., Chowdhry, B. Z., Jenkins, T. C. & Chaires, J. B. (1997) J. Mol. Biol. 271, 244-257.
22. Browne, K. A., He, G.-X. & Bruice, T. C. (1993) J. Am. Chem. Soc. 115, 7072-7079.
23. Trent, J. O., Clark, G., Kumar, A., Wilson, W. D., Boykin, D. W., Hall, J. E., Tidwell, R. R., Blagburn, B. & Neidle, S. (1996) J. Med. Chem. 39, 4554-4562.
24. Wilson, W. D., Tanious, F. A., Ding, D., Kumar, A., Boykin, D. W., Colson, P., Houssier, C. & Bailly, C. (1998) J. Am. Chem. Soc. 120, 10310-10321.
25. Bailly, C., Hamy, F. & Waring, M. J. (1996) Biochemistry 35, 1150-1157.
26. Bailly, C., Dassonneville, L., Carrasco, C., Lucas, D., Kumar, A., Boykin, D. W. & Wilson, W. D. (1999) Anti-Cancer Drug Des. 14, 47-60.
27. BIAcore (1998) BIAcore BIApplications Handbook (BIAcore, Piscataway, NJ).
28. Connors, K. A. (1987) Binding Constants (Wiley, New York).
29. Ding, D., Gryaznov, S. M. & Wilson, W. D. (1998) Biochemistry 37, 12082-12093.
30. Trauger, J. W., Baird, E. E., Mrksich, M. & Dervan, P. B. (1996) J. Am. Chem. Soc. 118, 6160-6166.